Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0012078

Physical Location & Seq

Genomic Coordinates Forward (+)

32348924 .. 32351061

Gene Structure 2138 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG252200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGTTGTGCTCTCCTCTCTCTCGGACTCTGTGTGTGTGTGTTATCCATTCATCAGTGACAGCCAAATTCAGCGAAGCAAGGACAATGGCAGCCATGGCTGCACTCCAGAGCTCGATGACCTCCCTTTCTCTCTGCTCTAACTCCTTCCTGGGCCAACGCCTCTCACCCCTCACTATTTATCCTGTTCCGGGTAAGTTAACATCAAAGCCTTGTCTGATTGTAGTGAAGTTGAAGCAATGGGAGCGGAAGGAATGCAAGCCAAACAGTCTTCCAATTTTACACAAAATGCATGTTAAGGTTGGAGATACAGTGAAAATCATATCTGGACATGAAAAGGGTAAAACTGGAGAGATAACAAAGATCTTTAAGCACAATAGTACTGTGATAGTTAAAGACATAAATTTGAAGACAAAGCATATGAAGAGCAGAGAAGAGGGTGAACCAGGACAGATTATTAAGGTAGAAGGAGCTATCCACAGCTCAAATGTGATGCTTTACTCGAAAGAAAAGAACGTAGCAAGTCGTGTGGGTCATAAGATCCTGGAAAATGGACAACGAGTTCGCTACCTCATTAAAACTGGTGAGATAATAGACAATGCAGAGAACTGGAAGAAGCTGAAAGAAGAAGAAAAAAAAACTGAAGTAGCTGTATCTGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009941 GO:0009987 GO:0010467 GO:0016043 GO:0019538 GO:0031967 GO:0031975 GO:0032544 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0071840 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

KOW ribosomal_L24

Protein Analysis

219

Amino Acids

24.33

Weight (kDa)

9.68

Isoelectric Point (pI)

