Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0005639

Physical Location & Seq

Genomic Coordinates Reverse (-)

51595633 .. 51598908

Gene Structure 3276 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG317200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1278 bp

ATGGAGAATAGAGTGAAGGGGCAAGATGTTGCTTTTGAACCTGCAAAGCTTTTGTGGCTCATCCAACGTGATTTTCTACAAGGAAAATCTGTGCAAGAAATGGTGCACGAAGCTCTCCTTCATGTTCCTAATAGCGATGGCAACAAAAATATTGATATGGTTAACCAGATCCGGGATTCTTTAGCTATTATGGGTGATAATAGCACAGCATTTAGCTTACCACAACCTCACCTTCAACGAACGAAACTCTGTGACATGAAGGATGGCGAGCTCGACCCGGCATATGTTACAAAAAGGGACCAACTAAAACAGCTTGTTACCAGTATCATCCGTCCAAAGATAGTGCAGGGAAGACCTTTAAATGGCAAGGAATTTGTAGCCTTTTTGGAGCAGATCCTTGAAGCCCTGAACAAAGGCGAGATCCCATCAACAGGTTCTCTGGTGGAGGTTTTTAATAAAGGGATTCTTGAGCGATGCCTAAAGCTGTATAGTGAAAGGATGAAAAAAGTGCATTTACCTATCTTTGAGCAATCTCTTGTAGAATACCATGAGAGCTCTATGGCAGAAGCAATGAAGCTTTTTGAAGAGCAGCATTTCGGCCGTCACCATGCAAAGAAATCAGTAGTGCAACTAGAAGAAGAAATAGATAAGTTGTACAGGAATGTCTTAATGGCCAATGAATATCAATCTTCAAAGCTGTGTGAGGGATTGTATACCAGTTGTGAGGATAAAATGGATCATCTTCAGGTTCTCAGGCTTCCTTCAATGGCAAAATTCAATGCAGGTTTCCTACAATGCAACCAAAGTTTTGAGCAAGAATGTGTTGGACCTGCAAAAACAAATTATGAGCGACGGATGATGAAGATGTTGGGAAAGTCACGCTCTCTTTTTATAAAAGAATATAATCACAGGCTCTTCAATTGGTTGGTGGCCTTCTCTCTTGTCATGGTCGTGGTGGGCAGGTTTATCATAAAGTTTATTTTGATTGAAATTGGGGCGTGGGTTCTCTTCATCTTCTTAGAGACGTACACGAGGATGTTTTGGTCAGCGGAGTCTCTTTATTACAACCCAGTTTGGCATGTAATAGTTGCCACTTGGGAAACACTTGTTTACAGCCCCATCCTTGATCTAGACAGATGGGCTATTCCAGTTGGTGTAATAGTAGCTGTATTTATATTGTATTGGCGGTGTTATGGGAAAAGAAAACAGGGGTCTGGATGGGTGCTACCCCTGTACAATAATCAGAAAGGTGGCTCAAATCGGCCAAGATCGGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009987 GO:0010033 GO:0034097 GO:0034341 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046983 GO:0048471 GO:0050896 GO:0051716 GO:0070887 GO:0071310 GO:0071345 GO:0071346

KEGG Pathways

Metabolic & Signaling

ko04621 map04621

Pfam Domains

Protein Families

GBP GBP_C

Protein Analysis

425

Amino Acids

49.28

Weight (kDa)

8.64

Isoelectric Point (pI)

