Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0012078

Physical Location & Seq

Genomic Coordinates Forward (+)

31401149 .. 31403262

Gene Structure 2114 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ31581

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGACAATGGCAGCCATGGCTGCACTCCAGAGCTCGATGACCTCCCTTTCTCTCTGCTCTAACTCCTTCCTGGGCCAACGCCTCTCACCCCTCACTATTTATCCTGTTCCGGGTAAGTTAACATCAAAGCCTTGTCTGATTGTAGTGAAGTTGAAGCAATGGGAGCGGAAGGAATGCAAGCCAAACAGTCTTCCAATTTTACACAAAATGCATGTTAAGGTTGGAGATACAGTGAAAATCATATCTGGACATGAAAAGGGTAAAACTGGAGAGATAACAAAGATCTTTAAGCACAATAGTACTGTGATAGTTAAAGACATAAATTTGAAGACAAAGCATATGAAGAGCAGAGAAGAGGGTGAACCAGGACAGATTATTAAGGTAGAAGGAGCTATCCACAGCTCAAATGTGATGCTTTACTCGAAAGAAAAGAACGTAGCAAGTCGTGTGGGTCATAAGATCCTGGAAAATGGACAACGAGTTCGCTACCTCATTAAAACTGGTGAGATAATAGACAATGCAGAGAACTGGAAGAAGCTGAAAGAAGAAAAAAAAAAACTGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009941 GO:0009987 GO:0010467 GO:0016043 GO:0019538 GO:0031967 GO:0031975 GO:0032544 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0071840 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

KOW ribosomal_L24

Protein Analysis

188

Amino Acids

21.13

Weight (kDa)

9.91

Isoelectric Point (pI)

