E3 ubiquitin-protein ligase
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| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD03G1286600.v1.1 |
| rosa_chinensis | RchiOBHm_Chr2g0112121 |
| rosa_laevigata | RLG00000017953 |
| rosa_multiflora | Rmu_sc0000360.1_g000017 Rmu_sc0001294.1_g000020 |
| rosa_roxburghii | Rroxscaffold_2G00131750 |
| rosa_rugosa | Rorug02G0178500 |
| rosa_samantha | Rh2AG230600 Rh2BG243800 Rh2CG235200 Rh2DG238500 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 698 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 72 |
| Acc36I | ACCTGC | 1 cut(s) | 698 |
| AccII | CGCG | 1 cut(s) | 903 |
| AciI | CCGC | 2 cut(s) | 771, 801 |
| AclWI | GGATC | 2 cut(s) | 382, 668 |
| AcsI | RAATTY | 2 cut(s) | 5, 170 |
| AcuI | CTGAAG | 2 cut(s) | 156, 413 |
| AcyI | GRCGYC | 1 cut(s) | 880 |
| AfaI | GTAC | 2 cut(s) | 54, 275 |
| AgsI | TTSAA | 2 cut(s) | 91, 307 |
| AluBI | AGCT | 4 cut(s) | 469, 628, 767, 835 |
| AluI | AGCT | 4 cut(s) | 469, 628, 767, 835 |
| Alw21I | GWGCWC | 3 cut(s) | 232, 471, 588 |
| Alw26I | GTCTC | 2 cut(s) | 80, 938 |
| Alw44I | GTGCAC | 1 cut(s) | 228 |
| AlwI | GGATC | 2 cut(s) | 382, 668 |
| ApaLI | GTGCAC | 1 cut(s) | 228 |
| ApeKI | GCWGC | 3 cut(s) | 693, 761, 764 |
| ApoI | RAATTY | 2 cut(s) | 5, 170 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 653, 685 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 173 |
| AspLEI | GCGC | 3 cut(s) | 340, 818, 903 |
| AsuHPI | GGTGA | 2 cut(s) | 679, 730 |
| BaeGI | GKGCMC | 1 cut(s) | 232 |
| BanII | GRGCYC | 1 cut(s) | 471 |
| BbsI | GAAGAC | 1 cut(s) | 147 |
| Bbv12I | GWGCWC | 3 cut(s) | 232, 471, 588 |
| BbvI | GCAGC | 3 cut(s) | 705, 748, 776 |
| BceAI | ACGGC | 1 cut(s) | 910 |
| BcoDI | GTCTC | 2 cut(s) | 80, 938 |
| BfaI | CTAG | 1 cut(s) | 976 |
| BfmI | CTRYAG | 2 cut(s) | 691, 762 |
| BfuAI | ACCTGC | 1 cut(s) | 698 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 798 |
| BisI | GCNGC | 3 cut(s) | 694, 762, 765 |
| BlpI | GCTNAGC | 2 cut(s) | 831, 836 |
| BlsI | GCNGC | 3 cut(s) | 695, 763, 766 |
| BmsI | GCATC | 1 cut(s) | 740 |
| BpiI | GAAGAC | 1 cut(s) | 147 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 831, 836 |
| BpuEI | CTTGAG | 3 cut(s) | 62, 173, 485 |
| BsaBI | GATNNNNATC | 1 cut(s) | 18 |
| BsaHI | GRCGYC | 1 cut(s) | 880 |
| BsaJI | CCNNGG | 1 cut(s) | 482 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 453, 483, 804, 834, 922, 952 |
| Bse1I | ACTGG | 3 cut(s) | 56, 155, 677 |
| Bse8I | GATNNNNATC | 1 cut(s) | 18 |
| BseDI | CCNNGG | 1 cut(s) | 482 |
| BseGI | GGATG | 1 cut(s) | 60 |
| BseJI | GATNNNNATC | 1 cut(s) | 18 |
| BseMII | CTCAG | 2 cut(s) | 822, 839 |
| BseNI | ACTGG | 3 cut(s) | 56, 155, 677 |
| BseSI | GKGCMC | 1 cut(s) | 232 |
| BseXI | GCAGC | 3 cut(s) | 705, 748, 776 |
| BsgI | GTGCAG | 1 cut(s) | 842 |
| Bsh1236I | CGCG | 1 cut(s) | 903 |
| BsiHKAI | GWGCWC | 3 cut(s) | 232, 471, 588 |
| BslFI | GGGAC | 1 cut(s) | 765 |
| BsmAI | GTCTC | 2 cut(s) | 80, 938 |
| BsmFI | GGGAC | 1 cut(s) | 765 |
| BsmI | GAATGC | 1 cut(s) | 503 |
| Bsp1286I | GDGCHC | 3 cut(s) | 232, 471, 588 |
| Bsp143I | GATC | 4 cut(s) | 102, 387, 637, 673 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 831, 836 |
| Bsp19I | CCATGG | 1 cut(s) | 482 |
| BspACI | CCGC | 2 cut(s) | 771, 801 |
| BspCNI | CTCAG | 2 cut(s) | 823, 840 |
| BspFNI | CGCG | 1 cut(s) | 903 |
| BspMAI | CTGCAG | 2 cut(s) | 695, 766 |
| BspMI | ACCTGC | 1 cut(s) | 698 |
