Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0012078

Physical Location & Seq

Genomic Coordinates Reverse (-)

17454936 .. 17457184

Gene Structure 2249 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g16300.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGCAGCCATGGCTGCACTGCAGAGCTCCATGACCTCTCTTTCTCTCTCCTCTAACTCCTTCCTCGGCCAAAGCCTCTTCCCCCCAACTCTTTACCCTGTCCCGGCCAAGTTAACAGCAAACCCTTGCCTCATCGTCGTGAAGCTCAAAAGATGGGAGCGGAAGGAATGCAAGCCTAACAGCCTTCCAGTTTTGCACAAAATGCATGTTAAGGTTGGGGATACAGTGAAAGTCATATCGGGACATGAAAAGGGTAAAACTGGAGAGGTAACAAAGATTTTTAAGCACAATAGTACCGTGATAGTGAAGGAAATAAACTTGAAGACGAAGCATATGAAGAGCAGGGAAGAGGGAGAACCAGGACAGATTCTTAAGGTAGAAGGAGCTATACACGGCTCGAACGTGATGCTTTTCTCGAAAGAAAAGAATGTAGCAAGTAGGGTGGGTCATAAAATTCTGGAAAATGGACAACGAGTTCGCTACCTCATCAAAACTGGTGAAATAATAGATAACGCCGAGAACTGGAAAAAATTGAAGGAAGAGAAAAAGAAAACTGAAGAAGCCGTCACTGCTGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009941 GO:0009987 GO:0010467 GO:0016043 GO:0019538 GO:0031967 GO:0031975 GO:0032544 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0071840 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

KOW ribosomal_L24

Protein Analysis

193

Amino Acids

21.32

Weight (kDa)

9.8

Isoelectric Point (pI)

