Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0005639

Physical Location & Seq

Genomic Coordinates Reverse (-)

51754479 .. 51760298

Gene Structure 5820 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG315600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1530 bp

ATGCGTGACACAAAAACAAAAGGGATTTGGGTATGGGGAACCCCAATAGAAGTGGATATTGATGGAGTAACAACTTCTGTGTTTTACCTTGATACCGAAGGATTTGAAAGTGTTGGAAAGTCAAATGTATATGATGACCGGATTTTCGCTCTTGCAACTGTCATGAGTTCTGTGCTAGTATATAACCTGCCTGAGACGATACGTGAAGCTGACATTGCACGGTTGTCATTTGCTGTTGAGCTTGCCGAAGAATTTTATGGCAGAGTGAAGGGGCAAGATGTTGCTTTTGAACCTGCAAAGCTTTTGTGGCTCATCCAACGTGATTTTCTACAAGGAAAATCTGTGCAAGAAATGGTGCACGAAGCTCTCCTTCATGTTCCTAATAGCGATGGCAACAAAAATATTGATATGGTTAACCAGATCCGAGATTCTTTAGCTATTATGGGTGATAATAGCACAGCATTTAGCTTACCACAACCTCACCTTCAACGAACGAAACTCTGTGACATGAAGGATGGCGAGCTCGACCCGGCATATGTTACAAAAAGGGACCAACTAAAACAGCTTGTTTCTAGTATCATCCGTCCAAAGATTGTGCAAGGAAGACCTTTAAACGGCAAGGAATTTGTAGCCTTTTTGGAGCAGATCCTTGAAGCCCTGAACAAAGGGGAGATCCCATCAACAGGTTCTCTGGTGGAGGTTTTTAATAAAGGGATTCTTGAGCGATGCCTAAAGCTGTATAGTGAAAGGATGAAAAAAGTGCATTTACCTATCTTTGAGCAATCTCTTGTAGAATACCATGAGAGCTCTATGGCAGAAGCAATGAAGCTTTTTGAAGAGCAGCATTTTGGCCGTCACCATGCAAAGAAATCCGTAGTGCAACTAGAAGAAGAAATAGATAAGTTGTACAGGAATGTCTTAATGGCCAATGAATATCAATCTTCAAAGCTGTGTGAGGGATTGTATACCAGTTGTGAGGATAAAATGGATCATCTTCAGGTTCTCAGGCTTCCTTCAATGGCAAAATTCAATGCAGGTTTCCTACAATGCAACCAAAGTTTTGAGCACGAATGTGTTGGACCTGCAAAAACAAATTATGAGCGACGGATGATGAAGATGTTGGGAAAGTCACGCTCTCTTTTTATAAAAGAATATAATCACAGGCTCTTCAATTGGTTGGTGGCCTTCTCTCTTGTCATGGTCGTGGTGGGCAGGTTTATCATAAAGTTTATTTTGATTGAAATTGGGGCGTGGGTTCTCTTCATCTTCTTAGAGACGTACACGAGGATGTTTTGGTCAGCGGAGTCTCTTTATTACAACCCAGTTTGGCATGTAATAGTAGCCACTTGGGAAACACTTGTTTACAGCCCCATCCTTGATCTAGACAGATGGGCTATTCCAGTTGGTGTAATAGTAGCTGTATTTATATTGTATTGGCGGTGTTATGGGAAAAGAAAACAGGGGTCTGGATGGGTGCTACCCCTGTACAATAATCAGAAAGGTGGCTCGAATCGGCCAAGATCGGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009987 GO:0010033 GO:0034097 GO:0034341 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046983 GO:0048471 GO:0050896 GO:0051716 GO:0070887 GO:0071310 GO:0071345 GO:0071346

KEGG Pathways

Metabolic & Signaling

ko04621 map04621

Pfam Domains

Protein Families

GBP GBP_C

Protein Analysis

509

Amino Acids

58.65

Weight (kDa)

