Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0012078

Physical Location & Seq

Genomic Coordinates Forward (+)

12451606 .. 12454500

Gene Structure 2895 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G200400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGCAGCCATGGCTGCACTTCAGACCTCCATGACCTCTCTTTCTCTCTCCTCTAACTCCTTCCTGGGCCAACGACTCTTACCCCCTACTCTTTACCCAGTCCCGGCTAATTTAACAGCGAAGCCTTGCCTCATTGTAGTGAAGCTCAAGCGATGGGAGCGGAAGGAATGCAAGCCAAACAGCCTTCCTGTTTTACACAAAATGCATGTTAAGGTTGGAGATACGGTGAAAGTTATATCTGGGCATGAAAAGGGTAAAACTGGAGAGATAACAAAGATCTATAAGCACAATAGTACTGTGATAGTTAAAGACATAAACTTAAAGACGAAGCATATGAAGAGCAGGGAAGAGGGTGAACCAGGACAGATTATTAAGGTAGAAGGAGCTATCCACAGCTCGAATGTGATGCTTTACTCAAAAGAAAAGGATGTAGCAAGTCGAGTGGGTCATAAGATTCTGGAAAATGGACAACGAGTTCGCTACCTCATCAAAACTGGTGAAATAGTAGATAATGTAGAGAACTGGAAGAAACTGAAGGAAGAAAAAAGGAAAACTGAAGTAGCTGCCACTTCTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009941 GO:0009987 GO:0010467 GO:0016043 GO:0019538 GO:0031967 GO:0031975 GO:0032544 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0071840 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

KOW ribosomal_L24

Protein Analysis

193

Amino Acids

21.43

Weight (kDa)

9.84

Isoelectric Point (pI)

