MD03G1255900.v1.1

Guanylate-binding protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
Physical Location & Seq
Reverse (-)
34327560 .. 34333205
5646 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1255900.v1.1.491

Sequence Viewer

Length: 1830 bp
ATGAAGGCCCCTGCTTCTTCCATGGCGATATCGAATTGGGTTTTTGTGTTTTCGATTGTTGTCTGCTTTTTCGCATCTGGGTCGCTCGCAATTGAGAATTTCCACCAAGCATTTCCTATTGTGGAACCTGATCCTGGTCATACAAAACTTCGTCTTTCAAGGGAAGGGTTGGAGGCCATTGAAAGAATAACAAATCCAATTGCAGCTGTTGCCGTTATTGGACCGTACCGCTCTGGAAAATCTTTTTTGCTCAACCAACTGCTCTCCCTTTCTTGTTATGAAGGGTTTGGTGTTGGACACATGCGTGACACAAAAACAAAAGGGATTTGGGTATGGGGAACACCAATAGAATTGGATATTGACGGAGTGAAAACTTCAGTTTTTTACCTTGATACTGAGGGATTTGAAAGTGTTGGGAAGTCAAATGTATATGATGACCGGATTTTTGCTCTGGCAACTGTTATGAGTTCTGTCCTTGTTTATAACCTGCCTGAGACGATCCGTGAAGCTGACATTGCCCGTTTATCATTTGCTGTTGAGCTTGCTGAAGAATTTTATGGAAGGTCCACAGGACAAGATGTTGCTTTTGAACCTGCAAAGCTATTGTGGCTCATCCAGCGTGATTTTTTACAAGGGAAATCTGTGCAAGAAATGGTTAATGAAGCTCTTCTTCGCGTCCCTAACAGTGATGGCAACAAAAACATTGATATGGTCAACCAGATCCGAGATTCTTTGGCTATTATGGGTGATAATAGCACCGCCTTCAGTTTACCACAACCTCACCTTGAGCGGACGAAACTCTGCGACATGAAGGATGGTGAGCTTGACCCGATGTATGTTAAGAAAAAGGAACAACTAAAACAGCTTGTTTCTAGTATCATCCGTCCAAAGATTGTGCAGGGAAAAACTCTAAATGGAAAAGAGTTTGTATCTTTTCTGGAGCAGATTCTTGAAGCGTTGAACAAGGGGGAGATCCCATCAACAGGTTCTCTGGTGGAGGTTTTCAATAAGGGTATTCTTGAGCGATGCTTAAAGCTGTACCATGAAAGGATGGAAAAACTCAGTTTACCTCTCGTAGAGCAATCTGTGCAAGAATACCATGAACGGTCCATGGAGGAAGTGATGAAACTTTTTGAGGATCAACATTTTGGCCGTCACCATGCAAAGAAGTCAGTTGAGCAACTACAAGAAGAAGTAGACAAGGTGTTTAAGAATGTGGTCATGGCAAACAAATATCAATCTTCAAAGCTCTGTGAGGCATTGTATACCAGATGTGAGGATAAAATGGACCAACTACAAGTTCTCAGACTTCCTTCCATGGCAAAATTCAACGCAGGTTTCCTGCAGTGCAACCAAAGTTTTGAGCAAGAGTGTGTTGGACCTGCAAAAGTAAACTATGAGGTTCGCATGATGAAGATGTTGGGCAAGTCACGATCTCTATTTATAAAAGAGTACAATCACCGACTCTTCAATTGGTTGGTCGCCTTCTCCCTTGTCATGGTGGTCGTTGGCCGGTTTATCATAAAGTTTATATTGATTGAAATCGGGGCCTGGATCATGTTCATCTTCTTAGAGACGTACACGAGGATGTTTTGGTCTGCAGAGTCTCTCTACTACAACCCCGTTTGGCATGTAATAGTAGCCACTTGGGAAACACTCGTATACAGTCCCGTCCTTGATCTGGACAGATGGGCTATTCCAGCCGGTGTCTTGGTAGCTCTGTTCATACTATATTGGCGGTGTTACGGAAGAAGGAAACACGGGTCCAGATGGATCTTACCCTTGTACAATAATCACAAAGGCGGCTCAAATCGCCCAAGATCAGACTGA

Protein Analysis

610

Amino Acids

69.76

Weight (kDa)

7.2

Isoelectric Point (pI)