6.66

Isoelectric Point (pI)

41.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GBP	PF02263	4 - 195	2.3e-20	Guanylate-binding protein, N-terminal domain
GBP_C	PF02841	201 - 325	2.2e-09	Guanylate-binding protein, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005639)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38840 AT2G38840
fragaria_vesca	FvH4_2g22730 FvH4_2g22730 FvH4_2g22730 FvH4_2g22730 FvH4_2g22730
malus_domestica	MD03G1255900.v1.1 MD11G1276500.v1.1
prunus_persica	Prupe.8G233000_v2.0.a1 Prupe.8G233000_v2.0.a1 Prupe.8G233000_v2.0.a1 Prupe.8G233000_v2.0.a1
pyrus_communis	pycom03g20260 pycom11g24470
rosa_chinensis	RchiOBHm_Chr6g0289661
rosa_laevigata	RLG00000012280
rosa_multiflora	Rmu_sc0008255.1_g000010
rosa_roxburghii	Rroxscaffold_7G00177720
rosa_rugosa	Rorug02G0296500 Rorug06G0205600 Rorug07G0206300 Rorug07G0206400
rosa_samantha	Rh6AG317200 Rh6BG324300 Rh6CG330400 Rh6DG315600
rosa_wichuraiana	Rw6G027360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1145
Acc36I	ACCTGC	5 cut(s)	195, 301, 1025, 1090, 1203
AccI	GTMKAC	1 cut(s)	965
AciI	CCGC	2 cut(s)	1301, 1438
AclWI	GGATC	4 cut(s)	415, 640, 667, 996
AcoI	YGGCCR	3 cut(s)	850, 924, 1514
AcsI	RAATTY	3 cut(s)	251, 623, 1025
AcuI	CTGAAG	1 cut(s)	980
AfaI	GTAC	3 cut(s)	908, 1280, 1487
AfiI	CCNNNNNNNGG	2 cut(s)	614, 683
AjuI	GAANNNNNNNTTGG	2 cut(s)	309, 341
AleI	CACNNNNGTG	1 cut(s)	1071
Alw21I	GWGCWC	4 cut(s)	360, 525, 809, 1068
Alw26I	GTCTC	3 cut(s)	188, 1268, 1311
Alw44I	GTGCAC	1 cut(s)	356
AlwI	GGATC	4 cut(s)	415, 640, 667, 996
AoxI	GGCC	4 cut(s)	850, 924, 1182, 1514
ApaLI	GTGCAC	1 cut(s)	356
ApeKI	GCWGC	1 cut(s)	841
ApoI	RAATTY	3 cut(s)	251, 623, 1025
ArsI	GACNNNNNNTTYG	2 cut(s)	128, 160
AspS9I	GGNCC	2 cut(s)	550, 1079
AsuC2I	CCSGG	1 cut(s)	530
AsuHPI	GGTGA	3 cut(s)	458, 473, 848
AvaII	GGWCC	2 cut(s)	550, 1079
BaeGI	GKGCMC	1 cut(s)	360
BalI	TGGCCA	1 cut(s)	926
BanII	GRGCYC	2 cut(s)	525, 809
BauI	CACGAG	1 cut(s)	1282
BbsI	GAAGAC	1 cut(s)	610
Bbv12I	GWGCWC	4 cut(s)	360, 525, 809, 1068
BbvI	GCAGC	1 cut(s)	853
