Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0018104

Physical Location & Seq

Genomic Coordinates Reverse (-)

36597717 .. 36598755

Gene Structure 1039 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1286600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGAACTCCACCCTCAAGATTAATGATGGGAAACCATCTCTCACCTCTGAGCTCTTTGATTCCGCTAAGCTTGATATCGATTTGACTTGTTCTATATGCTTGGACACGGTTTTTGATCCAGTTGCTCTCAAATGTGGTCACATATTCTGCTACATGTGTGCTTGCTCGGCCGCATCAGTGACTATTGTCGATGGATTGAAGTCCGCAGAGCCTAAAGAAAAATGCCCTCTATGCCGAGAGGCAAGAGTTTTCCAAGGCGCTGTGCATTTAGAAGAGCTCAACATGTTACTTAGCAGAAACTGCCGTGAATACTGGGAGCAGAGACTCCAGACCGAGAGGGTAGAGAGGGTTCGGCAAGCAAAGCAGCACTGGGAATTCCAGTGCCGGGCATTCGTTGGCATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006082 GO:0006464 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0008219 GO:0009056 GO:0009057 GO:0009058 GO:0009605 GO:0009607 GO:0009617 GO:0009626 GO:0009627 GO:0009696 GO:0009697 GO:0009719 GO:0009725 GO:0009751 GO:0009814 GO:0009987 GO:0010033 GO:0010035 GO:0010167 GO:0010337 GO:0010498 GO:0010565 GO:0010817 GO:0012501 GO:0014070 GO:0016020 GO:0016053 GO:0016567 GO:0016740 GO:0016999 GO:0017000 GO:0017144 GO:0018958 GO:0019222 GO:0019438 GO:0019538 GO:0019752 GO:0019787 GO:0019941 GO:0030163 GO:0031323 GO:0032350 GO:0032446 GO:0032787 GO:0033554 GO:0034050 GO:0036211 GO:0042221 GO:0042445 GO:0042446 GO:0042493 GO:0042537 GO:0042742 GO:0043161 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0045087 GO:0046189 GO:0046394 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0051716 GO:0061630 GO:0061659 GO:0062012 GO:0065007 GO:0065008 GO:0070647 GO:0071704 GO:0071944 GO:0072330 GO:0080021 GO:0098542 GO:0140096 GO:1901360 GO:1901362 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1901615 GO:1901617 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4 zf-C3HC4_3 zf-RING_UBOX

Protein Analysis

135

Amino Acids

15.25

Weight (kDa)

6.29

Isoelectric Point (pI)

33.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RING_XB3-XBAT31	PF24921	29 - 81	2.3e-08	E3 ubiquitin-protein ligase XB3/XBAT31 RING finger
zf-C3HC4	PF00097	30 - 78	1.2e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	30 - 63	1e-06	RING-type zinc-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018104)