41.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GBP PF02263 49 - 295 7.2e-36 Guanylate-binding protein, N-terminal domain
GBP_C PF02841 301 - 430 4e-08 Guanylate-binding protein, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 483, 1445
Acc36I ACCTGC 4 cut(s) 495, 601, 1325, 1390
AccBSI CCGCTC 2 cut(s) 231, 790
AccI GTMKAC 3 cut(s) 1197, 1265, 1662
AccII CGCG 1 cut(s) 675
AciI CCGC 5 cut(s) 229, 759, 790, 1738, 1803
AclWI GGATC 7 cut(s) 125, 493, 715, 967, 1146, 1562, 1781
AcoI YGGCCR 2 cut(s) 1150, 1510
AcsI RAATTY 3 cut(s) 97, 551, 1325
AcuI CTGAAG 3 cut(s) 360, 567, 748
AfaI GTAC 5 cut(s) 227, 1040, 1454, 1580, 1787
AfiI CCNNNNNNNGG 4 cut(s) 134, 983, 1498, 1681
AjnI CCWGG 2 cut(s) 133, 1550
AjuI GAANNNNNNNTTGG 2 cut(s) 1284, 1316
AleI CACNNNNGTG 1 cut(s) 303
Alw26I GTCTC 3 cut(s) 488, 1568, 1611
AlwI GGATC 7 cut(s) 125, 493, 715, 967, 1146, 1562, 1781
AoxI GGCC 5 cut(s) 6, 174, 1150, 1510, 1548
ApeKI GCWGC 1 cut(s) 203
ApoI RAATTY 3 cut(s) 97, 551, 1325
ArsI GACNNNNNNTTYG 2 cut(s) 428, 460
Asp700I GAANNNNTTC 1 cut(s) 666
AspS9I GGNCC 8 cut(s) 7, 221, 564, 1107, 1288, 1379, 1548, 1764
AsuHPI GGTGA 5 cut(s) 758, 773, 830, 1148, 1451
AvaII GGWCC 6 cut(s) 221, 564, 1107, 1288, 1379, 1764
BauI CACGAG 1 cut(s) 1582
BbvI GCAGC 1 cut(s) 215
BccI CCATC 6 cut(s) 683, 809, 985, 1045, 1683, 1764
BceAI ACGGC 2 cut(s) 197, 1137
BcgI CGANNNNNNTGC 2 cut(s) 63, 97
BciT130I CCWGG 2 cut(s) 135, 1552
BcoDI GTCTC 3 cut(s) 488, 1568, 1611
BfaI CTAG 1 cut(s) 873
BfmI CTRYAG 2 cut(s) 1343, 1599
BfuAI ACCTGC 4 cut(s) 495, 601, 1325, 1390
BisI GCNGC 2 cut(s) 204, 1804
BlsI GCNGC 2 cut(s) 205, 1805
Bme1390I CCNGG 2 cut(s) 135, 1552
Bme18I GGWCC 6 cut(s) 221, 564, 1107, 1288, 1379, 1764
BmgT120I GGNCC 8 cut(s) 7, 221, 564, 1107, 1288, 1379, 1548, 1764
BmiI GGNNCC 4 cut(s) 9, 126, 1549, 1765
BmrFI CCNGG 2 cut(s) 135, 1552
BmsI GCATC 2 cut(s) 83, 1016
BpmI CTGGAG 1 cut(s) 959
BpuEI CTTGAG 2 cut(s) 806, 1040
BsaBI GATNNNNATC 1 cut(s) 1541
BsaJI CCNNGG 3 cut(s) 21, 1110, 1317
BsaWI WCCGGW 1 cut(s) 438
Bsc4I CCNNNNNNNGG 4 cut(s) 134, 983, 1498, 1681
Bse118I RCCGGY 2 cut(s) 1512, 1703
Bse3DI GCAATG 1 cut(s) 513
Bse8I GATNNNNATC 1 cut(s) 1541
BseBI CCWGG 2 cut(s) 135, 1552
BseDI CCNNGG 3 cut(s) 21, 1110, 1317
BseGI GGATG 5 cut(s) 612, 820, 879, 1056, 1593
BseJI GATNNNNATC 1 cut(s) 1541
BseLI CCNNNNNNNGG 4 cut(s) 134, 983, 1498, 1681