35.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012078)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54600 AT5G54600
fragaria_vesca	FvH4_3g21600
malus_domestica	MD03G1214300.v1.1 MD11G1229300.v1.1
prunus_persica	Prupe.4G200400_v2.0.a1
pyrus_communis	pycom03g16300 pycom11g20300
rosa_chinensis	RchiOBHm_Chr5g0037061
rosa_laevigata	RLG00000033747
rosa_multiflora	Rmu_sc0009252.1_g000002 Rmu_sc0014990.1_g000002
rosa_roxburghii	Rroxscaffold_1G00043890
rosa_rugosa	Rorug05G0160100
rosa_samantha	Rh5AG252200 Rh5BG254000 Rh5CG286600 Rh5DG262500
rosa_wichuraiana	Rw5G023250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	160
AciI	CCGC	1 cut(s)	160
AcuI	CTGAAG	3 cut(s)	5, 554, 576
AfaI	GTAC	1 cut(s)	295
AfiI	CCNNNNNNNGG	1 cut(s)	103
AjnI	CCWGG	2 cut(s)	63, 358
AloI	GAACNNNNNNTCC	2 cut(s)	459, 491
AluBI	AGCT	4 cut(s)	145, 386, 396, 563
AluI	AGCT	4 cut(s)	145, 386, 396, 563
AoxI	GGCC	1 cut(s)	67
ApeKI	GCWGC	3 cut(s)	5, 14, 563
ArsI	GACNNNNNNTTYG	2 cut(s)	459, 491
AspS9I	GGNCC	1 cut(s)	67
AsuC2I	CCSGG	1 cut(s)	104
AsuHPI	GGTGA	3 cut(s)	238, 365, 509
BbvI	GCAGC	2 cut(s)	17, 550
BccI	CCATC	1 cut(s)	147
BcgI	CGANNNNNNTGC	2 cut(s)	388, 422
BciT130I	CCWGG	2 cut(s)	65, 360
BcnI	CCSGG	1 cut(s)	104
BglII	AGATCT	1 cut(s)	276
BisI	GCNGC	3 cut(s)	6, 15, 564
BlsI	GCNGC	3 cut(s)	7, 16, 565
BmcAI	AGTACT	1 cut(s)	295
Bme1390I	CCNGG	3 cut(s)	65, 104, 360
BmgT120I	GGNCC	1 cut(s)	67
BmrFI	CCNGG	3 cut(s)	65, 104, 360
BmrI	ACTGGG	1 cut(s)	92
BmsI	GCATC	1 cut(s)	396
BmuI	ACTGGG	1 cut(s)	92
BpmI	CTGGAG	1 cut(s)	282
BpuEI	CTTGAG	1 cut(s)	131
BpuMI	CCSGG	1 cut(s)	104
BsaJI	CCNNGG	2 cut(s)	9, 64
BsaXI	ACNNNNNCTCC	2 cut(s)	210, 240
Bsc4I	CCNNNNNNNGG	1 cut(s)	103
Bse1I	ACTGG	4 cut(s)	98, 265, 499, 527
BseBI	CCWGG	2 cut(s)	65, 360
BseDI	CCNNGG	2 cut(s)	9, 64
BseGI	GGATG	1 cut(s)	433
BseLI	CCNNNNNNNGG	1 cut(s)	103
BseNI	ACTGG	4 cut(s)	98, 265, 499, 527
BseRI	GAGGAG	1 cut(s)	40
BseXI	GCAGC	2 cut(s)	17, 550
BshFI	GGCC	1 cut(s)	69
BsiSI	CCGG	1 cut(s)	104
BslFI	GGGAC	1 cut(s)	86
BslI	CCNNNNNNNGG	1 cut(s)	103
BsmFI	GGGAC	1 cut(s)	86
BsmI	GAATGC	1 cut(s)	173
BsnI	GGCC	1 cut(s)	69
Bsp143I	GATC	1 cut(s)	276
Bsp19I	CCATGG	1 cut(s)	9
BspACI	CCGC	1 cut(s)	160
BspANI	GGCC	1 cut(s)	69
BspQI	GCTCTTC	1 cut(s)	332
BsrBI	CCGCTC	1 cut(s)	160
BsrI	ACTGG	4 cut(s)	98, 265, 499, 527
BssECI	CCNNGG	2 cut(s)	9, 64
BssMI	GATC	1 cut(s)	276
BssT1I	CCWWGG	1 cut(s)	9
Bst2UI	CCWGG	2 cut(s)	65, 360
Bst4CI	ACNGT	2 cut(s)	226, 298
Bst6I	CTCTTC	2 cut(s)	332, 342
BstC8I	GCNNGC	1 cut(s)	173
BstDSI	CCRYGG	1 cut(s)	9
BstF5I	GGATG	1 cut(s)	433
BstKTI	GATC	1 cut(s)	279
BstMBI	GATC	1 cut(s)	276
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 14, 157, 572
BstNI	CCWGG	2 cut(s)	65, 360
BstNSI	RCATGY	1 cut(s)	209
BstSCI	CCNGG	3 cut(s)	63, 102, 358
BstV1I	GCAGC	2 cut(s)	17, 550
BstX2I	RGATCY	1 cut(s)	276
BstYI	RGATCY	1 cut(s)	276
BsuRI	GGCC	1 cut(s)	69
BtgI	CCRYGG	1 cut(s)	9
BtgZI	GCGATG	1 cut(s)	166
BtsCI	GGATG	1 cut(s)	433
Cac8I	GCNNGC	1 cut(s)	173
Cfr13I	GGNCC	1 cut(s)	67
Csp6I	GTAC	1 cut(s)	294
CspCI	CAANNNNNGTGG	2 cut(s)	423, 458
CviAII	CATG	4 cut(s)	10, 31, 206, 245
CviQI	GTAC	1 cut(s)	294
DpnI	GATC	1 cut(s)	278