Species	Orthologous Gene IDs
malus_domestica	MD03G1286600.v1.1
rosa_chinensis	RchiOBHm_Chr2g0112121
rosa_laevigata	RLG00000017953
rosa_multiflora	Rmu_sc0000360.1_g000017 Rmu_sc0001294.1_g000020
rosa_roxburghii	Rroxscaffold_2G00131750
rosa_rugosa	Rorug02G0178500
rosa_samantha	Rh2AG230600 Rh2BG243800 Rh2CG235200 Rh2DG238500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	63, 171, 204
AclWI	GGATC	1 cut(s)	110
AcoI	YGGCCR	1 cut(s)	168
AcsI	RAATTY	1 cut(s)	374
AfiI	CCNNNNNNNGG	1 cut(s)	385
AflIII	ACRYGT	2 cut(s)	153, 282
AgsI	TTSAA	1 cut(s)	199
AluBI	AGCT	3 cut(s)	52, 70, 277
AluI	AGCT	3 cut(s)	52, 70, 277
Alw21I	GWGCWC	2 cut(s)	54, 279
Alw26I	GTCTC	1 cut(s)	316
AlwI	GGATC	1 cut(s)	110
AlwNI	CAGNNNCTG	1 cut(s)	300
AoxI	GGCC	1 cut(s)	168
ApeKI	GCWGC	1 cut(s)	364
ApoI	RAATTY	1 cut(s)	374
ArsI	GACNNNNNNTTYG	2 cut(s)	95, 127
AseI	ATTAAT	1 cut(s)	21
AspLEI	GCGC	1 cut(s)	260
AsuC2I	CCSGG	1 cut(s)	386
AsuHPI	GGTGA	1 cut(s)	34
BanII	GRGCYC	2 cut(s)	54, 279
Bbv12I	GWGCWC	2 cut(s)	54, 279
BbvI	GCAGC	1 cut(s)	376
BccI	CCATC	3 cut(s)	20, 43, 185
BceAI	ACGGC	1 cut(s)	288
BcnI	CCSGG	1 cut(s)	386
BcoDI	GTCTC	1 cut(s)	316
BfoI	RGCGCY	1 cut(s)	261
BisI	GCNGC	2 cut(s)	171, 365
BlpI	GCTNAGC	1 cut(s)	66
BlsI	GCNGC	2 cut(s)	172, 366
Bme1390I	CCNGG	1 cut(s)	386
BmrFI	CCNGG	1 cut(s)	386
BmrI	ACTGGG	2 cut(s)	322, 379
BmsI	GCATC	1 cut(s)	182
BmuI	ACTGGG	2 cut(s)	322, 379
BoxI	GACNNNNGTC	1 cut(s)	185
BpmI	CTGGAG	1 cut(s)	311
Bpu1102I	GCTNAGC	1 cut(s)	66
BpuMI	CCSGG	1 cut(s)	386
Bsa29I	ATCGAT	1 cut(s)	78
BsaJI	CCNNGG	1 cut(s)	253
Bsc4I	CCNNNNNNNGG	1 cut(s)	385
Bse1I	ACTGG	4 cut(s)	119, 317, 374, 379
BseCI	ATCGAT	1 cut(s)	78
BseDI	CCNNGG	1 cut(s)	253
BseLI	CCNNNNNNNGG	1 cut(s)	385
BseMII	CTCAG	1 cut(s)	39
BseNI	ACTGG	4 cut(s)	119, 317, 374, 379
BseX3I	CGGCCG	1 cut(s)	168
BseXI	GCAGC	1 cut(s)	376
Bsh1285I	CGRYCG	1 cut(s)	171
BshFI	GGCC	1 cut(s)	170
BshVI	ATCGAT	1 cut(s)	78
BsiEI	CGRYCG	1 cut(s)	171
BsiHKAI	GWGCWC	2 cut(s)	54, 279
BsiSI	CCGG	1 cut(s)	385
BslI	CCNNNNNNNGG	1 cut(s)	385
BsmAI	GTCTC	1 cut(s)	316
BsmI	GAATGC	1 cut(s)	389
BsnI	GGCC	1 cut(s)	170
Bsp1286I	GDGCHC	2 cut(s)	54, 279
Bsp143I	GATC	1 cut(s)	115
Bsp1720I	GCTNAGC	1 cut(s)	66
BspACI	CCGC	3 cut(s)	63, 171, 204
BspANI	GGCC	1 cut(s)	170
BspCNI	CTCAG	1 cut(s)	40