34.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KOW	PF00467	100 - 131	2.6e-09	KOW motif
ribosomal_L24	PF17136	133 - 197	5.8e-20	Large ribosomal subunit protein uL24, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0012078)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54600 AT5G54600
fragaria_vesca	FvH4_3g21600
malus_domestica	MD03G1214300.v1.1 MD11G1229300.v1.1
prunus_persica	Prupe.4G200400_v2.0.a1
pyrus_communis	pycom03g16300 pycom11g20300
rosa_chinensis	RchiOBHm_Chr5g0037061
rosa_laevigata	RLG00000033747
rosa_multiflora	Rmu_sc0009252.1_g000002 Rmu_sc0014990.1_g000002
rosa_roxburghii	Rroxscaffold_1G00043890
rosa_rugosa	Rorug05G0160100
rosa_samantha	Rh5AG252200 Rh5BG254000 Rh5CG286600 Rh5DG262500
rosa_wichuraiana	Rw5G023250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	244
AciI	CCGC	1 cut(s)	244
AclWI	GGATC	1 cut(s)	532
AcsI	RAATTY	2 cut(s)	65, 400
AcuI	CTGAAG	1 cut(s)	660
AfaI	GTAC	1 cut(s)	379
AfiI	CCNNNNNNNGG	1 cut(s)	188
AgsI	TTSAA	2 cut(s)	232, 406
AjnI	CCWGG	3 cut(s)	147, 442, 540
AloI	GAACNNNNNNTCC	2 cut(s)	543, 575
AluBI	AGCT	5 cut(s)	111, 470, 480, 616, 647
AluI	AGCT	5 cut(s)	111, 470, 480, 616, 647
Alw21I	GWGCWC	2 cut(s)	11, 113
AlwI	GGATC	1 cut(s)	532
AoxI	GGCC	1 cut(s)	151
ApeKI	GCWGC	2 cut(s)	89, 98
ApoI	RAATTY	2 cut(s)	65, 400
ArsI	GACNNNNNNTTYG	2 cut(s)	543, 575
AspS9I	GGNCC	1 cut(s)	151
AsuC2I	CCSGG	1 cut(s)	189
AsuHPI	GGTGA	3 cut(s)	156, 449, 593
BanII	GRGCYC	1 cut(s)	113
BbsI	GAAGAC	2 cut(s)	260, 413
Bbv12I	GWGCWC	2 cut(s)	11, 113
BbvI	GCAGC	2 cut(s)	85, 101
BciT130I	CCWGG	3 cut(s)	149, 444, 542
BcnI	CCSGG	1 cut(s)	189
BglII	AGATCT	1 cut(s)	360
BisI	GCNGC	2 cut(s)	90, 99
BlsI	GCNGC	2 cut(s)	91, 100
BmcAI	AGTACT	1 cut(s)	379
Bme1390I	CCNGG	4 cut(s)	149, 189, 444, 542
BmgT120I	GGNCC	1 cut(s)	151
BmrFI	CCNGG	4 cut(s)	149, 189, 444, 542
BmsI	GCATC	1 cut(s)	480
BpiI	GAAGAC	2 cut(s)	260, 413
BpmI	CTGGAG	2 cut(s)	89, 366
BpuMI	CCSGG	1 cut(s)	189
BsaJI	CCNNGG	2 cut(s)	93, 148
BsaXI	ACNNNNNCTCC	2 cut(s)	294, 324
Bsc4I	CCNNNNNNNGG	1 cut(s)	188
Bse1I	ACTGG	3 cut(s)	349, 583, 611
Bse3DI	GCAATG	1 cut(s)	242
BseBI	CCWGG	3 cut(s)	149, 444, 542
BseDI	CCNNGG	2 cut(s)	93, 148
BseLI	CCNNNNNNNGG	1 cut(s)	188
BseMI	GCAATG	1 cut(s)	242
BseNI	ACTGG	3 cut(s)	349, 583, 611
BseXI	GCAGC	2 cut(s)	85, 101
BsgI	GTGCAG	1 cut(s)	84
BshFI	GGCC	1 cut(s)	153
BsiHKAI	GWGCWC	2 cut(s)	11, 113
BsiSI	CCGG	1 cut(s)	188
BslI	CCNNNNNNNGG	1 cut(s)	188
BsmI	GAATGC	1 cut(s)	257
BsnI	GGCC	1 cut(s)	153