BccI	CCATC	7 cut(s)	56, 383, 509, 685, 1379, 1383, 1464
BceAI	ACGGC	2 cut(s)	631, 837
BcnI	CCSGG	1 cut(s)	530
BcoDI	GTCTC	3 cut(s)	188, 1268, 1311
BfaI	CTAG	4 cut(s)	176, 573, 884, 1382
BfuAI	ACCTGC	5 cut(s)	195, 301, 1025, 1090, 1203
BisI	GCNGC	1 cut(s)	842
BlsI	GCNGC	1 cut(s)	843
Bme1390I	CCNGG	1 cut(s)	530
Bme18I	GGWCC	2 cut(s)	550, 1079
BmgT120I	GGNCC	2 cut(s)	550, 1079
BmiI	GGNNCC	2 cut(s)	40, 551
BmrFI	CCNGG	1 cut(s)	530
BmrI	ACTGGG	1 cut(s)	1316
BmsI	GCATC	1 cut(s)	716
BmuI	ACTGGG	1 cut(s)	1316
BpiI	GAAGAC	1 cut(s)	610
BpuEI	CTTGAG	1 cut(s)	740
BpuMI	CCSGG	1 cut(s)	530
BsaAI	YACGTR	1 cut(s)	203
BsaWI	WCCGGW	1 cut(s)	138
Bsc4I	CCNNNNNNNGG	2 cut(s)	614, 683
Bse1I	ACTGG	3 cut(s)	969, 1322, 1400
Bse3DI	GCAATG	2 cut(s)	213, 828
BseGI	GGATG	8 cut(s)	312, 520, 579, 756, 1113, 1293, 1371, 1475
BseLI	CCNNNNNNNGG	2 cut(s)	614, 683
BseMI	GCAATG	2 cut(s)	213, 828
BseMII	CTCAG	2 cut(s)	183, 1018
BseNI	ACTGG	3 cut(s)	969, 1322, 1400
BseSI	GKGCMC	1 cut(s)	360
BseXI	GCAGC	1 cut(s)	853
BshFI	GGCC	4 cut(s)	852, 926, 1184, 1516
BsiHKAI	GWGCWC	4 cut(s)	360, 525, 809, 1068
BsiSI	CCGG	2 cut(s)	139, 530
BslFI	GGGAC	1 cut(s)	563
BslI	CCNNNNNNNGG	2 cut(s)	614, 683
BsmAI	GTCTC	3 cut(s)	188, 1268, 1311
BsmBI	CGTCTC	2 cut(s)	188, 1268
BsmFI	GGGAC	1 cut(s)	563
BsnI	GGCC	4 cut(s)	852, 926, 1184, 1516
Bsp1286I	GDGCHC	4 cut(s)	360, 525, 809, 1068
Bsp1407I	TGTACA	2 cut(s)	906, 1485
Bsp143I	GATC	6 cut(s)	420, 645, 672, 988, 1378, 1520
BspACI	CCGC	2 cut(s)	1301, 1438
BspANI	GGCC	4 cut(s)	852, 926, 1184, 1516
BspCNI	CTCAG	2 cut(s)	184, 1017
BspHI	TCATGA	1 cut(s)	162
BspLI	GGNNCC	2 cut(s)	40, 551
BspMI	ACCTGC	5 cut(s)	195, 301, 1025, 1090, 1203
BspPI	GGATC	4 cut(s)	415, 640, 667, 996
BspQI	GCTCTTC	2 cut(s)	831, 1172
BsrDI	GCAATG	2 cut(s)	213, 828
BsrGI	TGTACA	2 cut(s)	906, 1485
BsrI	ACTGG	3 cut(s)	969, 1322, 1400
BssMI	GATC	6 cut(s)	420, 645, 672, 988, 1378, 1520
BssNAI	GTATAC	1 cut(s)	966
BssSI	CACGAG	1 cut(s)	1282
Bst1107I	GTATAC	1 cut(s)	966
Bst2BI	CACGAG	1 cut(s)	1282
Bst4CI	ACNGT	2 cut(s)	160, 222
Bst6I	CTCTTC	3 cut(s)	831, 1172, 1265
