Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0018104

Physical Location & Seq

Genomic Coordinates Reverse (-)

24023131 .. 24028235

Gene Structure 5105 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG238500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGAAATTCGCTGATAGATATCAGCAATTTATGAAAGAGCAAAAAGAAGAAGTACCAGTCATCCGACTAAGCAATCTCAAGGCTGTTTTGAAGAACTGTGAGATCAAGGACATGCACCCCAAAGATAGAAATACTGAAGAAGACTGTGATTGTCCAGTATGTGACAGGACATTTTTCCCTTCCATTCTCAAGGACATGTCTGTGGTAGTGAACTTCTTTAACAAGCGTGCACAGGAGTTACTATACTCCCATTTGGCTTCTGGCTTTAAGAAGTACATTTTACATCTTAAAAGGAAGTTAAAGTTGAAAGCAAGCCATGAAAATATGATAAAAGAAGCGCAAGACCTTGTAGGCTACGCTACAATTACTGCTTTTGCTGTACAGAAGATCCTGAAGAAATATGATAAGGTTCACTGCTCGAAGAAGGGACAAAGGTTTAAATATCAAGCTCAAACTATGAAACTTGAGCTCCTAAAATCCCCATGGCTTTTGGAACTAATGGCATTACACATTAACGTGAGTAAAAACAGAGATGAACGCAAGACGATTTGGTTTGTTGACTTCTCACTTCACAAAGATAATGAGCACAGACCACTGTTTTTGGTTAATCTTCCCCACTCATTAGAGCTGAATCTTGATCTAACATGCCCAATTTGCTTGGACACTGTCTTTGATCCAGTTTTCCTCACCTGCAGCCATATACTCTGCCATATGTGTGCTTGTTCGGTTGCATCAGTCACCATTGTTGAGGGACTACGGGCTGCAACTTCTGCAAAGAAATGCCCAATTTGCCGAAAGGTATGTACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006082 GO:0006464 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0008219 GO:0009056 GO:0009057 GO:0009058 GO:0009605 GO:0009607 GO:0009617 GO:0009626 GO:0009627 GO:0009696 GO:0009697 GO:0009719 GO:0009725 GO:0009751 GO:0009814 GO:0009987 GO:0010033 GO:0010035 GO:0010167 GO:0010337 GO:0010498 GO:0010565 GO:0010817 GO:0012501 GO:0014070 GO:0016020 GO:0016053 GO:0016567 GO:0016740 GO:0016999 GO:0017000 GO:0017144 GO:0018958 GO:0019222 GO:0019438 GO:0019538 GO:0019752 GO:0019787 GO:0019941 GO:0030163 GO:0031323 GO:0032350 GO:0032446 GO:0032787 GO:0033554 GO:0034050 GO:0036211 GO:0042221 GO:0042445 GO:0042446 GO:0042493 GO:0042537 GO:0042742 GO:0043161 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0045087 GO:0046189 GO:0046394 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0051716 GO:0061630 GO:0061659 GO:0062012 GO:0065007 GO:0065008 GO:0070647 GO:0071704 GO:0071944 GO:0072330 GO:0080021 GO:0098542 GO:0140096 GO:1901360 GO:1901362 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1901615 GO:1901617 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4 zf-C3HC4_3 zf-RING_UBOX

Protein Analysis

269

Amino Acids

31.18

Weight (kDa)

9.1

Isoelectric Point (pI)

39.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018104)