40.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012078)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54600 AT5G54600
fragaria_vesca	FvH4_3g21600
malus_domestica	MD03G1214300.v1.1 MD11G1229300.v1.1
prunus_persica	Prupe.4G200400_v2.0.a1
pyrus_communis	pycom03g16300 pycom11g20300
rosa_chinensis	RchiOBHm_Chr5g0037061
rosa_laevigata	RLG00000033747
rosa_multiflora	Rmu_sc0009252.1_g000002 Rmu_sc0014990.1_g000002
rosa_roxburghii	Rroxscaffold_1G00043890
rosa_rugosa	Rorug05G0160100
rosa_samantha	Rh5AG252200 Rh5BG254000 Rh5CG286600 Rh5DG262500
rosa_wichuraiana	Rw5G023250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	160
AciI	CCGC	1 cut(s)	160
AcoI	YGGCCR	2 cut(s)	67, 105
AcsI	RAATTY	1 cut(s)	453
AcuI	CTGAAG	1 cut(s)	576
AfaI	GTAC	1 cut(s)	295
AfiI	CCNNNNNNNGG	2 cut(s)	103, 522
AflII	CTTAAG	1 cut(s)	371
AgsI	TTSAA	2 cut(s)	322, 535
AjnI	CCWGG	1 cut(s)	358
AloI	GAACNNNNNNTCC	2 cut(s)	459, 491
AluBI	AGCT	3 cut(s)	27, 145, 386
AluI	AGCT	3 cut(s)	27, 145, 386
Alw21I	GWGCWC	1 cut(s)	29
AoxI	GGCC	2 cut(s)	67, 105
ApeKI	GCWGC	3 cut(s)	5, 14, 572
ApoI	RAATTY	1 cut(s)	453
ArsI	GACNNNNNNTTYG	2 cut(s)	459, 491
AsuC2I	CCSGG	1 cut(s)	104
AsuHPI	GGTGA	1 cut(s)	509
BaeI	ACNNNNGTAYC	2 cut(s)	277, 310
BanII	GRGCYC	1 cut(s)	29
BarI	GAAGNNNNNNTAC	2 cut(s)	372, 404
BbsI	GAAGAC	1 cut(s)	329
Bbv12I	GWGCWC	1 cut(s)	29
BbvI	GCAGC	2 cut(s)	17, 559
BccI	CCATC	1 cut(s)	147
BceAI	ACGGC	2 cut(s)	409, 548
BcgI	CGANNNNNNTGC	2 cut(s)	388, 422
BciT130I	CCWGG	1 cut(s)	360
BciVI	GTATCC	1 cut(s)	214
BcnI	CCSGG	1 cut(s)	104
BfmI	CTRYAG	1 cut(s)	20
BfrI	CTTAAG	1 cut(s)	371
BfuI	GTATCC	1 cut(s)	214
BisI	GCNGC	3 cut(s)	6, 15, 573
BlsI	GCNGC	3 cut(s)	7, 16, 574
Bme1390I	CCNGG	2 cut(s)	104, 360
BmrFI	CCNGG	2 cut(s)	104, 360
BmsI	GCATC	1 cut(s)	396
BpiI	GAAGAC	1 cut(s)	329
BpmI	CTGGAG	1 cut(s)	282
BpuMI	CCSGG	1 cut(s)	104
BsaJI	CCNNGG	2 cut(s)	9, 64
Bsc4I	CCNNNNNNNGG	2 cut(s)	103, 522
Bse1I	ACTGG	4 cut(s)	188, 265, 499, 527
BseBI	CCWGG	1 cut(s)	360
BseDI	CCNNGG	2 cut(s)	9, 64
BseLI	CCNNNNNNNGG	2 cut(s)	103, 522
BseNI	ACTGG	4 cut(s)	188, 265, 499, 527
BseRI	GAGGAG	1 cut(s)	40
BseXI	GCAGC	2 cut(s)	17, 559
BshFI	GGCC	2 cut(s)	69, 107
BsiHKAI	GWGCWC	1 cut(s)	29
BsiSI	CCGG	1 cut(s)	104
BslFI	GGGAC	2 cut(s)	86, 255
BslI	CCNNNNNNNGG	2 cut(s)	103, 522
BsmFI	GGGAC	2 cut(s)	86, 255
BsmI	GAATGC	1 cut(s)	173
BsnI	GGCC	2 cut(s)	69, 107