BseMI GCAATG 1 cut(s) 513
BseMII CTCAG 4 cut(s) 387, 483, 1075, 1318
BseXI GCAGC 1 cut(s) 215
BsgI GTGCAG 1 cut(s) 917
Bsh1236I CGCG 1 cut(s) 675
BshFI GGCC 5 cut(s) 8, 176, 1152, 1512, 1550
BsiSI CCGG 3 cut(s) 439, 1513, 1704
BslFI GGGAC 2 cut(s) 662, 1653
BslI CCNNNNNNNGG 4 cut(s) 134, 983, 1498, 1681
BsmAI GTCTC 3 cut(s) 488, 1568, 1611
BsmBI CGTCTC 2 cut(s) 488, 1568
BsmFI GGGAC 2 cut(s) 662, 1653
BsnI GGCC 5 cut(s) 8, 176, 1152, 1512, 1550
Bsp1407I TGTACA 1 cut(s) 1785
Bsp19I CCATGG 3 cut(s) 21, 1110, 1317
BspACI CCGC 5 cut(s) 229, 759, 790, 1738, 1803
BspANI GGCC 5 cut(s) 8, 176, 1152, 1512, 1550
BspCNI CTCAG 4 cut(s) 388, 484, 1074, 1317
BspFNI CGCG 1 cut(s) 675
BspLI GGNNCC 4 cut(s) 9, 126, 1549, 1765
BspMAI CTGCAG 2 cut(s) 1347, 1603
BspMI ACCTGC 4 cut(s) 495, 601, 1325, 1390
BspPI GGATC 7 cut(s) 125, 493, 715, 967, 1146, 1562, 1781
BspQI GCTCTTC 1 cut(s) 672
BsrBI CCGCTC 2 cut(s) 231, 790
BsrDI GCAATG 1 cut(s) 513
BsrFI RCCGGY 2 cut(s) 1512, 1703
BsrGI TGTACA 1 cut(s) 1785
BssAI RCCGGY 2 cut(s) 1512, 1703
BssECI CCNNGG 3 cut(s) 21, 1110, 1317
BssNAI GTATAC 2 cut(s) 1266, 1663
BssSI CACGAG 1 cut(s) 1582
BssT1I CCWWGG 3 cut(s) 21, 1110, 1317
Bst1107I GTATAC 2 cut(s) 1266, 1663
Bst2BI CACGAG 1 cut(s) 1582
Bst2UI CCWGG 2 cut(s) 135, 1552
Bst4CI ACNGT 5 cut(s) 225, 460, 686, 1107, 1667
Bst6I CTCTTC 2 cut(s) 672, 1472
BstAPI GCANNNNNTGC 2 cut(s) 209, 1087
BstAUI TGTACA 1 cut(s) 1785
BstC8I GCNNGC 2 cut(s) 87, 543
BstDEI CTNAG 5 cut(s) 396, 492, 1061, 1304, 1570
BstDSI CCRYGG 3 cut(s) 21, 1110, 1317
BstF5I GGATG 5 cut(s) 612, 820, 879, 1056, 1593
BstFNI CGCG 1 cut(s) 675
BstMAI GTCTC 3 cut(s) 488, 1568, 1611
BstMWI GCNNNNNNNGC 7 cut(s) 209, 515, 607, 616, 1087, 1700, 1812
BstNI CCWGG 2 cut(s) 135, 1552
BstNSI RCATGY 2 cut(s) 304, 1634
BstSCI CCNGG 2 cut(s) 133, 1550
BstSFI CTRYAG 2 cut(s) 1343, 1599
BstUI CGCG 1 cut(s) 675
BstV1I GCAGC 1 cut(s) 215
BstX2I RGATCY 3 cut(s) 720, 972, 1773
BstYI RGATCY 3 cut(s) 720, 972, 1773
BstZ17I GTATAC 2 cut(s) 1266, 1663
BsuRI GGCC 5 cut(s) 8, 176, 1152, 1512, 1550
BtgI CCRYGG 3 cut(s) 21, 1110, 1317
BtgZI GCGATG 1 cut(s) 1039
BtsCI GGATG 5 cut(s) 612, 820, 879, 1056, 1593
BtsI GCAGTG 1 cut(s) 1352
BtsIMutI CAGTG 2 cut(s) 691, 1352
BveI ACCTGC 4 cut(s) 495, 601, 1325, 1390
Cac8I GCNNGC 2 cut(s) 87, 543
Cfr10I RCCGGY 2 cut(s) 1512, 1703
Cfr13I GGNCC 8 cut(s) 7, 221, 564, 1107, 1288, 1379, 1548, 1764