BspDI	ATCGAT	1 cut(s)	78
BspPI	GGATC	1 cut(s)	110
BspQI	GCTCTTC	1 cut(s)	267
BsrI	ACTGG	4 cut(s)	119, 317, 374, 379
BssECI	CCNNGG	1 cut(s)	253
BssMI	GATC	1 cut(s)	115
BssT1I	CCWWGG	1 cut(s)	253
Bst4CI	ACNGT	1 cut(s)	109
Bst6I	CTCTTC	1 cut(s)	267
BstAPI	GCANNNNNTGC	1 cut(s)	300
BstC8I	GCNNGC	2 cut(s)	163, 357
BstDEI	CTNAG	3 cut(s)	48, 66, 290
BstH2I	RGCGCY	1 cut(s)	261
BstHHI	GCGC	1 cut(s)	260
BstKTI	GATC	1 cut(s)	118
BstMAI	GTCTC	1 cut(s)	316
BstMBI	GATC	1 cut(s)	115
BstMCI	CGRYCG	1 cut(s)	171
BstMWI	GCNNNNNNNGC	4 cut(s)	167, 231, 300, 361
BstNSI	RCATGY	2 cut(s)	157, 286
BstPAI	GACNNNNGTC	1 cut(s)	185
BstSCI	CCNGG	1 cut(s)	384
BstV1I	GCAGC	1 cut(s)	376
BstZI	CGGCCG	1 cut(s)	168
Bsu15I	ATCGAT	1 cut(s)	78
BsuRI	GGCC	1 cut(s)	170
BsuTUI	ATCGAT	1 cut(s)	78
BtsIMutI	CAGTG	3 cut(s)	183, 367, 386
Cac8I	GCNNGC	2 cut(s)	163, 357
CaiI	CAGNNNCTG	1 cut(s)	300
CfoI	GCGC	1 cut(s)	260
ClaI	ATCGAT	1 cut(s)	78
CviAII	CATG	2 cut(s)	154, 283
CviJI	RGCY	5 cut(s)	52, 70, 170, 211, 277
CviKI_1	RGCY	5 cut(s)	52, 70, 170, 211, 277
DdeI	CTNAG	3 cut(s)	48, 66, 290
DpnI	GATC	1 cut(s)	117
DpnII	GATC	1 cut(s)	115
EaeI	YGGCCR	1 cut(s)	168
EagI	CGGCCG	1 cut(s)	168
Eam1104I	CTCTTC	1 cut(s)	267
EarI	CTCTTC	1 cut(s)	267
Ecl136II	GAGCTC	2 cut(s)	52, 277
EclXI	CGGCCG	1 cut(s)	168
Eco130I	CCWWGG	1 cut(s)	253
Eco24I	GRGCYC	2 cut(s)	54, 279
Eco32I	GATATC	1 cut(s)	76
Eco52I	CGGCCG	1 cut(s)	168
Eco53kI	GAGCTC	2 cut(s)	52, 277
EcoICRI	GAGCTC	2 cut(s)	52, 277
EcoRI	GAATTC	1 cut(s)	374
EcoRV	GATATC	1 cut(s)	76
EcoT14I	CCWWGG	1 cut(s)	253
EcoT38I	GRGCYC	2 cut(s)	54, 279
ErhI	CCWWGG	1 cut(s)	253
FaeI	CATG	2 cut(s)	157, 286
FaiI	YATR	6 cut(s)	95, 97, 143, 155, 232, 284
FatI	CATG	2 cut(s)	153, 282
Fnu4HI	GCNGC	2 cut(s)	171, 365
FriOI	GRGCYC	2 cut(s)	54, 279
Fsp4HI	GCNGC	2 cut(s)	171, 365
GlaI	GCGC	1 cut(s)	259
GluI	GCNGC	2 cut(s)	171, 365
GsuI	CTGGAG	1 cut(s)	311
HaeII	RGCGCY	1 cut(s)	261
HaeIII	GGCC	1 cut(s)	170
HapII	CCGG	1 cut(s)	385
HhaI	GCGC	1 cut(s)	260
Hin1II	CATG	2 cut(s)	157, 286
Hin6I	GCGC	1 cut(s)	258
HinP1I	GCGC	1 cut(s)	258
HindIII	AAGCTT	1 cut(s)	68
HinfI	GANTC	2 cut(s)	59, 324
HpaII	CCGG	1 cut(s)	385
HphI	GGTGA	1 cut(s)	34
Hpy188I	TCNGA	1 cut(s)	49
Hpy188III	TCNNGA	2 cut(s)	16, 328
HpyCH4III	ACNGT	1 cut(s)	109