Bsp1286I	GDGCHC	1 cut(s)	29
Bsp19I	CCATGG	1 cut(s)	9
BspACI	CCGC	1 cut(s)	160
BspANI	GGCC	2 cut(s)	69, 107
BspMAI	CTGCAG	1 cut(s)	24
BspQI	GCTCTTC	1 cut(s)	332
BspTI	CTTAAG	1 cut(s)	371
BsrBI	CCGCTC	1 cut(s)	160
BsrI	ACTGG	4 cut(s)	188, 265, 499, 527
BssECI	CCNNGG	2 cut(s)	9, 64
BssT1I	CCWWGG	1 cut(s)	9
Bst2UI	CCWGG	1 cut(s)	360
Bst4CI	ACNGT	2 cut(s)	226, 298
Bst6I	CTCTTC	4 cut(s)	83, 332, 342, 534
BstAFI	CTTAAG	1 cut(s)	371
BstAPI	GCANNNNNTGC	1 cut(s)	202
BstC8I	GCNNGC	1 cut(s)	173
BstDSI	CCRYGG	1 cut(s)	9
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 14, 202, 569
BstNI	CCWGG	1 cut(s)	360
BstNSI	RCATGY	1 cut(s)	209
BstSCI	CCNGG	2 cut(s)	102, 358
BstSFI	CTRYAG	1 cut(s)	20
BstV1I	GCAGC	2 cut(s)	17, 559
BstV2I	GAAGAC	1 cut(s)	329
BsuI	GTATCC	1 cut(s)	214
BsuRI	GGCC	2 cut(s)	69, 107
BtgI	CCRYGG	1 cut(s)	9
BtsI	GCAGTG	2 cut(s)	17, 567
BtsIMutI	CAGTG	3 cut(s)	17, 231, 567
Cac8I	GCNNGC	1 cut(s)	173
Csp6I	GTAC	1 cut(s)	294
CspCI	CAANNNNNGTGG	2 cut(s)	423, 458
CviAII	CATG	4 cut(s)	10, 31, 206, 245
CviQI	GTAC	1 cut(s)	294
EaeI	YGGCCR	2 cut(s)	67, 105
Eam1104I	CTCTTC	4 cut(s)	83, 332, 342, 534
EarI	CTCTTC	4 cut(s)	83, 332, 342, 534
Ecl136II	GAGCTC	1 cut(s)	27
Eco130I	CCWWGG	1 cut(s)	9
Eco24I	GRGCYC	1 cut(s)	29
Eco53kI	GAGCTC	1 cut(s)	27
Eco57I	CTGAAG	1 cut(s)	576
EcoICRI	GAGCTC	1 cut(s)	27
EcoRII	CCWGG	1 cut(s)	358
EcoT14I	CCWWGG	1 cut(s)	9
EcoT22I	ATGCAT	1 cut(s)	207
EcoT38I	GRGCYC	1 cut(s)	29
ErhI	CCWWGG	1 cut(s)	9
FaeI	CATG	4 cut(s)	13, 34, 209, 248
FaiI	YATR	9 cut(s)	11, 32, 207, 236, 246, 333, 335, 389, 450
FaqI	GGGAC	2 cut(s)	86, 255
FatI	CATG	4 cut(s)	9, 30, 205, 244
FauNDI	CATATG	1 cut(s)	333
Fnu4HI	GCNGC	3 cut(s)	6, 15, 573
FriOI	GRGCYC	1 cut(s)	29
Fsp4HI	GCNGC	3 cut(s)	6, 15, 573
GluI	GCNGC	3 cut(s)	6, 15, 573
GsuI	CTGGAG	1 cut(s)	282
HaeIII	GGCC	2 cut(s)	69, 107
HapII	CCGG	1 cut(s)	104
Hin1II	CATG	4 cut(s)	13, 34, 209, 248
HincII	GTYRAC	1 cut(s)	114
HindII	GTYRAC	1 cut(s)	114
HinfI	GANTC	1 cut(s)	367
HpaI	GTTAAC	1 cut(s)	114
HpaII	CCGG	1 cut(s)	104
HphI	GGTGA	1 cut(s)	509
Hpy166II	GTNNAC	1 cut(s)	114
Hpy188III	TCNNGA	4 cut(s)	139, 240, 415, 458
Hpy8I	GTNNAC	1 cut(s)	114
Hpy99I	CGWCG	1 cut(s)	140
HpyAV	CCTTC	6 cut(s)	70, 157, 194, 301, 374, 529
HpyCH4III	ACNGT	2 cut(s)	226, 298
HpyCH4IV	ACGT	1 cut(s)	402
HpyCH4V	TGCA	5 cut(s)	17, 22, 171, 196, 205