DpnII	GATC	1 cut(s)	276
Eam1104I	CTCTTC	2 cut(s)	332, 342
EarI	CTCTTC	2 cut(s)	332, 342
Eco130I	CCWWGG	1 cut(s)	9
Eco57I	CTGAAG	3 cut(s)	5, 554, 576
EcoRII	CCWGG	2 cut(s)	63, 358
EcoT14I	CCWWGG	1 cut(s)	9
EcoT22I	ATGCAT	1 cut(s)	207
ErhI	CCWWGG	1 cut(s)	9
FaeI	CATG	4 cut(s)	13, 34, 209, 248
FaqI	GGGAC	1 cut(s)	86
FatI	CATG	4 cut(s)	9, 30, 205, 244
FauNDI	CATATG	1 cut(s)	333
Fnu4HI	GCNGC	3 cut(s)	6, 15, 564
FokI	GGATG	1 cut(s)	440
Fsp4HI	GCNGC	3 cut(s)	6, 15, 564
GluI	GCNGC	3 cut(s)	6, 15, 564
GsuI	CTGGAG	1 cut(s)	282
HaeIII	GGCC	1 cut(s)	69
HapII	CCGG	1 cut(s)	104
Hin1II	CATG	4 cut(s)	13, 34, 209, 248
HinfI	GANTC	2 cut(s)	75, 454
HpaII	CCGG	1 cut(s)	104
HphI	GGTGA	3 cut(s)	238, 365, 509
Hpy166II	GTNNAC	1 cut(s)	356
Hpy188I	TCNGA	1 cut(s)	24
Hpy188III	TCNNGA	1 cut(s)	458
Hpy8I	GTNNAC	1 cut(s)	356
HpyAV	CCTTC	5 cut(s)	70, 157, 194, 374, 529
HpyCH4III	ACNGT	2 cut(s)	226, 298
HpyCH4V	TGCA	4 cut(s)	17, 171, 205, 575
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 14, 157, 572
Hsp92II	CATG	4 cut(s)	13, 34, 209, 248
Kzo9I	GATC	1 cut(s)	276
LguI	GCTCTTC	1 cut(s)	332
LmnI	GCTCC	2 cut(s)	157, 383
Lsp1109I	GCAGC	2 cut(s)	17, 550
LweI	GCATC	1 cut(s)	396
MalI	GATC	1 cut(s)	278
MbiI	CCGCTC	1 cut(s)	160
MboI	GATC	1 cut(s)	276
MboII	GAAGA	4 cut(s)	349, 359, 538, 551
MflI	RGATCY	1 cut(s)	276
MluCI	AATT	1 cut(s)	109
MlyI	GAGTC	1 cut(s)	69
MmeI	TCCRAC	1 cut(s)	196
MnlI	CCTC	6 cut(s)	37, 46, 61, 140, 343, 494
Mph1103I	ATGCAT	1 cut(s)	207
MseI	TTAA	5 cut(s)	113, 210, 306, 320, 372
MslI	CAYNNNNRTG	1 cut(s)	137
MspI	CCGG	1 cut(s)	104
MspR9I	CCNGG	3 cut(s)	65, 104, 360
Mva1269I	GAATGC	1 cut(s)	173
MvaI	CCWGG	2 cut(s)	65, 360
MwoI	GCNNNNNNNGC	4 cut(s)	11, 14, 157, 572
NciI	CCSGG	1 cut(s)	104
NcoI	CCATGG	1 cut(s)	9
NdeI	CATATG	1 cut(s)	333
NdeII	GATC	1 cut(s)	276
NlaIII	CATG	4 cut(s)	13, 34, 209, 248
NsiI	ATGCAT	1 cut(s)	207
NspI	RCATGY	1 cut(s)	209
PciSI	GCTCTTC	1 cut(s)	332
PctI	GAATGC	1 cut(s)	173
PfeI	GAWTC	1 cut(s)	454
PkrI	GCNGC	3 cut(s)	7, 16, 565
PleI	GAGTC	1 cut(s)	69
PpsI	GAGTC	1 cut(s)	69
Psp6I	CCWGG	2 cut(s)	63, 358
PspGI	CCWGG	2 cut(s)	63, 358
PspPI	GGNCC	1 cut(s)	67
PsuI	RGATCY	1 cut(s)	276
RsaI	GTAC	1 cut(s)	295
RsaNI	GTAC	1 cut(s)	294
RseI	CAYNNNNRTG	1 cut(s)	137
SapI	GCTCTTC	1 cut(s)	332
SaqAI	TTAA	5 cut(s)	113, 210, 306, 320, 372
SatI	GCNGC	3 cut(s)	6, 15, 564
Sau3AI	GATC	1 cut(s)	276
Sau96I	GGNCC	1 cut(s)	67
ScaI	AGTACT	1 cut(s)	295
SchI	GAGTC	1 cut(s)	69
ScrFI	CCNGG	3 cut(s)	65, 104, 360
SetI	ASST	9 cut(s)	29, 38, 147, 216, 378, 388, 398, 486, 565
SfaNI	GCATC	1 cut(s)	396
SmiMI	CAYNNNNRTG	1 cut(s)	137
SmlI	CTYRAG	1 cut(s)	146
SmoI	CTYRAG	1 cut(s)	146
Sse9I	AATT	1 cut(s)	109
SsiI	CCGC	1 cut(s)	160
StyD4I	CCNGG	3 cut(s)	63, 102, 358
StyI	CCWWGG	1 cut(s)	9
TaaI	ACNGT	2 cut(s)	226, 298
TaqI	TCGA	2 cut(s)	398, 439
TasI	AATT	1 cut(s)	109
TatI	WGTACW	1 cut(s)	293
TfiI	GAWTC	1 cut(s)	454
Tru1I	TTAA	5 cut(s)	113, 210, 306, 320, 372
Tru9I	TTAA	5 cut(s)	113, 210, 306, 320, 372
TseI	GCWGC	3 cut(s)	5, 14, 563
TspDTI	ATGAA	2 cut(s)	261, 350
XceI	RCATGY	1 cut(s)	209
ZrmI	AGTACT	1 cut(s)	295
Zsp2I	ATGCAT	1 cut(s)	207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.