Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008255.1

Orthogroup ID

OG0005639

Physical Location & Seq

Genomic Coordinates Forward (+)

21111 .. 23637

Gene Structure 2527 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008255.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

atgatgaagactgcttattgggttttggctgtttccataatcttcagcttttgcgcatctgggacttcctccattgagaattatcaccaagcgtttcctattgtcgaaccagatcctggtcatacaaaacttcgtctttcaaaggaaggcctagaggccattgaaagaataacaactccgattgcagctgttgcagttattgggccataccgctctgggaaatctttcttgctcaatcagctgctctccctttcttgttatgaaggttttggtgtagggcacatgcgtgacacaaaaacaaaagggatttgggtatggggaaccccaatagaagtggatattgatggagtaacaacttctgtgttttaccttgataccgaaggatttgaaagtgttggaaagtcaaatgtatatgatgaccggattttcgctcttgcaactgtcatgagttctgtgctagtatataacctgcctgagacgatacgtgaagctgacattgcacggttgtcatttgctgttgagcttgccgaagaattttatggcaggtctacactctcttctctatttctttacctgagtttatgtagtttattgtgctattaccaacactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009987 GO:0010033 GO:0034097 GO:0034341 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046983 GO:0048471 GO:0050896 GO:0051716 GO:0070887 GO:0071310 GO:0071345 GO:0071346

KEGG Pathways

Metabolic & Signaling

ko04621 map04621

Pfam Domains

Protein Families

GBP GBP_C

Protein Analysis

203

Amino Acids

22.57

Weight (kDa)

5.07

Isoelectric Point (pI)