Bsp1286I	GDGCHC	2 cut(s)	11, 113
Bsp143I	GATC	2 cut(s)	360, 537
Bsp19I	CCATGG	1 cut(s)	93
BspACI	CCGC	1 cut(s)	244
BspANI	GGCC	1 cut(s)	153
BspPI	GGATC	1 cut(s)	532
BspQI	GCTCTTC	1 cut(s)	416
BsrBI	CCGCTC	1 cut(s)	244
BsrDI	GCAATG	1 cut(s)	242
BsrI	ACTGG	3 cut(s)	349, 583, 611
BssECI	CCNNGG	2 cut(s)	93, 148
BssMI	GATC	2 cut(s)	360, 537
BssT1I	CCWWGG	1 cut(s)	93
Bst2UI	CCWGG	3 cut(s)	149, 444, 542
Bst4CI	ACNGT	3 cut(s)	266, 310, 382
Bst6I	CTCTTC	2 cut(s)	416, 426
BstC8I	GCNNGC	1 cut(s)	257
BstDSI	CCRYGG	1 cut(s)	93
BstKTI	GATC	2 cut(s)	363, 540
BstMBI	GATC	2 cut(s)	360, 537
BstMWI	GCNNNNNNNGC	4 cut(s)	95, 98, 241, 653
BstNI	CCWGG	3 cut(s)	149, 444, 542
BstNSI	RCATGY	1 cut(s)	293
BstSCI	CCNGG	4 cut(s)	147, 187, 442, 540
BstV1I	GCAGC	2 cut(s)	85, 101
BstV2I	GAAGAC	2 cut(s)	260, 413
BstX2I	RGATCY	2 cut(s)	360, 537
BstYI	RGATCY	2 cut(s)	360, 537
BsuRI	GGCC	1 cut(s)	153
BtgI	CCRYGG	1 cut(s)	93
BtsIMutI	CAGTG	2 cut(s)	60, 315
Cac8I	GCNNGC	1 cut(s)	257
Cfr13I	GGNCC	1 cut(s)	151
Csp6I	GTAC	1 cut(s)	378
CspCI	CAANNNNNGTGG	2 cut(s)	507, 542
CviAII	CATG	3 cut(s)	94, 290, 329
CviQI	GTAC	1 cut(s)	378
DpnI	GATC	2 cut(s)	362, 539
DpnII	GATC	2 cut(s)	360, 537
Eam1104I	CTCTTC	2 cut(s)	416, 426
EarI	CTCTTC	2 cut(s)	416, 426
Ecl136II	GAGCTC	1 cut(s)	111
Eco130I	CCWWGG	1 cut(s)	93
Eco24I	GRGCYC	1 cut(s)	113
Eco53kI	GAGCTC	1 cut(s)	111
Eco57I	CTGAAG	1 cut(s)	660
EcoICRI	GAGCTC	1 cut(s)	111
EcoRII	CCWGG	3 cut(s)	147, 442, 540
EcoT14I	CCWWGG	1 cut(s)	93
EcoT22I	ATGCAT	1 cut(s)	291
EcoT38I	GRGCYC	1 cut(s)	113
ErhI	CCWWGG	1 cut(s)	93
FaeI	CATG	3 cut(s)	97, 293, 332
FaiI	YATR	8 cut(s)	95, 291, 320, 330, 398, 417, 419, 534
FatI	CATG	3 cut(s)	93, 289, 328
FauNDI	CATATG	1 cut(s)	417
Fnu4HI	GCNGC	2 cut(s)	90, 99
FriOI	GRGCYC	1 cut(s)	113
Fsp4HI	GCNGC	2 cut(s)	90, 99
GluI	GCNGC	2 cut(s)	90, 99
GsuI	CTGGAG	2 cut(s)	89, 366
HaeIII	GGCC	1 cut(s)	153
HapII	CCGG	1 cut(s)	188
Hin1II	CATG	3 cut(s)	97, 293, 332
HincII	GTYRAC	1 cut(s)	198
HindII	GTYRAC	1 cut(s)	198
HinfI	GANTC	1 cut(s)	25
HpaI	GTTAAC	1 cut(s)	198
HpaII	CCGG	1 cut(s)	188
HphI	GGTGA	3 cut(s)	156, 449, 593
Hpy166II	GTNNAC	2 cut(s)	198, 440
Hpy188I	TCNGA	2 cut(s)	24, 216
Hpy188III	TCNNGA	2 cut(s)	106, 324
Hpy8I	GTNNAC	2 cut(s)	198, 440
HpyAV	CCTTC	3 cut(s)	154, 241, 458
HpyCH4III	ACNGT	3 cut(s)	266, 310, 382
HpyCH4IV	ACGT	1 cut(s)	513
HpyCH4V	TGCA	4 cut(s)	101, 255, 289, 599
HpyF10VI	GCNNNNNNNGC	4 cut(s)	95, 98, 241, 653
HpySE526I	ACGT	1 cut(s)	513
Hsp92II	CATG	3 cut(s)	97, 293, 332