CseI GACGC 1 cut(s) 664
Csp6I GTAC 5 cut(s) 226, 1039, 1453, 1579, 1786
CviQI GTAC 5 cut(s) 226, 1039, 1453, 1579, 1786
DdeI CTNAG 5 cut(s) 396, 492, 1061, 1304, 1570
EaeI YGGCCR 2 cut(s) 1150, 1510
Eam1104I CTCTTC 2 cut(s) 672, 1472
EarI CTCTTC 2 cut(s) 672, 1472
Eco130I CCWWGG 3 cut(s) 21, 1110, 1317
Eco32I GATATC 1 cut(s) 30
Eco47I GGWCC 6 cut(s) 221, 564, 1107, 1288, 1379, 1764
Eco57I CTGAAG 3 cut(s) 360, 567, 748
EcoO109I RGGNCCY 2 cut(s) 7, 1548
EcoRII CCWGG 2 cut(s) 133, 1550
EcoRV GATATC 1 cut(s) 30
EcoT14I CCWWGG 3 cut(s) 21, 1110, 1317
ErhI CCWWGG 3 cut(s) 21, 1110, 1317
Esp3I CGTCTC 2 cut(s) 488, 1568
FalI AAGNNNNNCTT 2 cut(s) 654, 686
FaqI GGGAC 2 cut(s) 662, 1653
FblI GTMKAC 3 cut(s) 1197, 1265, 1662
Fnu4HI GCNGC 2 cut(s) 204, 1804
FokI GGATG 5 cut(s) 599, 827, 866, 1063, 1600
Fsp4HI GCNGC 2 cut(s) 204, 1804
FspBI CTAG 1 cut(s) 873
GluI GCNGC 2 cut(s) 204, 1804
GsuI CTGGAG 1 cut(s) 959
HaeIII GGCC 5 cut(s) 8, 176, 1152, 1512, 1550
HapII CCGG 3 cut(s) 439, 1513, 1704
HgaI GACGC 1 cut(s) 664
HincII GTYRAC 1 cut(s) 715
HindII GTYRAC 1 cut(s) 715
HinfI GANTC 4 cut(s) 728, 946, 1464, 1604
HpaII CCGG 3 cut(s) 439, 1513, 1704
HphI GGTGA 5 cut(s) 758, 773, 830, 1148, 1451
Hpy166II GTNNAC 9 cut(s) 567, 715, 770, 1067, 1198, 1266, 1393, 1581, 1663
Hpy188I TCNGA 3 cut(s) 725, 1307, 1825
Hpy188III TCNNGA 7 cut(s) 234, 938, 950, 1019, 1431, 1682, 1767
Hpy8I GTNNAC 9 cut(s) 567, 715, 770, 1067, 1198, 1266, 1393, 1581, 1663
HpyAV CCTTC 8 cut(s) 158, 275, 555, 772, 805, 1323, 1495, 1746
HpyCH4III ACNGT 5 cut(s) 225, 460, 686, 1107, 1667
HpyCH4IV ACGT 1 cut(s) 1577
HpyF10VI GCNNNNNNNGC 7 cut(s) 209, 515, 607, 616, 1087, 1700, 1812
HpyF3I CTNAG 5 cut(s) 396, 492, 1061, 1304, 1570
HpySE526I ACGT 1 cut(s) 1577
LguI GCTCTTC 1 cut(s) 672
LmnI GCTCC 1 cut(s) 940
Lsp1109I GCAGC 1 cut(s) 215
LweI GCATC 2 cut(s) 83, 1016
MaeI CTAG 1 cut(s) 873
MaeII ACGT 1 cut(s) 1577
MaeIII GTNAC 4 cut(s) 305, 1154, 1428, 1742
MbiI CCGCTC 2 cut(s) 231, 790
MfeI CAATTG 3 cut(s) 90, 198, 1471
MflI RGATCY 3 cut(s) 720, 972, 1773
MluCI AATT 8 cut(s) 34, 90, 97, 198, 350, 551, 1325, 1471
MlyI GAGTC 2 cut(s) 1458, 1613
MmeI TCCRAC 3 cut(s) 150, 274, 1357
MroXI GAANNNNTTC 1 cut(s) 666
MseI TTAA 4 cut(s) 657, 840, 1031, 1209
MslI CAYNNNNRTG 3 cut(s) 303, 707, 1586
MspA1I CMGCKG 1 cut(s) 206
MspI CCGG 3 cut(s) 439, 1513, 1704
MspR9I CCNGG 2 cut(s) 135, 1552