27.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005639)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38840 AT2G38840
fragaria_vesca	FvH4_2g22730 FvH4_2g22730 FvH4_2g22730 FvH4_2g22730 FvH4_2g22730
malus_domestica	MD03G1255900.v1.1 MD11G1276500.v1.1
prunus_persica	Prupe.8G233000_v2.0.a1 Prupe.8G233000_v2.0.a1 Prupe.8G233000_v2.0.a1 Prupe.8G233000_v2.0.a1
pyrus_communis	pycom03g20260 pycom11g24470
rosa_chinensis	RchiOBHm_Chr6g0289661
rosa_laevigata	RLG00000012280
rosa_multiflora	Rmu_sc0008255.1_g000010
rosa_roxburghii	Rroxscaffold_7G00177720
rosa_rugosa	Rorug02G0296500 Rorug06G0205600 Rorug07G0206300 Rorug07G0206400
rosa_samantha	Rh6AG317200 Rh6BG324300 Rh6CG330400 Rh6DG315600
rosa_wichuraiana	Rw6G027360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	55
Acc36I	ACCTGC	2 cut(s)	477, 534
AccB7I	CCANNNNNTGG	1 cut(s)	116
AccBSI	CCGCTC	1 cut(s)	213
AccI	GTMKAC	1 cut(s)	548
AciI	CCGC	1 cut(s)	211
AclWI	GGATC	1 cut(s)	107
AcsI	RAATTY	1 cut(s)	533
AcuI	CTGAAG	1 cut(s)	28
AfiI	CCNNNNNNNGG	1 cut(s)	116
AgsI	TTSAA	3 cut(s)	141, 164, 389
AjnI	CCWGG	1 cut(s)	115
AleI	CACNNNNGTG	1 cut(s)	285
AluBI	AGCT	5 cut(s)	48, 188, 241, 491, 523
AluI	AGCT	5 cut(s)	48, 188, 241, 491, 523
Alw26I	GTCTC	1 cut(s)	470
AlwI	GGATC	1 cut(s)	107
AlwNI	CAGNNNCTG	1 cut(s)	116
AoxI	GGCC	3 cut(s)	148, 156, 203
ApeKI	GCWGC	2 cut(s)	185, 241
ApoI	RAATTY	1 cut(s)	533
ArsI	GACNNNNNNTTYG	2 cut(s)	410, 442
Asp700I	GAANNNNTTC	1 cut(s)	224
AspLEI	GCGC	1 cut(s)	56
AspS9I	GGNCC	1 cut(s)	203
AsuHPI	GGTGA	1 cut(s)	77
BaeGI	GKGCMC	1 cut(s)	282
BbsI	GAAGAC	1 cut(s)	14
BbvI	GCAGC	2 cut(s)	197, 228
BccI	CCATC	1 cut(s)	338
BciT130I	CCWGG	1 cut(s)	117
BcoDI	GTCTC	1 cut(s)	470
BfaI	CTAG	2 cut(s)	152, 458
BfuAI	ACCTGC	2 cut(s)	477, 534
BisI	GCNGC	2 cut(s)	186, 242
BlsI	GCNGC	2 cut(s)	187, 243
Bme1390I	CCNGG	1 cut(s)	117
BmgT120I	GGNCC	1 cut(s)	203
BmiI	GGNNCC	1 cut(s)	322
BmrFI	CCNGG	1 cut(s)	117
BmsI	GCATC	1 cut(s)	65
BpiI	GAAGAC	1 cut(s)	14
BsaAI	YACGTR	1 cut(s)	485
BsaWI	WCCGGW	1 cut(s)	420
Bsc4I	CCNNNNNNNGG	1 cut(s)	116
Bse3DI	GCAATG	1 cut(s)	495
BseBI	CCWGG	1 cut(s)	117
BseLI	CCNNNNNNNGG	1 cut(s)	116
BseMI	GCAATG	1 cut(s)	495
BseMII	CTCAG	2 cut(s)	465, 566
BseSI	GKGCMC	1 cut(s)	282
BseXI	GCAGC	2 cut(s)	197, 228
BshFI	GGCC	3 cut(s)	150, 158, 205
BsiSI	CCGG	1 cut(s)	421
BslFI	GGGAC	1 cut(s)	76
BslI	CCNNNNNNNGG	1 cut(s)	116
BsmAI	GTCTC	1 cut(s)	470
BsmBI	CGTCTC	1 cut(s)	470
BsmFI	GGGAC	1 cut(s)	76
BsnI	GGCC	3 cut(s)	150, 158, 205
Bsp1286I	GDGCHC	1 cut(s)	282
Bsp143I	GATC	1 cut(s)	112
BspACI	CCGC	1 cut(s)	211
BspANI	GGCC	3 cut(s)	150, 158, 205
BspCNI	CTCAG	2 cut(s)	466, 567
BspHI	TCATGA	1 cut(s)	444
BspLI	GGNNCC	1 cut(s)	322
BspMI	ACCTGC	2 cut(s)	477, 534
BspPI	GGATC	1 cut(s)	107
BsrBI	CCGCTC	1 cut(s)	213
BsrDI	GCAATG	1 cut(s)	495
BssMI	GATC	1 cut(s)	112
Bst2UI	CCWGG	1 cut(s)	117
Bst4CI	ACNGT	2 cut(s)	442, 504
Bst6I	CTCTTC	1 cut(s)	562
BstAPI	GCANNNNNTGC	1 cut(s)	191
BstBAI	YACGTR	1 cut(s)	485
BstC8I	GCNNGC	1 cut(s)	525
BstDEI	CTNAG	2 cut(s)	474, 575
BstHHI	GCGC	1 cut(s)	56
BstKTI	GATC	1 cut(s)	115
BstMAI	GTCTC	1 cut(s)	470
BstMBI	GATC	1 cut(s)	112
BstMWI	GCNNNNNNNGC	3 cut(s)	191, 238, 497
BstNI	CCWGG	1 cut(s)	117
BstNSI	RCATGY	1 cut(s)	286
BstSCI	CCNGG	1 cut(s)	115
BstSLI	GKGCMC	1 cut(s)	282
BstV1I	GCAGC	2 cut(s)	197, 228
BstV2I	GAAGAC	1 cut(s)	14
BstX2I	RGATCY	1 cut(s)	112
BstYI	RGATCY	1 cut(s)	112
BsuRI	GGCC	3 cut(s)	150, 158, 205
BtsIMutI	CAGTG	1 cut(s)	607