29.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KOW	PF00467	74 - 105	2e-09	KOW motif
ribosomal_L24	PF17136	107 - 171	4.2e-20	Large ribosomal subunit protein uL24, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012078)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54600 AT5G54600
fragaria_vesca	FvH4_3g21600
malus_domestica	MD03G1214300.v1.1 MD11G1229300.v1.1
prunus_persica	Prupe.4G200400_v2.0.a1
pyrus_communis	pycom03g16300 pycom11g20300
rosa_chinensis	RchiOBHm_Chr5g0037061
rosa_laevigata	RLG00000033747
rosa_multiflora	Rmu_sc0009252.1_g000002 Rmu_sc0014990.1_g000002
rosa_roxburghii	Rroxscaffold_1G00043890
rosa_rugosa	Rorug05G0160100
rosa_samantha	Rh5AG252200 Rh5BG254000 Rh5CG286600 Rh5DG262500
rosa_wichuraiana	Rw5G023250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	166
AciI	CCGC	1 cut(s)	166
AclWI	GGATC	1 cut(s)	454
AcsI	RAATTY	1 cut(s)	322
AfaI	GTAC	1 cut(s)	301
AfiI	CCNNNNNNNGG	1 cut(s)	110
AgsI	TTSAA	2 cut(s)	154, 328
AjnI	CCWGG	3 cut(s)	69, 364, 462
AloI	GAACNNNNNNTCC	2 cut(s)	465, 497
AluBI	AGCT	4 cut(s)	33, 392, 402, 538
AluI	AGCT	4 cut(s)	33, 392, 402, 538
Alw21I	GWGCWC	1 cut(s)	35
AlwI	GGATC	1 cut(s)	454
AoxI	GGCC	1 cut(s)	73
ApeKI	GCWGC	2 cut(s)	11, 20
ApoI	RAATTY	1 cut(s)	322
ArsI	GACNNNNNNTTYG	2 cut(s)	465, 497
AspS9I	GGNCC	1 cut(s)	73
AsuC2I	CCSGG	1 cut(s)	111
AsuHPI	GGTGA	3 cut(s)	78, 371, 515
BanII	GRGCYC	1 cut(s)	35
BbsI	GAAGAC	2 cut(s)	182, 335
Bbv12I	GWGCWC	1 cut(s)	35
BbvI	GCAGC	2 cut(s)	7, 23
BciT130I	CCWGG	3 cut(s)	71, 366, 464
BcnI	CCSGG	1 cut(s)	111
BglII	AGATCT	1 cut(s)	282
BisI	GCNGC	2 cut(s)	12, 21
BlsI	GCNGC	2 cut(s)	13, 22
BmcAI	AGTACT	1 cut(s)	301
Bme1390I	CCNGG	4 cut(s)	71, 111, 366, 464
BmgT120I	GGNCC	1 cut(s)	73
BmrFI	CCNGG	4 cut(s)	71, 111, 366, 464
BmsI	GCATC	1 cut(s)	402
BpiI	GAAGAC	2 cut(s)	182, 335
BpmI	CTGGAG	2 cut(s)	11, 288
BpuMI	CCSGG	1 cut(s)	111
BsaJI	CCNNGG	2 cut(s)	15, 70
BsaXI	ACNNNNNCTCC	2 cut(s)	216, 246
Bsc4I	CCNNNNNNNGG	1 cut(s)	110
Bse1I	ACTGG	3 cut(s)	271, 505, 533
Bse3DI	GCAATG	1 cut(s)	164
BseBI	CCWGG	3 cut(s)	71, 366, 464
BseDI	CCNNGG	2 cut(s)	15, 70
BseLI	CCNNNNNNNGG	1 cut(s)	110
BseMI	GCAATG	1 cut(s)	164
BseNI	ACTGG	3 cut(s)	271, 505, 533
BseXI	GCAGC	2 cut(s)	7, 23
BsgI	GTGCAG	1 cut(s)	6
BshFI	GGCC	1 cut(s)	75
BsiHKAI	GWGCWC	1 cut(s)	35
BsiSI	CCGG	1 cut(s)	110
BslI	CCNNNNNNNGG	1 cut(s)	110
BsmI	GAATGC	1 cut(s)	179
BsnI	GGCC	1 cut(s)	75
Bsp1286I	GDGCHC	1 cut(s)	35
Bsp143I	GATC	2 cut(s)	282, 459
Bsp19I	CCATGG	1 cut(s)	15
BspACI	CCGC	1 cut(s)	166
BspANI	GGCC	1 cut(s)	75
BspPI	GGATC	1 cut(s)	454
BspQI	GCTCTTC	1 cut(s)	338
BsrBI	CCGCTC	1 cut(s)	166
BsrDI	GCAATG	1 cut(s)	164
BsrI	ACTGG	3 cut(s)	271, 505, 533
BssECI	CCNNGG	2 cut(s)	15, 70
BssMI	GATC	2 cut(s)	282, 459
BssT1I	CCWWGG	1 cut(s)	15
Bst2UI	CCWGG	3 cut(s)	71, 366, 464
Bst4CI	ACNGT	3 cut(s)	188, 232, 304
Bst6I	CTCTTC	2 cut(s)	338, 348
BstC8I	GCNNGC	1 cut(s)	179
BstDSI	CCRYGG	1 cut(s)	15
BstKTI	GATC	2 cut(s)	285, 462
BstMBI	GATC	2 cut(s)	282, 459
BstMWI	GCNNNNNNNGC	3 cut(s)	17, 20, 163
BstNI	CCWGG	3 cut(s)	71, 366, 464
BstNSI	RCATGY	1 cut(s)	215
BstSCI	CCNGG	4 cut(s)	69, 109, 364, 462
BstV1I	GCAGC	2 cut(s)	7, 23
BstV2I	GAAGAC	2 cut(s)	182, 335
BstX2I	RGATCY	2 cut(s)	282, 459
BstYI	RGATCY	2 cut(s)	282, 459
BsuRI	GGCC	1 cut(s)	75
BtgI	CCRYGG	1 cut(s)	15
BtsIMutI	CAGTG	1 cut(s)	237
Cac8I	GCNNGC	1 cut(s)	179
Cfr13I	GGNCC	1 cut(s)	73
Csp6I	GTAC	1 cut(s)	300
CspCI	CAANNNNNGTGG	2 cut(s)	429, 464
CviAII	CATG	3 cut(s)	16, 212, 251
CviJI	RGCY	9 cut(s)	14, 20, 33, 75, 130, 181, 392, 402, 538