45.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GBP_C	PF02841	117 - 241	1.6e-09	Guanylate-binding protein, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005639)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38840 AT2G38840
fragaria_vesca	FvH4_2g22730 FvH4_2g22730 FvH4_2g22730 FvH4_2g22730 FvH4_2g22730
malus_domestica	MD03G1255900.v1.1 MD11G1276500.v1.1
prunus_persica	Prupe.8G233000_v2.0.a1 Prupe.8G233000_v2.0.a1 Prupe.8G233000_v2.0.a1 Prupe.8G233000_v2.0.a1
pyrus_communis	pycom03g20260 pycom11g24470
rosa_chinensis	RchiOBHm_Chr6g0289661
rosa_laevigata	RLG00000012280
rosa_multiflora	Rmu_sc0008255.1_g000010
rosa_roxburghii	Rroxscaffold_7G00177720
rosa_rugosa	Rorug02G0296500 Rorug06G0205600 Rorug07G0206300 Rorug07G0206400
rosa_samantha	Rh6AG317200 Rh6BG324300 Rh6CG330400 Rh6DG315600
rosa_wichuraiana	Rw6G027360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	893
Acc36I	ACCTGC	4 cut(s)	49, 773, 838, 951
AccI	GTMKAC	1 cut(s)	713
AciI	CCGC	2 cut(s)	1049, 1186
AclWI	GGATC	4 cut(s)	163, 388, 415, 744
AcoI	YGGCCR	3 cut(s)	598, 672, 1262
AcsI	RAATTY	2 cut(s)	371, 773
AcuI	CTGAAG	1 cut(s)	728
AfaI	GTAC	3 cut(s)	656, 1028, 1235
AfiI	CCNNNNNNNGG	3 cut(s)	172, 362, 431
AgsI	TTSAA	9 cut(s)	38, 236, 401, 584, 693, 765, 778, 919, 989
AjuI	GAANNNNNNNTTGG	2 cut(s)	57, 89
Alw21I	GWGCWC	3 cut(s)	108, 273, 557
Alw26I	GTCTC	2 cut(s)	1016, 1059
Alw44I	GTGCAC	1 cut(s)	104
AlwI	GGATC	4 cut(s)	163, 388, 415, 744
AoxI	GGCC	4 cut(s)	598, 672, 930, 1262
ApaLI	GTGCAC	1 cut(s)	104
ApeKI	GCWGC	1 cut(s)	589
ApoI	RAATTY	2 cut(s)	371, 773
AspS9I	GGNCC	2 cut(s)	298, 827
AsuC2I	CCSGG	2 cut(s)	173, 278
AsuHPI	GGTGA	3 cut(s)	206, 221, 596
AvaII	GGWCC	2 cut(s)	298, 827
BaeGI	GKGCMC	1 cut(s)	108
BalI	TGGCCA	1 cut(s)	674
BanII	GRGCYC	2 cut(s)	273, 557
BauI	CACGAG	1 cut(s)	1030
BbsI	GAAGAC	1 cut(s)	358
Bbv12I	GWGCWC	3 cut(s)	108, 273, 557
BbvI	GCAGC	1 cut(s)	601
BccI	CCATC	6 cut(s)	131, 257, 433, 1127, 1131, 1212
BceAI	ACGGC	1 cut(s)	585
BcnI	CCSGG	2 cut(s)	173, 278
BcoDI	GTCTC	2 cut(s)	1016, 1059
BfaI	CTAG	2 cut(s)	632, 1130
BfuAI	ACCTGC	4 cut(s)	49, 773, 838, 951
BisI	GCNGC	1 cut(s)	590
BlsI	GCNGC	1 cut(s)	591
Bme1390I	CCNGG	2 cut(s)	173, 278
Bme18I	GGWCC	2 cut(s)	298, 827
BmgT120I	GGNCC	2 cut(s)	298, 827
BmiI	GGNNCC	1 cut(s)	299
BmrFI	CCNGG	2 cut(s)	173, 278
BmrI	ACTGGG	1 cut(s)	1064
BmsI	GCATC	1 cut(s)	464
BmuI	ACTGGG	1 cut(s)	1064
BpiI	GAAGAC	1 cut(s)	358