MunI CAATTG 3 cut(s) 90, 198, 1471
MvaI CCWGG 2 cut(s) 135, 1552
MvnI CGCG 1 cut(s) 675
MwoI GCNNNNNNNGC 7 cut(s) 209, 515, 607, 616, 1087, 1700, 1812
NcoI CCATGG 3 cut(s) 21, 1110, 1317
NlaIV GGNNCC 4 cut(s) 9, 126, 1549, 1765
NmuCI GTSAC 3 cut(s) 305, 1154, 1428
NspI RCATGY 2 cut(s) 304, 1634
OliI CACNNNNGTG 1 cut(s) 303
PciSI GCTCTTC 1 cut(s) 672
PdmI GAANNNNTTC 1 cut(s) 666
PfeI GAWTC 2 cut(s) 728, 946
PkrI GCNGC 2 cut(s) 205, 1805
PleI GAGTC 2 cut(s) 1458, 1612
PpsI GAGTC 2 cut(s) 1458, 1612
PsiI TTATAA 2 cut(s) 483, 1445
Psp6I CCWGG 2 cut(s) 133, 1550
PspGI CCWGG 2 cut(s) 133, 1550
PspN4I GGNNCC 4 cut(s) 9, 126, 1549, 1765
PspPI GGNCC 8 cut(s) 7, 221, 564, 1107, 1288, 1379, 1548, 1764
PstI CTGCAG 2 cut(s) 1347, 1603
PsuI RGATCY 3 cut(s) 720, 972, 1773
PvuII CAGCTG 1 cut(s) 206
RsaI GTAC 5 cut(s) 227, 1040, 1454, 1580, 1787
RsaNI GTAC 5 cut(s) 226, 1039, 1453, 1579, 1786
RseI CAYNNNNRTG 3 cut(s) 303, 707, 1586
SapI GCTCTTC 1 cut(s) 672
SaqAI TTAA 4 cut(s) 657, 840, 1031, 1209
SatI GCNGC 2 cut(s) 204, 1804
Sau96I GGNCC 8 cut(s) 7, 221, 564, 1107, 1288, 1379, 1548, 1764
SchI GAGTC 2 cut(s) 1458, 1613
ScrFI CCNGG 2 cut(s) 135, 1552
SfaNI GCATC 2 cut(s) 83, 1016
SfcI CTRYAG 2 cut(s) 1343, 1599
SinI GGWCC 6 cut(s) 221, 564, 1107, 1288, 1379, 1764
SmiMI CAYNNNNRTG 3 cut(s) 303, 707, 1586
SmlI CTYRAG 2 cut(s) 785, 1019
SmoI CTYRAG 2 cut(s) 785, 1019
Sse9I AATT 8 cut(s) 34, 90, 97, 198, 350, 551, 1325, 1471
SsiI CCGC 5 cut(s) 229, 759, 790, 1738, 1803
SspMI CTAG 1 cut(s) 873
StyD4I CCNGG 2 cut(s) 133, 1550
StyI CCWWGG 3 cut(s) 21, 1110, 1317
TaaI ACNGT 5 cut(s) 225, 460, 686, 1107, 1667
TaiI ACGT 1 cut(s) 1580
TaqI TCGA 2 cut(s) 32, 53
TasI AATT 8 cut(s) 34, 90, 97, 198, 350, 551, 1325, 1471
TatI WGTACW 2 cut(s) 1452, 1785
TauI GCSGC 1 cut(s) 1806
TfiI GAWTC 2 cut(s) 728, 946
Tru1I TTAA 4 cut(s) 657, 840, 1031, 1209
Tru9I TTAA 4 cut(s) 657, 840, 1031, 1209
TscAI CASTG 2 cut(s) 691, 1352
TseFI GTSAC 3 cut(s) 305, 1154, 1428
TseI GCWGC 1 cut(s) 203
Tsp45I GTSAC 3 cut(s) 305, 1154, 1428
TspGWI ACGGA 4 cut(s) 378, 491, 872, 1761
TspRI CASTG 2 cut(s) 691, 1352
VpaK11BI GGWCC 6 cut(s) 221, 564, 1107, 1288, 1379, 1764
XapI RAATTY 3 cut(s) 97, 551, 1325
XceI RCATGY 2 cut(s) 304, 1634
XmiI GTMKAC 3 cut(s) 1197, 1265, 1662
XmnI GAANNNNTTC 1 cut(s) 666
XspI CTAG 1 cut(s) 873
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.