BveI	ACCTGC	2 cut(s)	477, 534
Cac8I	GCNNGC	1 cut(s)	525
CaiI	CAGNNNCTG	1 cut(s)	116
CciI	TCATGA	1 cut(s)	444
CfoI	GCGC	1 cut(s)	56
Cfr13I	GGNCC	1 cut(s)	203
CspCI	CAANNNNNGTGG	2 cut(s)	315, 350
CviAII	CATG	2 cut(s)	283, 445
CviJI	RGCY	9 cut(s)	29, 48, 150, 158, 188, 205, 241, 491, 523
CviKI_1	RGCY	9 cut(s)	29, 48, 150, 158, 188, 205, 241, 491, 523
DdeI	CTNAG	2 cut(s)	474, 575
DpnI	GATC	1 cut(s)	114
DpnII	GATC	1 cut(s)	112
Eam1104I	CTCTTC	1 cut(s)	562
EarI	CTCTTC	1 cut(s)	562
Eco147I	AGGCCT	1 cut(s)	150
Eco57I	CTGAAG	1 cut(s)	28
EcoRII	CCWGG	1 cut(s)	115
Esp3I	CGTCTC	1 cut(s)	470
FaeI	CATG	2 cut(s)	286, 448
FaqI	GGGAC	1 cut(s)	76
FatI	CATG	2 cut(s)	282, 444
FblI	GTMKAC	1 cut(s)	548
Fnu4HI	GCNGC	2 cut(s)	186, 242
Fsp4HI	GCNGC	2 cut(s)	186, 242
FspBI	CTAG	2 cut(s)	152, 458
FspI	TGCGCA	1 cut(s)	55
GlaI	GCGC	1 cut(s)	55
GluI	GCNGC	2 cut(s)	186, 242
HaeIII	GGCC	3 cut(s)	150, 158, 205
HapII	CCGG	1 cut(s)	421
HhaI	GCGC	1 cut(s)	56
Hin1II	CATG	2 cut(s)	286, 448
Hin6I	GCGC	1 cut(s)	54
HinP1I	GCGC	1 cut(s)	54
HpaII	CCGG	1 cut(s)	421
HphI	GGTGA	1 cut(s)	77
Hpy166II	GTNNAC	1 cut(s)	549
Hpy188I	TCNGA	1 cut(s)	180
Hpy188III	TCNNGA	1 cut(s)	445
Hpy8I	GTNNAC	1 cut(s)	549
HpyAV	CCTTC	3 cut(s)	140, 257, 374
HpyCH4III	ACNGT	2 cut(s)	442, 504
HpyCH4IV	ACGT	1 cut(s)	484
HpyCH4V	TGCA	4 cut(s)	185, 194, 437, 500
HpyF10VI	GCNNNNNNNGC	3 cut(s)	191, 238, 497
HpyF3I	CTNAG	2 cut(s)	474, 575
HpySE526I	ACGT	1 cut(s)	484
Hsp92II	CATG	2 cut(s)	286, 448
HspAI	GCGC	1 cut(s)	54
Kzo9I	GATC	1 cut(s)	112
Lsp1109I	GCAGC	2 cut(s)	197, 228
LweI	GCATC	1 cut(s)	65
MaeI	CTAG	2 cut(s)	152, 458
MaeII	ACGT	1 cut(s)	484
MaeIII	GTNAC	2 cut(s)	287, 349
MalI	GATC	1 cut(s)	114
MbiI	CCGCTC	1 cut(s)	213
MboI	GATC	1 cut(s)	112
MboII	GAAGA	4 cut(s)	19, 34, 542, 549
MflI	RGATCY	1 cut(s)	112
MhlI	GDGCHC	1 cut(s)	282
MluCI	AATT	2 cut(s)	79, 533
MmeI	TCCRAC	1 cut(s)	376
MnlI	CCTC	2 cut(s)	79, 148
MroXI	GAANNNNTTC	1 cut(s)	224
MslI	CAYNNNNRTG	1 cut(s)	285
MspA1I	CMGCKG	2 cut(s)	188, 241
MspI	CCGG	1 cut(s)	421
MspR9I	CCNGG	1 cut(s)	117
MvaI	CCWGG	1 cut(s)	117
MwoI	GCNNNNNNNGC	3 cut(s)	191, 238, 497
NdeII	GATC	1 cut(s)	112
NlaIII	CATG	2 cut(s)	286, 448
NlaIV	GGNNCC	1 cut(s)	322
NmuCI	GTSAC	1 cut(s)	287
NsbI	TGCGCA	1 cut(s)	55
NspI	RCATGY	1 cut(s)	286
OliI	CACNNNNGTG	1 cut(s)	285
PagI	TCATGA	1 cut(s)	444
PceI	AGGCCT	1 cut(s)	150
PdmI	GAANNNNTTC	1 cut(s)	224
PflMI	CCANNNNNTGG	1 cut(s)	116
PkrI	GCNGC	2 cut(s)	187, 243
Ppu21I	YACGTR	1 cut(s)	485
Psp6I	CCWGG	1 cut(s)	115
PspGI	CCWGG	1 cut(s)	115
PspN4I	GGNNCC	1 cut(s)	322
PspPI	GGNCC	1 cut(s)	203
PstNI	CAGNNNCTG	1 cut(s)	116
PsuI	RGATCY	1 cut(s)	112
PvuII	CAGCTG	2 cut(s)	188, 241
RseI	CAYNNNNRTG	1 cut(s)	285
SatI	GCNGC	2 cut(s)	186, 242
Sau3AI	GATC	1 cut(s)	112
Sau96I	GGNCC	1 cut(s)	203
ScrFI	CCNGG	1 cut(s)	117
SduI	GDGCHC	1 cut(s)	282
SfaNI	GCATC	1 cut(s)	65
SmiMI	CAYNNNNRTG	1 cut(s)	285
Sse9I	AATT	2 cut(s)	79, 533
SseBI	AGGCCT	1 cut(s)	150
SsiI	CCGC	1 cut(s)	211
SspMI	CTAG	2 cut(s)	152, 458
StuI	AGGCCT	1 cut(s)	150
StyD4I	CCNGG	1 cut(s)	115
TaaI	ACNGT	2 cut(s)	442, 504
TaiI	ACGT	1 cut(s)	487
TaqI	TCGA	1 cut(s)	105
TasI	AATT	2 cut(s)	79, 533
TseFI	GTSAC	1 cut(s)	287
TseI	GCWGC	2 cut(s)	185, 241
Tsp45I	GTSAC	1 cut(s)	287
TspDTI	ATGAA	2 cut(s)	20, 276
Van91I	CCANNNNNTGG	1 cut(s)	116
XapI	RAATTY	1 cut(s)	533
XceI	RCATGY	1 cut(s)	286
XmiI	GTMKAC	1 cut(s)	548
XmnI	GAANNNNTTC	1 cut(s)	224
XspI	CTAG	2 cut(s)	152, 458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.