CviKI_1	RGCY	9 cut(s)	14, 20, 33, 75, 130, 181, 392, 402, 538
CviQI	GTAC	1 cut(s)	300
DpnI	GATC	2 cut(s)	284, 461
DpnII	GATC	2 cut(s)	282, 459
Eam1104I	CTCTTC	2 cut(s)	338, 348
EarI	CTCTTC	2 cut(s)	338, 348
Ecl136II	GAGCTC	1 cut(s)	33
Eco130I	CCWWGG	1 cut(s)	15
Eco24I	GRGCYC	1 cut(s)	35
Eco53kI	GAGCTC	1 cut(s)	33
EcoICRI	GAGCTC	1 cut(s)	33
EcoRII	CCWGG	3 cut(s)	69, 364, 462
EcoT14I	CCWWGG	1 cut(s)	15
EcoT22I	ATGCAT	1 cut(s)	213
EcoT38I	GRGCYC	1 cut(s)	35
ErhI	CCWWGG	1 cut(s)	15
FaeI	CATG	3 cut(s)	19, 215, 254
FaiI	YATR	8 cut(s)	17, 213, 242, 252, 320, 339, 341, 456
FatI	CATG	3 cut(s)	15, 211, 250
FauNDI	CATATG	1 cut(s)	339
Fnu4HI	GCNGC	2 cut(s)	12, 21
FriOI	GRGCYC	1 cut(s)	35
Fsp4HI	GCNGC	2 cut(s)	12, 21
GluI	GCNGC	2 cut(s)	12, 21
GsuI	CTGGAG	2 cut(s)	11, 288
HaeIII	GGCC	1 cut(s)	75
HapII	CCGG	1 cut(s)	110
Hin1II	CATG	3 cut(s)	19, 215, 254
HincII	GTYRAC	1 cut(s)	120
HindII	GTYRAC	1 cut(s)	120
HpaI	GTTAAC	1 cut(s)	120
HpaII	CCGG	1 cut(s)	110
HphI	GGTGA	3 cut(s)	78, 371, 515
Hpy166II	GTNNAC	2 cut(s)	120, 362
Hpy188I	TCNGA	1 cut(s)	138
Hpy188III	TCNNGA	2 cut(s)	28, 246
Hpy8I	GTNNAC	2 cut(s)	120, 362
HpyAV	CCTTC	3 cut(s)	76, 163, 380
HpyCH4III	ACNGT	3 cut(s)	188, 232, 304
HpyCH4IV	ACGT	1 cut(s)	435
HpyCH4V	TGCA	4 cut(s)	23, 177, 211, 521
HpyF10VI	GCNNNNNNNGC	3 cut(s)	17, 20, 163
HpySE526I	ACGT	1 cut(s)	435
Hsp92II	CATG	3 cut(s)	19, 215, 254
KspAI	GTTAAC	1 cut(s)	120
Kzo9I	GATC	2 cut(s)	282, 459
LguI	GCTCTTC	1 cut(s)	338
LmnI	GCTCC	2 cut(s)	163, 389
Lsp1109I	GCAGC	2 cut(s)	7, 23
LweI	GCATC	1 cut(s)	402
MaeII	ACGT	1 cut(s)	435
MalI	GATC	2 cut(s)	284, 461
MbiI	CCGCTC	1 cut(s)	166
MboI	GATC	2 cut(s)	282, 459
MboII	GAAGA	6 cut(s)	182, 340, 355, 365, 544, 557
MflI	RGATCY	2 cut(s)	282, 459
MhlI	GDGCHC	1 cut(s)	35
MluCI	AATT	2 cut(s)	195, 322
MmeI	TCCRAC	1 cut(s)	202
MnlI	CCTC	5 cut(s)	52, 92, 101, 349, 500
Mph1103I	ATGCAT	1 cut(s)	213
MseI	TTAA	6 cut(s)	119, 216, 288, 312, 378, 495
MspI	CCGG	1 cut(s)	110
MspR9I	CCNGG	4 cut(s)	71, 111, 366, 464
Mva1269I	GAATGC	1 cut(s)	179
MvaI	CCWGG	3 cut(s)	71, 366, 464
MwoI	GCNNNNNNNGC	3 cut(s)	17, 20, 163
NciI	CCSGG	1 cut(s)	111
NcoI	CCATGG	1 cut(s)	15
NdeI	CATATG	1 cut(s)	339
NdeII	GATC	2 cut(s)	282, 459
NlaIII	CATG	3 cut(s)	19, 215, 254
NsiI	ATGCAT	1 cut(s)	213
NspI	RCATGY	1 cut(s)	215
PciSI	GCTCTTC	1 cut(s)	338
PctI	GAATGC	1 cut(s)	179
PfoI	TCCNGGA	1 cut(s)	462
PkrI	GCNGC	2 cut(s)	13, 22
Psp124BI	GAGCTC	1 cut(s)	35
Psp6I	CCWGG	3 cut(s)	69, 364, 462
PspGI	CCWGG	3 cut(s)	69, 364, 462
PspPI	GGNCC	1 cut(s)	73
PsuI	RGATCY	2 cut(s)	282, 459
RsaI	GTAC	1 cut(s)	301
RsaNI	GTAC	1 cut(s)	300
SacI	GAGCTC	1 cut(s)	35
SapI	GCTCTTC	1 cut(s)	338
SaqAI	TTAA	6 cut(s)	119, 216, 288, 312, 378, 495
SatI	GCNGC	2 cut(s)	12, 21
Sau3AI	GATC	2 cut(s)	282, 459
Sau96I	GGNCC	1 cut(s)	73
ScaI	AGTACT	1 cut(s)	301
ScrFI	CCNGG	4 cut(s)	71, 111, 366, 464
SduI	GDGCHC	1 cut(s)	35
SetI	ASST	9 cut(s)	35, 44, 222, 384, 394, 404, 438, 492, 540
SfaNI	GCATC	1 cut(s)	402
Sse9I	AATT	2 cut(s)	195, 322
SsiI	CCGC	1 cut(s)	166
SstI	GAGCTC	1 cut(s)	35
StyD4I	CCNGG	4 cut(s)	69, 109, 364, 462
StyI	CCWWGG	1 cut(s)	15
TaaI	ACNGT	3 cut(s)	188, 232, 304
TaiI	ACGT	1 cut(s)	438
TaqI	TCGA	2 cut(s)	35, 422
TasI	AATT	2 cut(s)	195, 322
TatI	WGTACW	1 cut(s)	299
Tru1I	TTAA	6 cut(s)	119, 216, 288, 312, 378, 495
Tru9I	TTAA	6 cut(s)	119, 216, 288, 312, 378, 495
TscAI	CASTG	1 cut(s)	237
TseI	GCWGC	2 cut(s)	11, 20
TspDTI	ATGAA	2 cut(s)	267, 356
TspRI	CASTG	1 cut(s)	237
XapI	RAATTY	1 cut(s)	322
XceI	RCATGY	1 cut(s)	215
ZrmI	AGTACT	1 cut(s)	301
Zsp2I	ATGCAT	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.