HpyCH4V	TGCA	1 cut(s)	265
HpyF10VI	GCNNNNNNNGC	4 cut(s)	167, 231, 300, 361
HpyF3I	CTNAG	3 cut(s)	48, 66, 290
Hsp92II	CATG	2 cut(s)	157, 286
HspAI	GCGC	1 cut(s)	258
Kzo9I	GATC	1 cut(s)	115
LguI	GCTCTTC	1 cut(s)	267
LmnI	GCTCC	1 cut(s)	316
LpnPI	CCDG	6 cut(s)	132, 298, 341, 355, 392, 398
Lsp1109I	GCAGC	1 cut(s)	376
LweI	GCATC	1 cut(s)	182
MaeIII	GTNAC	3 cut(s)	137, 178, 285
MalI	GATC	1 cut(s)	117
MboI	GATC	1 cut(s)	115
MboII	GAAGA	1 cut(s)	284
MhlI	GDGCHC	2 cut(s)	54, 279
MluCI	AATT	1 cut(s)	374
MlyI	GAGTC	1 cut(s)	318
MnlI	CCTC	6 cut(s)	23, 55, 232, 237, 330, 339
MseI	TTAA	1 cut(s)	21
MspI	CCGG	1 cut(s)	385
MspR9I	CCNGG	1 cut(s)	386
Mva1269I	GAATGC	1 cut(s)	389
MwoI	GCNNNNNNNGC	4 cut(s)	167, 231, 300, 361
NciI	CCSGG	1 cut(s)	386
NdeII	GATC	1 cut(s)	115
NlaIII	CATG	2 cut(s)	157, 286
NmeAIII	GCCGAG	2 cut(s)	146, 260
NmuCI	GTSAC	2 cut(s)	137, 178
NspI	RCATGY	2 cut(s)	157, 286
PciI	ACATGT	2 cut(s)	153, 282
PciSI	GCTCTTC	1 cut(s)	267
PctI	GAATGC	1 cut(s)	389
PfeI	GAWTC	1 cut(s)	59
PkrI	GCNGC	2 cut(s)	172, 366
PleI	GAGTC	1 cut(s)	318
PpsI	GAGTC	1 cut(s)	318
PscI	ACATGT	2 cut(s)	153, 282
PshAI	GACNNNNGTC	1 cut(s)	185
PshBI	ATTAAT	1 cut(s)	21
Psp124BI	GAGCTC	2 cut(s)	54, 279
PsrI	GAACNNNNNNTAC	2 cut(s)	333, 365
PstNI	CAGNNNCTG	1 cut(s)	300
SacI	GAGCTC	2 cut(s)	54, 279
SapI	GCTCTTC	1 cut(s)	267
SaqAI	TTAA	1 cut(s)	21
SatI	GCNGC	2 cut(s)	171, 365
Sau3AI	GATC	1 cut(s)	115
SchI	GAGTC	1 cut(s)	318
ScrFI	CCNGG	1 cut(s)	386
SduI	GDGCHC	2 cut(s)	54, 279
SetI	ASST	4 cut(s)	47, 54, 72, 279
SfaNI	GCATC	1 cut(s)	182
SmlI	CTYRAG	1 cut(s)	14
SmoI	CTYRAG	1 cut(s)	14
Sse9I	AATT	1 cut(s)	374
SsiI	CCGC	3 cut(s)	63, 171, 204
SstI	GAGCTC	2 cut(s)	54, 279
StyD4I	CCNGG	1 cut(s)	384
StyI	CCWWGG	1 cut(s)	253
TaaI	ACNGT	1 cut(s)	109
TaqI	TCGA	2 cut(s)	78, 189
TaqII	GACCGA	1 cut(s)	347
TasI	AATT	1 cut(s)	374
TauI	GCSGC	1 cut(s)	173
TfiI	GAWTC	1 cut(s)	59
Tru1I	TTAA	1 cut(s)	21
Tru9I	TTAA	1 cut(s)	21
TscAI	CASTG	3 cut(s)	183, 374, 386
TseFI	GTSAC	2 cut(s)	137, 178
TseI	GCWGC	1 cut(s)	364
Tsp45I	GTSAC	2 cut(s)	137, 178
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	3 cut(s)	183, 374, 386
VspI	ATTAAT	1 cut(s)	21
XapI	RAATTY	1 cut(s)	374
XceI	RCATGY	2 cut(s)	157, 286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.