BstAUI	TGTACA	2 cut(s)	906, 1485
BstBAI	YACGTR	1 cut(s)	203
BstC8I	GCNNGC	2 cut(s)	243, 521
BstDEI	CTNAG	3 cut(s)	192, 1004, 1270
BstF5I	GGATG	8 cut(s)	312, 520, 579, 756, 1113, 1293, 1371, 1475
BstKTI	GATC	6 cut(s)	423, 648, 675, 991, 1381, 1523
BstMAI	GTCTC	3 cut(s)	188, 1268, 1311
BstMBI	GATC	6 cut(s)	420, 645, 672, 988, 1378, 1520
BstMWI	GCNNNNNNNGC	2 cut(s)	215, 307
BstNSI	RCATGY	1 cut(s)	1334
BstSCI	CCNGG	1 cut(s)	528
BstSLI	GKGCMC	1 cut(s)	360
BstV1I	GCAGC	1 cut(s)	853
BstV2I	GAAGAC	1 cut(s)	610
BstX2I	RGATCY	3 cut(s)	420, 645, 672
BstYI	RGATCY	3 cut(s)	420, 645, 672
BstZ17I	GTATAC	1 cut(s)	966
BsuRI	GGCC	4 cut(s)	852, 926, 1184, 1516
BtgZI	GCGATG	2 cut(s)	402, 739
BtsCI	GGATG	8 cut(s)	312, 520, 579, 756, 1113, 1293, 1371, 1475
BveI	ACCTGC	5 cut(s)	195, 301, 1025, 1090, 1203
Cac8I	GCNNGC	2 cut(s)	243, 521
CciI	TCATGA	1 cut(s)	162
Cfr13I	GGNCC	2 cut(s)	550, 1079
Csp6I	GTAC	3 cut(s)	907, 1279, 1486
CspCI	CAANNNNNGTGG	2 cut(s)	33, 68
CviAII	CATG	7 cut(s)	163, 374, 508, 800, 860, 1198, 1331
CviQI	GTAC	3 cut(s)	907, 1279, 1486
DdeI	CTNAG	3 cut(s)	192, 1004, 1270
DpnI	GATC	6 cut(s)	422, 647, 674, 990, 1380, 1522
DpnII	GATC	6 cut(s)	420, 645, 672, 988, 1378, 1520
DraI	TTTAAA	1 cut(s)	612
EaeI	YGGCCR	3 cut(s)	850, 924, 1514
Eam1104I	CTCTTC	3 cut(s)	831, 1172, 1265
EarI	CTCTTC	3 cut(s)	831, 1172, 1265
Ecl136II	GAGCTC	2 cut(s)	523, 807
Eco24I	GRGCYC	2 cut(s)	525, 809
Eco47I	GGWCC	2 cut(s)	550, 1079
Eco53kI	GAGCTC	2 cut(s)	523, 807
Eco57I	CTGAAG	1 cut(s)	980
EcoICRI	GAGCTC	2 cut(s)	523, 807
EcoT38I	GRGCYC	2 cut(s)	525, 809
Esp3I	CGTCTC	2 cut(s)	188, 1268
FaeI	CATG	7 cut(s)	166, 377, 511, 803, 863, 1201, 1334
FalI	AAGNNNNNCTT	4 cut(s)	354, 386, 702, 734
FaqI	GGGAC	1 cut(s)	563
FatI	CATG	7 cut(s)	162, 373, 507, 799, 859, 1197, 1330
FauNDI	CATATG	1 cut(s)	535
FblI	GTMKAC	1 cut(s)	965
Fnu4HI	GCNGC	1 cut(s)	842
FokI	GGATG	8 cut(s)	299, 527, 566, 763, 1120, 1300, 1358, 1482
FriOI	GRGCYC	2 cut(s)	525, 809
Fsp4HI	GCNGC	1 cut(s)	842
FspBI	CTAG	4 cut(s)	176, 573, 884, 1382