BpuEI	CTTGAG	1 cut(s)	488
BpuMI	CCSGG	2 cut(s)	173, 278
Bsc4I	CCNNNNNNNGG	3 cut(s)	172, 362, 431
Bse1I	ACTGG	4 cut(s)	321, 717, 1070, 1148
Bse3DI	GCAATG	1 cut(s)	576
BseGI	GGATG	8 cut(s)	60, 268, 327, 504, 861, 1041, 1119, 1223
BseLI	CCNNNNNNNGG	3 cut(s)	172, 362, 431
BseMI	GCAATG	1 cut(s)	576
BseMII	CTCAG	1 cut(s)	766
BseNI	ACTGG	4 cut(s)	321, 717, 1070, 1148
BseSI	GKGCMC	1 cut(s)	108
BseX3I	CGGCCG	1 cut(s)	598
BseXI	GCAGC	1 cut(s)	601
BsgI	GTGCAG	1 cut(s)	365
Bsh1285I	CGRYCG	1 cut(s)	601
BshFI	GGCC	4 cut(s)	600, 674, 932, 1264
BsiEI	CGRYCG	1 cut(s)	601
BsiHKAI	GWGCWC	3 cut(s)	108, 273, 557
BsiSI	CCGG	2 cut(s)	172, 278
BslFI	GGGAC	1 cut(s)	311
BslI	CCNNNNNNNGG	3 cut(s)	172, 362, 431
BsmAI	GTCTC	2 cut(s)	1016, 1059
BsmBI	CGTCTC	1 cut(s)	1016
BsmFI	GGGAC	1 cut(s)	311
BsnI	GGCC	4 cut(s)	600, 674, 932, 1264
Bsp1286I	GDGCHC	3 cut(s)	108, 273, 557
Bsp1407I	TGTACA	2 cut(s)	654, 1233
Bsp143I	GATC	6 cut(s)	168, 393, 420, 736, 1126, 1268
BspACI	CCGC	2 cut(s)	1049, 1186
BspANI	GGCC	4 cut(s)	600, 674, 932, 1264
BspCNI	CTCAG	1 cut(s)	765
BspLI	GGNNCC	1 cut(s)	299
BspMI	ACCTGC	4 cut(s)	49, 773, 838, 951
BspPI	GGATC	4 cut(s)	163, 388, 415, 744
BspQI	GCTCTTC	2 cut(s)	579, 920
BsrDI	GCAATG	1 cut(s)	576
BsrGI	TGTACA	2 cut(s)	654, 1233
BsrI	ACTGG	4 cut(s)	321, 717, 1070, 1148
BssMI	GATC	6 cut(s)	168, 393, 420, 736, 1126, 1268
BssNAI	GTATAC	1 cut(s)	714
BssSI	CACGAG	1 cut(s)	1030
Bst1107I	GTATAC	1 cut(s)	714
Bst2BI	CACGAG	1 cut(s)	1030
Bst6I	CTCTTC	3 cut(s)	579, 920, 1013
BstAUI	TGTACA	2 cut(s)	654, 1233
BstC8I	GCNNGC	1 cut(s)	269
BstDEI	CTNAG	2 cut(s)	752, 1018
BstF5I	GGATG	8 cut(s)	60, 268, 327, 504, 861, 1041, 1119, 1223
BstKTI	GATC	6 cut(s)	171, 396, 423, 739, 1129, 1271
BstMAI	GTCTC	2 cut(s)	1016, 1059
BstMBI	GATC	6 cut(s)	168, 393, 420, 736, 1126, 1268
BstMCI	CGRYCG	1 cut(s)	601
BstMWI	GCNNNNNNNGC	1 cut(s)	55
BstNSI	RCATGY	1 cut(s)	1082
BstSCI	CCNGG	2 cut(s)	171, 276
BstSLI	GKGCMC	1 cut(s)	108
BstV1I	GCAGC	1 cut(s)	601
BstV2I	GAAGAC	1 cut(s)	358
BstX2I	RGATCY	3 cut(s)	168, 393, 420
BstYI	RGATCY	3 cut(s)	168, 393, 420
BstZ17I	GTATAC	1 cut(s)	714
BstZI	CGGCCG	1 cut(s)	598
BsuRI	GGCC	4 cut(s)	600, 674, 932, 1264
BtgZI	GCGATG	2 cut(s)	150, 487
BtsCI	GGATG	8 cut(s)	60, 268, 327, 504, 861, 1041, 1119, 1223
BveI	ACCTGC	4 cut(s)	49, 773, 838, 951
Cac8I	GCNNGC	1 cut(s)	269
Cfr13I	GGNCC	2 cut(s)	298, 827
Csp6I	GTAC	3 cut(s)	655, 1027, 1234