Species	Orthologous Gene IDs
malus_domestica	MD03G1286600.v1.1
rosa_chinensis	RchiOBHm_Chr2g0112121
rosa_laevigata	RLG00000017953
rosa_multiflora	Rmu_sc0000360.1_g000017 Rmu_sc0001294.1_g000020
rosa_roxburghii	Rroxscaffold_2G00131750
rosa_rugosa	Rorug02G0178500
rosa_samantha	Rh2AG230600 Rh2BG243800 Rh2CG235200 Rh2DG238500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	698
Acc36I	ACCTGC	1 cut(s)	698
AclWI	GGATC	2 cut(s)	382, 668
AcsI	RAATTY	1 cut(s)	5
AcuI	CTGAAG	2 cut(s)	156, 413
AfaI	GTAC	4 cut(s)	54, 275, 381, 805
AflIII	ACRYGT	1 cut(s)	195
AgsI	TTSAA	2 cut(s)	91, 307
AluBI	AGCT	3 cut(s)	449, 469, 628
AluI	AGCT	3 cut(s)	449, 469, 628
Alw21I	GWGCWC	3 cut(s)	232, 471, 588
Alw44I	GTGCAC	1 cut(s)	228
AlwI	GGATC	2 cut(s)	382, 668
ApaLI	GTGCAC	1 cut(s)	228
ApeKI	GCWGC	2 cut(s)	693, 761
ApoI	RAATTY	1 cut(s)	5
ArsI	GACNNNNNNTTYG	2 cut(s)	653, 685
AspLEI	GCGC	1 cut(s)	340
AsuHPI	GGTGA	2 cut(s)	679, 730
BaeGI	GKGCMC	1 cut(s)	232
BanII	GRGCYC	1 cut(s)	471
BbsI	GAAGAC	1 cut(s)	147
Bbv12I	GWGCWC	3 cut(s)	232, 471, 588
BbvI	GCAGC	2 cut(s)	705, 748
BfmI	CTRYAG	1 cut(s)	691
BfuAI	ACCTGC	1 cut(s)	698
BisI	GCNGC	2 cut(s)	694, 762
BlsI	GCNGC	2 cut(s)	695, 763
BmsI	GCATC	1 cut(s)	740
BpiI	GAAGAC	1 cut(s)	147
BpuEI	CTTGAG	3 cut(s)	62, 173, 485
BsaAI	YACGTR	1 cut(s)	807
BsaBI	GATNNNNATC	1 cut(s)	18
BsaJI	CCNNGG	1 cut(s)	482
BsaXI	ACNNNNNCTCC	2 cut(s)	453, 483
Bse1I	ACTGG	3 cut(s)	56, 155, 677
Bse8I	GATNNNNATC	1 cut(s)	18
BseDI	CCNNGG	1 cut(s)	482
BseGI	GGATG	1 cut(s)	60
BseJI	GATNNNNATC	1 cut(s)	18
BseNI	ACTGG	3 cut(s)	56, 155, 677
BseSI	GKGCMC	1 cut(s)	232
BseXI	GCAGC	2 cut(s)	705, 748
BsiHKAI	GWGCWC	3 cut(s)	232, 471, 588
BslFI	GGGAC	2 cut(s)	441, 765
BsmFI	GGGAC	2 cut(s)	441, 765
Bsp1286I	GDGCHC	3 cut(s)	232, 471, 588
Bsp1407I	TGTACA	1 cut(s)	379
Bsp143I	GATC	4 cut(s)	102, 387, 637, 673
Bsp19I	CCATGG	1 cut(s)	482
BspMAI	CTGCAG	1 cut(s)	695
BspMI	ACCTGC	1 cut(s)	698
BspPI	GGATC	2 cut(s)	382, 668
BsrGI	TGTACA	1 cut(s)	379
BsrI	ACTGG	3 cut(s)	56, 155, 677
BssECI	CCNNGG	1 cut(s)	482
BssMI	GATC	4 cut(s)	102, 387, 637, 673
BssT1I	CCWWGG	1 cut(s)	482
Bst4CI	ACNGT	4 cut(s)	98, 146, 597, 667
BstAPI	GCANNNNNTGC	1 cut(s)	770
BstAUI	TGTACA	1 cut(s)	379
BstBAI	YACGTR	1 cut(s)	807
BstC8I	GCNNGC	2 cut(s)	228, 313
BstDEI	CTNAG	1 cut(s)	68
BstDSI	CCRYGG	1 cut(s)	482
BstF5I	GGATG	1 cut(s)	60