GluI	GCNGC	1 cut(s)	842
HaeIII	GGCC	4 cut(s)	852, 926, 1184, 1516
HapII	CCGG	2 cut(s)	139, 530
Hin1II	CATG	7 cut(s)	166, 377, 511, 803, 863, 1201, 1334
HincII	GTYRAC	1 cut(s)	415
HindII	GTYRAC	1 cut(s)	415
HindIII	AAGCTT	2 cut(s)	299, 827
HinfI	GANTC	4 cut(s)	428, 715, 1304, 1510
HpaI	GTTAAC	1 cut(s)	415
HpaII	CCGG	2 cut(s)	139, 530
HphI	GGTGA	3 cut(s)	458, 473, 848
Hpy166II	GTNNAC	5 cut(s)	358, 415, 966, 1281, 1363
Hpy188I	TCNGA	3 cut(s)	425, 1497, 1525
Hpy188III	TCNNGA	4 cut(s)	163, 719, 1382, 1467
Hpy8I	GTNNAC	5 cut(s)	358, 415, 966, 1281, 1363
Hpy99I	CGWCG	1 cut(s)	1107
HpyAV	CCTTC	7 cut(s)	92, 262, 380, 494, 505, 1023, 1195
HpyCH4III	ACNGT	2 cut(s)	160, 222
HpyCH4IV	ACGT	3 cut(s)	202, 319, 1277
HpyF10VI	GCNNNNNNNGC	2 cut(s)	215, 307
HpyF3I	CTNAG	3 cut(s)	192, 1004, 1270
HpySE526I	ACGT	3 cut(s)	202, 319, 1277
Hsp92II	CATG	7 cut(s)	166, 377, 511, 803, 863, 1201, 1334
KspAI	GTTAAC	1 cut(s)	415
Kzo9I	GATC	6 cut(s)	420, 645, 672, 988, 1378, 1520
LguI	GCTCTTC	2 cut(s)	831, 1172
LmnI	GCTCC	1 cut(s)	640
Lsp1109I	GCAGC	1 cut(s)	853
LweI	GCATC	1 cut(s)	716
MaeI	CTAG	4 cut(s)	176, 573, 884, 1382
MaeII	ACGT	3 cut(s)	202, 319, 1277
MaeIII	GTNAC	6 cut(s)	5, 67, 503, 538, 854, 1128
MalI	GATC	6 cut(s)	422, 647, 674, 990, 1380, 1522
MboI	GATC	6 cut(s)	420, 645, 672, 988, 1378, 1520
MfeI	CAATTG	1 cut(s)	1171
MflI	RGATCY	3 cut(s)	420, 645, 672
MhlI	GDGCHC	4 cut(s)	360, 525, 809, 1068
MlsI	TGGCCA	1 cut(s)	926
MluCI	AATT	6 cut(s)	251, 623, 1025, 1093, 1171, 1242
MluNI	TGGCCA	1 cut(s)	926
MlyI	GAGTC	1 cut(s)	1313
MmeI	TCCRAC	3 cut(s)	94, 340, 1057
MnlI	CCTC	5 cut(s)	489, 691, 949, 970, 1278
Mox20I	TGGCCA	1 cut(s)	926
MscI	TGGCCA	1 cut(s)	926
MseI	TTAA	4 cut(s)	414, 611, 705, 920
MslI	CAYNNNNRTG	3 cut(s)	1071, 1202, 1286
Msp20I	TGGCCA	1 cut(s)	926
MspA1I	CMGCKG	1 cut(s)	1301
MspI	CCGG	2 cut(s)	139, 530
MspR9I	CCNGG	1 cut(s)	530
MunI	CAATTG	1 cut(s)	1171
MwoI	GCNNNNNNNGC	2 cut(s)	215, 307
NciI	CCSGG	1 cut(s)	530
NdeI	CATATG	1 cut(s)	535
NdeII	GATC	6 cut(s)	420, 645, 672, 988, 1378, 1520