CviAII	CATG	6 cut(s)	122, 256, 548, 608, 946, 1079
CviQI	GTAC	3 cut(s)	655, 1027, 1234
DdeI	CTNAG	2 cut(s)	752, 1018
DpnI	GATC	6 cut(s)	170, 395, 422, 738, 1128, 1270
DpnII	GATC	6 cut(s)	168, 393, 420, 736, 1126, 1268
DraI	TTTAAA	1 cut(s)	360
EaeI	YGGCCR	3 cut(s)	598, 672, 1262
EagI	CGGCCG	1 cut(s)	598
Eam1104I	CTCTTC	3 cut(s)	579, 920, 1013
EarI	CTCTTC	3 cut(s)	579, 920, 1013
Ecl136II	GAGCTC	2 cut(s)	271, 555
EclXI	CGGCCG	1 cut(s)	598
Eco24I	GRGCYC	2 cut(s)	273, 557
Eco47I	GGWCC	2 cut(s)	298, 827
Eco52I	CGGCCG	1 cut(s)	598
Eco53kI	GAGCTC	2 cut(s)	271, 555
Eco57I	CTGAAG	1 cut(s)	728
EcoICRI	GAGCTC	2 cut(s)	271, 555
EcoT38I	GRGCYC	2 cut(s)	273, 557
Esp3I	CGTCTC	1 cut(s)	1016
FaeI	CATG	6 cut(s)	125, 259, 551, 611, 949, 1082
FalI	AAGNNNNNCTT	4 cut(s)	102, 134, 450, 482
FaqI	GGGAC	1 cut(s)	311
FatI	CATG	6 cut(s)	121, 255, 547, 607, 945, 1078
FauNDI	CATATG	1 cut(s)	283
FblI	GTMKAC	1 cut(s)	713
Fnu4HI	GCNGC	1 cut(s)	590
FokI	GGATG	8 cut(s)	47, 275, 314, 511, 868, 1048, 1106, 1230
FriOI	GRGCYC	2 cut(s)	273, 557
Fsp4HI	GCNGC	1 cut(s)	590
FspBI	CTAG	2 cut(s)	632, 1130
GluI	GCNGC	1 cut(s)	590
HaeIII	GGCC	4 cut(s)	600, 674, 932, 1264
HapII	CCGG	2 cut(s)	172, 278
Hin1II	CATG	6 cut(s)	125, 259, 551, 611, 949, 1082
HincII	GTYRAC	1 cut(s)	163
HindII	GTYRAC	1 cut(s)	163
HindIII	AAGCTT	2 cut(s)	47, 575
HinfI	GANTC	3 cut(s)	176, 463, 1052
HpaI	GTTAAC	1 cut(s)	163
HpaII	CCGG	2 cut(s)	172, 278
HphI	GGTGA	3 cut(s)	206, 221, 596
Hpy166II	GTNNAC	5 cut(s)	106, 163, 714, 1029, 1111
Hpy188I	TCNGA	2 cut(s)	1245, 1273
Hpy188III	TCNNGA	3 cut(s)	467, 1130, 1215
Hpy8I	GTNNAC	5 cut(s)	106, 163, 714, 1029, 1111
Hpy99I	CGWCG	1 cut(s)	855
HpyAV	CCTTC	6 cut(s)	10, 128, 242, 253, 771, 943
HpyCH4IV	ACGT	2 cut(s)	67, 1025
HpyF10VI	GCNNNNNNNGC	1 cut(s)	55
HpyF3I	CTNAG	2 cut(s)	752, 1018
HpySE526I	ACGT	2 cut(s)	67, 1025
Hsp92II	CATG	6 cut(s)	125, 259, 551, 611, 949, 1082
KspAI	GTTAAC	1 cut(s)	163
Kzo9I	GATC	6 cut(s)	168, 393, 420, 736, 1126, 1268
LguI	GCTCTTC	2 cut(s)	579, 920
LmnI	GCTCC	1 cut(s)	388
Lsp1109I	GCAGC	1 cut(s)	601
LweI	GCATC	1 cut(s)	464
MaeI	CTAG	2 cut(s)	632, 1130
MaeII	ACGT	2 cut(s)	67, 1025
MaeIII	GTNAC	5 cut(s)	251, 286, 316, 602, 876
MalI	GATC	6 cut(s)	170, 395, 422, 738, 1128, 1270
MboI	GATC	6 cut(s)	168, 393, 420, 736, 1126, 1268
MfeI	CAATTG	1 cut(s)	919
MflI	RGATCY	3 cut(s)	168, 393, 420
MhlI	GDGCHC	3 cut(s)	108, 273, 557
MlsI	TGGCCA	1 cut(s)	674
MluCI	AATT	5 cut(s)	371, 773, 841, 919, 990