KspAI	GTTAAC	1 cut(s)	198
Kzo9I	GATC	2 cut(s)	360, 537
LguI	GCTCTTC	1 cut(s)	416
LmnI	GCTCC	2 cut(s)	241, 467
Lsp1109I	GCAGC	2 cut(s)	85, 101
LweI	GCATC	1 cut(s)	480
MaeII	ACGT	1 cut(s)	513
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	2 cut(s)	362, 539
MbiI	CCGCTC	1 cut(s)	244
MboI	GATC	2 cut(s)	360, 537
MboII	GAAGA	7 cut(s)	260, 418, 433, 443, 622, 635, 638
MflI	RGATCY	2 cut(s)	360, 537
MhlI	GDGCHC	2 cut(s)	11, 113
MluCI	AATT	3 cut(s)	65, 273, 400
MlyI	GAGTC	1 cut(s)	19
MmeI	TCCRAC	1 cut(s)	280
MnlI	CCTC	6 cut(s)	24, 130, 170, 179, 427, 578
Mph1103I	ATGCAT	1 cut(s)	291
MseI	TTAA	6 cut(s)	197, 294, 366, 390, 456, 573
MspI	CCGG	1 cut(s)	188
MspR9I	CCNGG	4 cut(s)	149, 189, 444, 542
Mva1269I	GAATGC	1 cut(s)	257
MvaI	CCWGG	3 cut(s)	149, 444, 542
MwoI	GCNNNNNNNGC	4 cut(s)	95, 98, 241, 653
NciI	CCSGG	1 cut(s)	189
NcoI	CCATGG	1 cut(s)	93
NdeI	CATATG	1 cut(s)	417
NdeII	GATC	2 cut(s)	360, 537
NlaIII	CATG	3 cut(s)	97, 293, 332
NmuCI	GTSAC	1 cut(s)	55
NsiI	ATGCAT	1 cut(s)	291
NspI	RCATGY	1 cut(s)	293
PciSI	GCTCTTC	1 cut(s)	416
PctI	GAATGC	1 cut(s)	257
PfoI	TCCNGGA	1 cut(s)	540
PkrI	GCNGC	2 cut(s)	91, 100
PleI	GAGTC	1 cut(s)	19
PpsI	GAGTC	1 cut(s)	19
Psp124BI	GAGCTC	1 cut(s)	113
Psp6I	CCWGG	3 cut(s)	147, 442, 540
PspGI	CCWGG	3 cut(s)	147, 442, 540
PspPI	GGNCC	1 cut(s)	151
PsuI	RGATCY	2 cut(s)	360, 537
RsaI	GTAC	1 cut(s)	379
RsaNI	GTAC	1 cut(s)	378
SacI	GAGCTC	1 cut(s)	113
SapI	GCTCTTC	1 cut(s)	416
SaqAI	TTAA	6 cut(s)	197, 294, 366, 390, 456, 573
SatI	GCNGC	2 cut(s)	90, 99
Sau3AI	GATC	2 cut(s)	360, 537
Sau96I	GGNCC	1 cut(s)	151
ScaI	AGTACT	1 cut(s)	379
SchI	GAGTC	1 cut(s)	19
ScrFI	CCNGG	4 cut(s)	149, 189, 444, 542
SduI	GDGCHC	2 cut(s)	11, 113
SfaNI	GCATC	1 cut(s)	480
Sse9I	AATT	3 cut(s)	65, 273, 400
SsiI	CCGC	1 cut(s)	244
SstI	GAGCTC	1 cut(s)	113
StyD4I	CCNGG	4 cut(s)	147, 187, 442, 540
StyI	CCWWGG	1 cut(s)	93
TaaI	ACNGT	3 cut(s)	266, 310, 382
TaiI	ACGT	1 cut(s)	516
TaqI	TCGA	2 cut(s)	113, 500
TasI	AATT	3 cut(s)	65, 273, 400
TatI	WGTACW	1 cut(s)	377
Tru1I	TTAA	6 cut(s)	197, 294, 366, 390, 456, 573
Tru9I	TTAA	6 cut(s)	197, 294, 366, 390, 456, 573
TscAI	CASTG	2 cut(s)	60, 315
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	2 cut(s)	89, 98
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	3 cut(s)	39, 345, 434
TspRI	CASTG	2 cut(s)	60, 315
XapI	RAATTY	2 cut(s)	65, 400
XceI	RCATGY	1 cut(s)	293
ZrmI	AGTACT	1 cut(s)	379
Zsp2I	ATGCAT	1 cut(s)	291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.