NlaIII	CATG	7 cut(s)	166, 377, 511, 803, 863, 1201, 1334
NlaIV	GGNNCC	2 cut(s)	40, 551
NmuCI	GTSAC	4 cut(s)	5, 503, 854, 1128
NspI	RCATGY	1 cut(s)	1334
OliI	CACNNNNGTG	1 cut(s)	1071
PagI	TCATGA	1 cut(s)	162
PciSI	GCTCTTC	2 cut(s)	831, 1172
PfeI	GAWTC	3 cut(s)	428, 715, 1510
PkrI	GCNGC	1 cut(s)	843
PleI	GAGTC	1 cut(s)	1312
PpsI	GAGTC	1 cut(s)	1312
Ppu21I	YACGTR	1 cut(s)	203
PsiI	TTATAA	1 cut(s)	1145
Psp124BI	GAGCTC	2 cut(s)	525, 809
PspN4I	GGNNCC	2 cut(s)	40, 551
PspPI	GGNCC	2 cut(s)	550, 1079
PsuI	RGATCY	3 cut(s)	420, 645, 672
RsaI	GTAC	3 cut(s)	908, 1280, 1487
RsaNI	GTAC	3 cut(s)	907, 1279, 1486
RseI	CAYNNNNRTG	3 cut(s)	1071, 1202, 1286
SacI	GAGCTC	2 cut(s)	525, 809
SapI	GCTCTTC	2 cut(s)	831, 1172
SaqAI	TTAA	4 cut(s)	414, 611, 705, 920
SatI	GCNGC	1 cut(s)	842
Sau3AI	GATC	6 cut(s)	420, 645, 672, 988, 1378, 1520
Sau96I	GGNCC	2 cut(s)	550, 1079
SchI	GAGTC	1 cut(s)	1313
ScrFI	CCNGG	1 cut(s)	530
SduI	GDGCHC	4 cut(s)	360, 525, 809, 1068
SfaNI	GCATC	1 cut(s)	716
SinI	GGWCC	2 cut(s)	550, 1079
SmiMI	CAYNNNNRTG	3 cut(s)	1071, 1202, 1286
SmlI	CTYRAG	1 cut(s)	719
SmoI	CTYRAG	1 cut(s)	719
Sse9I	AATT	6 cut(s)	251, 623, 1025, 1093, 1171, 1242
SsiI	CCGC	2 cut(s)	1301, 1438
SspI	AATATT	1 cut(s)	403
SspMI	CTAG	4 cut(s)	176, 573, 884, 1382
SstI	GAGCTC	2 cut(s)	525, 809
StyD4I	CCNGG	1 cut(s)	528
TaaI	ACNGT	2 cut(s)	160, 222
TaiI	ACGT	3 cut(s)	205, 322, 1280
TaqI	TCGA	2 cut(s)	525, 1508
TasI	AATT	6 cut(s)	251, 623, 1025, 1093, 1171, 1242
TatI	WGTACW	2 cut(s)	906, 1485
TfiI	GAWTC	3 cut(s)	428, 715, 1510
Tru1I	TTAA	4 cut(s)	414, 611, 705, 920
Tru9I	TTAA	4 cut(s)	414, 611, 705, 920
TseFI	GTSAC	4 cut(s)	5, 503, 854, 1128
TseI	GCWGC	1 cut(s)	841
Tsp45I	GTSAC	4 cut(s)	5, 503, 854, 1128
TspDTI	ATGAA	7 cut(s)	362, 524, 767, 839, 945, 1127, 1252
TspGWI	ACGGA	3 cut(s)	572, 862, 1120
VneI	GTGCAC	1 cut(s)	356
VpaK11BI	GGWCC	2 cut(s)	550, 1079
XapI	RAATTY	3 cut(s)	251, 623, 1025
XbaI	TCTAGA	1 cut(s)	1381
XceI	RCATGY	1 cut(s)	1334
XmiI	GTMKAC	1 cut(s)	965
XspI	CTAG	4 cut(s)	176, 573, 884, 1382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.