MluNI	TGGCCA	1 cut(s)	674
MlyI	GAGTC	1 cut(s)	1061
MmeI	TCCRAC	2 cut(s)	88, 805
MnlI	CCTC	5 cut(s)	237, 439, 697, 718, 1026
Mox20I	TGGCCA	1 cut(s)	674
MscI	TGGCCA	1 cut(s)	674
MseI	TTAA	4 cut(s)	162, 359, 453, 668
MslI	CAYNNNNRTG	2 cut(s)	950, 1034
Msp20I	TGGCCA	1 cut(s)	674
MspA1I	CMGCKG	1 cut(s)	1049
MspI	CCGG	2 cut(s)	172, 278
MspR9I	CCNGG	2 cut(s)	173, 278
MunI	CAATTG	1 cut(s)	919
MwoI	GCNNNNNNNGC	1 cut(s)	55
NciI	CCSGG	2 cut(s)	173, 278
NdeI	CATATG	1 cut(s)	283
NdeII	GATC	6 cut(s)	168, 393, 420, 736, 1126, 1268
NlaIII	CATG	6 cut(s)	125, 259, 551, 611, 949, 1082
NlaIV	GGNNCC	1 cut(s)	299
NmuCI	GTSAC	3 cut(s)	251, 602, 876
NspI	RCATGY	1 cut(s)	1082
PciSI	GCTCTTC	2 cut(s)	579, 920
PfeI	GAWTC	2 cut(s)	176, 463
PfoI	TCCNGGA	1 cut(s)	171
PkrI	GCNGC	1 cut(s)	591
PleI	GAGTC	1 cut(s)	1060
PpsI	GAGTC	1 cut(s)	1060
PsiI	TTATAA	1 cut(s)	893
Psp124BI	GAGCTC	2 cut(s)	273, 557
PspN4I	GGNNCC	1 cut(s)	299
PspPI	GGNCC	2 cut(s)	298, 827
PsuI	RGATCY	3 cut(s)	168, 393, 420
RsaI	GTAC	3 cut(s)	656, 1028, 1235
RsaNI	GTAC	3 cut(s)	655, 1027, 1234
RseI	CAYNNNNRTG	2 cut(s)	950, 1034
SacI	GAGCTC	2 cut(s)	273, 557
SapI	GCTCTTC	2 cut(s)	579, 920
SaqAI	TTAA	4 cut(s)	162, 359, 453, 668
SatI	GCNGC	1 cut(s)	590
Sau3AI	GATC	6 cut(s)	168, 393, 420, 736, 1126, 1268
Sau96I	GGNCC	2 cut(s)	298, 827
SchI	GAGTC	1 cut(s)	1061
ScrFI	CCNGG	2 cut(s)	173, 278
SduI	GDGCHC	3 cut(s)	108, 273, 557
SfaNI	GCATC	1 cut(s)	464
SinI	GGWCC	2 cut(s)	298, 827
SmiMI	CAYNNNNRTG	2 cut(s)	950, 1034
SmlI	CTYRAG	1 cut(s)	467
SmoI	CTYRAG	1 cut(s)	467
Sse9I	AATT	5 cut(s)	371, 773, 841, 919, 990
SsiI	CCGC	2 cut(s)	1049, 1186
SspI	AATATT	1 cut(s)	151
SspMI	CTAG	2 cut(s)	632, 1130
SstI	GAGCTC	2 cut(s)	273, 557
StyD4I	CCNGG	2 cut(s)	171, 276
TaiI	ACGT	2 cut(s)	70, 1028
TaqI	TCGA	1 cut(s)	273
TasI	AATT	5 cut(s)	371, 773, 841, 919, 990
TatI	WGTACW	2 cut(s)	654, 1233
TfiI	GAWTC	2 cut(s)	176, 463
Tru1I	TTAA	4 cut(s)	162, 359, 453, 668
Tru9I	TTAA	4 cut(s)	162, 359, 453, 668
TseFI	GTSAC	3 cut(s)	251, 602, 876
TseI	GCWGC	1 cut(s)	589
Tsp45I	GTSAC	3 cut(s)	251, 602, 876
TspDTI	ATGAA	7 cut(s)	110, 272, 515, 587, 693, 875, 1000
TspGWI	ACGGA	2 cut(s)	320, 868
VneI	GTGCAC	1 cut(s)	104
VpaK11BI	GGWCC	2 cut(s)	298, 827
XapI	RAATTY	2 cut(s)	371, 773
XbaI	TCTAGA	1 cut(s)	1129
XceI	RCATGY	1 cut(s)	1082
XmiI	GTMKAC	1 cut(s)	713
XspI	CTAG	2 cut(s)	632, 1130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.