BstHHI	GCGC	1 cut(s)	340
BstKTI	GATC	4 cut(s)	105, 390, 640, 676
BstMBI	GATC	4 cut(s)	102, 387, 637, 673
BstMWI	GCNNNNNNNGC	3 cut(s)	654, 770, 789
BstNSI	RCATGY	3 cut(s)	115, 199, 648
BstSFI	CTRYAG	1 cut(s)	691
BstSLI	GKGCMC	1 cut(s)	232
BstSNI	TACGTA	1 cut(s)	807
BstV1I	GCAGC	2 cut(s)	705, 748
BstV2I	GAAGAC	1 cut(s)	147
BstX2I	RGATCY	1 cut(s)	387
BstYI	RGATCY	1 cut(s)	387
BtgI	CCRYGG	1 cut(s)	482
BtsCI	GGATG	1 cut(s)	60
BtsI	GCAGTG	1 cut(s)	412
BtsIMutI	CAGTG	3 cut(s)	412, 593, 663
BveI	ACCTGC	1 cut(s)	698
Cac8I	GCNNGC	2 cut(s)	228, 313
CfoI	GCGC	1 cut(s)	340
Csp6I	GTAC	4 cut(s)	53, 274, 380, 804
CspCI	CAANNNNNGTGG	2 cut(s)	582, 617
CviAII	CATG	5 cut(s)	112, 196, 317, 483, 645
CviQI	GTAC	4 cut(s)	53, 274, 380, 804
DdeI	CTNAG	1 cut(s)	68
DpnI	GATC	4 cut(s)	104, 389, 639, 675
DpnII	GATC	4 cut(s)	102, 387, 637, 673
DraI	TTTAAA	1 cut(s)	439
Ecl136II	GAGCTC	1 cut(s)	469
Eco105I	TACGTA	1 cut(s)	807
Eco130I	CCWWGG	1 cut(s)	482
Eco24I	GRGCYC	1 cut(s)	471
Eco32I	GATATC	1 cut(s)	20
Eco53kI	GAGCTC	1 cut(s)	469
Eco57I	CTGAAG	2 cut(s)	156, 413
EcoICRI	GAGCTC	1 cut(s)	469
EcoRV	GATATC	1 cut(s)	20
EcoT14I	CCWWGG	1 cut(s)	482
EcoT38I	GRGCYC	1 cut(s)	471
ErhI	CCWWGG	1 cut(s)	482
FaeI	CATG	5 cut(s)	115, 199, 320, 486, 648
FaqI	GGGAC	2 cut(s)	441, 765
FatI	CATG	5 cut(s)	111, 195, 316, 482, 644
FauNDI	CATATG	1 cut(s)	711
Fnu4HI	GCNGC	2 cut(s)	694, 762
FokI	GGATG	1 cut(s)	47
FriOI	GRGCYC	1 cut(s)	471
Fsp4HI	GCNGC	2 cut(s)	694, 762
GlaI	GCGC	1 cut(s)	339
GluI	GCNGC	2 cut(s)	694, 762
HhaI	GCGC	1 cut(s)	340
Hin1II	CATG	5 cut(s)	115, 199, 320, 486, 648
Hin6I	GCGC	1 cut(s)	338
HinP1I	GCGC	1 cut(s)	338
HincII	GTYRAC	1 cut(s)	559
HindII	GTYRAC	1 cut(s)	559
HinfI	GANTC	1 cut(s)	631
HphI	GGTGA	2 cut(s)	679, 730
Hpy166II	GTNNAC	4 cut(s)	211, 230, 412, 559
Hpy188I	TCNGA	1 cut(s)	65
Hpy188III	TCNNGA	2 cut(s)	391, 635
Hpy8I	GTNNAC	4 cut(s)	211, 230, 412, 559
HpyAV	CCTTC	2 cut(s)	189, 418
HpyCH4III	ACNGT	4 cut(s)	98, 146, 597, 667
HpyCH4IV	ACGT	2 cut(s)	516, 806
HpyCH4V	TGCA	6 cut(s)	115, 230, 693, 731, 764, 773
HpyF10VI	GCNNNNNNNGC	3 cut(s)	654, 770, 789
HpyF3I	CTNAG	1 cut(s)	68
HpySE526I	ACGT	2 cut(s)	516, 806
Hsp92II	CATG	5 cut(s)	115, 199, 320, 486, 648
HspAI	GCGC	1 cut(s)	338
Kzo9I	GATC	4 cut(s)	102, 387, 637, 673
LmnI	GCTCC	1 cut(s)	474
LpnPI	CCDG	8 cut(s)	69, 151, 168, 218, 246, 404, 690, 703