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 14, 202, 569
HpySE526I	ACGT	1 cut(s)	402
Hsp92II	CATG	4 cut(s)	13, 34, 209, 248
KspAI	GTTAAC	1 cut(s)	114
LguI	GCTCTTC	1 cut(s)	332
LmnI	GCTCC	3 cut(s)	32, 157, 383
Lsp1109I	GCAGC	2 cut(s)	17, 559
LweI	GCATC	1 cut(s)	396
MaeII	ACGT	1 cut(s)	402
MaeIII	GTNAC	2 cut(s)	268, 565
MbiI	CCGCTC	1 cut(s)	160
MboII	GAAGA	6 cut(s)	70, 334, 349, 359, 551, 569
MhlI	GDGCHC	1 cut(s)	29
MluCI	AATT	2 cut(s)	453, 530
MnlI	CCTC	8 cut(s)	46, 61, 74, 86, 140, 259, 343, 494
Mph1103I	ATGCAT	1 cut(s)	207
MseI	TTAA	4 cut(s)	113, 210, 282, 372
MslI	CAYNNNNRTG	1 cut(s)	137
MspCI	CTTAAG	1 cut(s)	371
MspI	CCGG	1 cut(s)	104
MspR9I	CCNGG	2 cut(s)	104, 360
Mva1269I	GAATGC	1 cut(s)	173
MvaI	CCWGG	1 cut(s)	360
MwoI	GCNNNNNNNGC	4 cut(s)	11, 14, 202, 569
NciI	CCSGG	1 cut(s)	104
NcoI	CCATGG	1 cut(s)	9
NdeI	CATATG	1 cut(s)	333
NlaIII	CATG	4 cut(s)	13, 34, 209, 248
NmeAIII	GCCGAG	2 cut(s)	45, 541
NmuCI	GTSAC	1 cut(s)	565
NsiI	ATGCAT	1 cut(s)	207
NspI	RCATGY	1 cut(s)	209
PciSI	GCTCTTC	1 cut(s)	332
PcsI	WCGNNNNNNNCGW	1 cut(s)	399
PctI	GAATGC	1 cut(s)	173
PfeI	GAWTC	1 cut(s)	367
PkrI	GCNGC	3 cut(s)	7, 16, 574
Psp124BI	GAGCTC	1 cut(s)	29
Psp6I	CCWGG	1 cut(s)	358
PspGI	CCWGG	1 cut(s)	358
PstI	CTGCAG	1 cut(s)	24
RsaI	GTAC	1 cut(s)	295
RsaNI	GTAC	1 cut(s)	294
RseI	CAYNNNNRTG	1 cut(s)	137
SacI	GAGCTC	1 cut(s)	29
SapI	GCTCTTC	1 cut(s)	332
SaqAI	TTAA	4 cut(s)	113, 210, 282, 372
SatI	GCNGC	3 cut(s)	6, 15, 573
ScrFI	CCNGG	2 cut(s)	104, 360
SduI	GDGCHC	1 cut(s)	29
SetI	ASST	9 cut(s)	29, 38, 147, 216, 270, 378, 388, 405, 486
SfaNI	GCATC	1 cut(s)	396
SfcI	CTRYAG	1 cut(s)	20
SmiMI	CAYNNNNRTG	1 cut(s)	137
SmlI	CTYRAG	1 cut(s)	371
SmoI	CTYRAG	1 cut(s)	371
Sse9I	AATT	2 cut(s)	453, 530
SsiI	CCGC	1 cut(s)	160
SstI	GAGCTC	1 cut(s)	29
StyD4I	CCNGG	2 cut(s)	102, 358
StyI	CCWWGG	1 cut(s)	9
TaaI	ACNGT	2 cut(s)	226, 298
TaiI	ACGT	1 cut(s)	405
TaqI	TCGA	2 cut(s)	398, 416
TasI	AATT	2 cut(s)	453, 530
TfiI	GAWTC	1 cut(s)	367
Tru1I	TTAA	4 cut(s)	113, 210, 282, 372
Tru9I	TTAA	4 cut(s)	113, 210, 282, 372
TscAI	CASTG	3 cut(s)	24, 231, 574
TseFI	GTSAC	1 cut(s)	565
TseI	GCWGC	3 cut(s)	5, 14, 572
Tsp45I	GTSAC	1 cut(s)	565
TspDTI	ATGAA	2 cut(s)	261, 350
TspRI	CASTG	3 cut(s)	24, 231, 574
Vha464I	CTTAAG	1 cut(s)	371
XapI	RAATTY	1 cut(s)	453
XceI	RCATGY	1 cut(s)	209
Zsp2I	ATGCAT	1 cut(s)	207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.