Lsp1109I	GCAGC	2 cut(s)	705, 748
LweI	GCATC	1 cut(s)	740
MaeII	ACGT	2 cut(s)	516, 806
MaeIII	GTNAC	3 cut(s)	161, 237, 736
MalI	GATC	4 cut(s)	104, 389, 639, 675
MboI	GATC	4 cut(s)	102, 387, 637, 673
MboII	GAAGA	8 cut(s)	59, 103, 149, 152, 397, 406, 433, 602
MflI	RGATCY	1 cut(s)	387
MhlI	GDGCHC	3 cut(s)	232, 471, 588
MluCI	AATT	5 cut(s)	5, 26, 363, 651, 786
MmeI	TCCRAC	1 cut(s)	88
MnlI	CCTC	2 cut(s)	695, 742
MseI	TTAA	7 cut(s)	219, 267, 288, 299, 438, 513, 606
MslI	CAYNNNNRTG	3 cut(s)	200, 515, 714
MwoI	GCNNNNNNNGC	3 cut(s)	654, 770, 789
NcoI	CCATGG	1 cut(s)	482
NdeI	CATATG	1 cut(s)	711
NdeII	GATC	4 cut(s)	102, 387, 637, 673
NlaIII	CATG	5 cut(s)	115, 199, 320, 486, 648
NmuCI	GTSAC	2 cut(s)	161, 736
NspI	RCATGY	3 cut(s)	115, 199, 648
PaqCI	CACCTGC	1 cut(s)	698
PciI	ACATGT	1 cut(s)	195
PfeI	GAWTC	1 cut(s)	631
PflFI	GACNNNGTC	1 cut(s)	665
PkrI	GCNGC	2 cut(s)	695, 763
Ppu21I	YACGTR	1 cut(s)	807
PscI	ACATGT	1 cut(s)	195
Psp124BI	GAGCTC	1 cut(s)	471
PstI	CTGCAG	1 cut(s)	695
PsuI	RGATCY	1 cut(s)	387
PsyI	GACNNNGTC	1 cut(s)	665
RsaI	GTAC	4 cut(s)	54, 275, 381, 805
RsaNI	GTAC	4 cut(s)	53, 274, 380, 804
RseI	CAYNNNNRTG	3 cut(s)	200, 515, 714
SacI	GAGCTC	1 cut(s)	471
SaqAI	TTAA	7 cut(s)	219, 267, 288, 299, 438, 513, 606
SatI	GCNGC	2 cut(s)	694, 762
Sau3AI	GATC	4 cut(s)	102, 387, 637, 673
SduI	GDGCHC	3 cut(s)	232, 471, 588
SfaNI	GCATC	1 cut(s)	740
SfcI	CTRYAG	1 cut(s)	691
SmiMI	CAYNNNNRTG	3 cut(s)	200, 515, 714
SmlI	CTYRAG	3 cut(s)	77, 188, 464
SmoI	CTYRAG	3 cut(s)	77, 188, 464
SnaBI	TACGTA	1 cut(s)	807
Sse9I	AATT	5 cut(s)	5, 26, 363, 651, 786
SstI	GAGCTC	1 cut(s)	471
StyI	CCWWGG	1 cut(s)	482
TaaI	ACNGT	4 cut(s)	98, 146, 597, 667
TaiI	ACGT	2 cut(s)	519, 809
TaqI	TCGA	1 cut(s)	419
TasI	AATT	5 cut(s)	5, 26, 363, 651, 786
TatI	WGTACW	2 cut(s)	273, 379
TfiI	GAWTC	1 cut(s)	631
Tru1I	TTAA	7 cut(s)	219, 267, 288, 299, 438, 513, 606
Tru9I	TTAA	7 cut(s)	219, 267, 288, 299, 438, 513, 606
TscAI	CASTG	3 cut(s)	419, 600, 670
TseFI	GTSAC	2 cut(s)	161, 736
TseI	GCWGC	2 cut(s)	693, 761
Tsp45I	GTSAC	2 cut(s)	161, 736
TspDTI	ATGAA	5 cut(s)	17, 47, 333, 473, 549
TspRI	CASTG	3 cut(s)	419, 600, 670
Tth111I	GACNNNGTC	1 cut(s)	665
VneI	GTGCAC	1 cut(s)	228
XapI	RAATTY	1 cut(s)	5
XceI	RCATGY	3 cut(s)	115, 199, 648
XcmI	CCANNNNNNNNNTGG	1 cut(s)	257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.