| BspPI | GGATC | 2 cut(s) | 382, 668 |
| BsrI | ACTGG | 3 cut(s) | 56, 155, 677 |
| BssECI | CCNNGG | 1 cut(s) | 482 |
| BssMI | GATC | 4 cut(s) | 102, 387, 637, 673 |
| BssNI | GRCGYC | 1 cut(s) | 880 |
| BssT1I | CCWWGG | 1 cut(s) | 482 |
| Bst4CI | ACNGT | 4 cut(s) | 98, 146, 597, 667 |
| BstACI | GRCGYC | 1 cut(s) | 880 |
| BstC8I | GCNNGC | 4 cut(s) | 228, 313, 842, 899 |
| BstDEI | CTNAG | 4 cut(s) | 68, 831, 836, 848 |
| BstDSI | CCRYGG | 1 cut(s) | 482 |
| BstF5I | GGATG | 1 cut(s) | 60 |
| BstFNI | CGCG | 1 cut(s) | 903 |
| BstHHI | GCGC | 3 cut(s) | 340, 818, 903 |
| BstKTI | GATC | 4 cut(s) | 105, 390, 640, 676 |
| BstMAI | GTCTC | 2 cut(s) | 80, 938 |
| BstMBI | GATC | 4 cut(s) | 102, 387, 637, 673 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 654, 770, 789, 798, 841 |
| BstNSI | RCATGY | 3 cut(s) | 115, 648, 844 |
| BstSFI | CTRYAG | 2 cut(s) | 691, 762 |
| BstSLI | GKGCMC | 1 cut(s) | 232 |
| BstUI | CGCG | 1 cut(s) | 903 |
| BstV1I | GCAGC | 3 cut(s) | 705, 748, 776 |
| BstV2I | GAAGAC | 1 cut(s) | 147 |
| BstX2I | RGATCY | 1 cut(s) | 387 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 870 |
| BstYI | RGATCY | 1 cut(s) | 387 |
| BtgI | CCRYGG | 1 cut(s) | 482 |
| BtsCI | GGATG | 1 cut(s) | 60 |
| BtsI | GCAGTG | 2 cut(s) | 412, 825 |
| BtsIMutI | CAGTG | 4 cut(s) | 412, 593, 663, 825 |
| BveI | ACCTGC | 1 cut(s) | 698 |
| Cac8I | GCNNGC | 4 cut(s) | 228, 313, 842, 899 |
| CfoI | GCGC | 3 cut(s) | 340, 818, 903 |
| CseI | GACGC | 1 cut(s) | 888 |
| Csp6I | GTAC | 2 cut(s) | 53, 274 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 582, 617 |
| CviAII | CATG | 5 cut(s) | 112, 317, 483, 645, 841 |
| CviQI | GTAC | 2 cut(s) | 53, 274 |
| DdeI | CTNAG | 4 cut(s) | 68, 831, 836, 848 |
| DpnI | GATC | 4 cut(s) | 104, 389, 639, 675 |
| DpnII | GATC | 4 cut(s) | 102, 387, 637, 673 |
| DraI | TTTAAA | 1 cut(s) | 439 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 72 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 72 |
| Ecl136II | GAGCTC | 1 cut(s) | 469 |
| Eco130I | CCWWGG | 1 cut(s) | 482 |
| Eco24I | GRGCYC | 1 cut(s) | 471 |
| Eco32I | GATATC | 1 cut(s) | 20 |
| Eco53kI | GAGCTC | 1 cut(s) | 469 |
| Eco57I | CTGAAG | 2 cut(s) | 156, 413 |
| EcoICRI | GAGCTC | 1 cut(s) | 469 |
| EcoRV | GATATC | 1 cut(s) | 20 |
| EcoT14I | CCWWGG | 1 cut(s) | 482 |
| EcoT38I | GRGCYC | 1 cut(s) | 471 |
| ErhI | CCWWGG | 1 cut(s) | 482 |
| FaeI | CATG | 5 cut(s) | 115, 320, 486, 648, 844 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 867, 899 |
| FaqI | GGGAC | 1 cut(s) | 765 |
| FatI | CATG | 5 cut(s) | 111, 316, 482, 644, 840 |
| FauI | CCCGC | 1 cut(s) | 794 |
| FauNDI | CATATG | 1 cut(s) | 711 |
| Fnu4HI | GCNGC | 3 cut(s) | 694, 762, 765 |
| FokI | GGATG | 1 cut(s) | 47 |
| FriOI | GRGCYC | 1 cut(s) | 471 |
| Fsp4HI | GCNGC | 3 cut(s) | 694, 762, 765 |
| FspBI | CTAG | 1 cut(s) | 976 |
| GlaI | GCGC | 3 cut(s) | 339, 817, 902 |
| GluI | GCNGC | 3 cut(s) | 694, 762, 765 |
| HgaI | GACGC | 1 cut(s) | 888 |
| HhaI | GCGC | 3 cut(s) | 340, 818, 903 |
| Hin1I | GRCGYC | 1 cut(s) | 880 |
| Hin1II | CATG | 5 cut(s) | 115, 320, 486, 648, 844 |
| Hin6I | GCGC | 3 cut(s) | 338, 816, 901 |
| HinP1I | GCGC | 3 cut(s) | 338, 816, 901 |
| HincII | GTYRAC | 2 cut(s) | 559, 607 |
| HindII | GTYRAC | 2 cut(s) | 559, 607 |
| HinfI | GANTC | 4 cut(s) | 631, 850, 905, 931 |
| HpaI | GTTAAC | 1 cut(s) | 607 |
| HphI | GGTGA | 2 cut(s) | 679, 730 |
| Hpy166II | GTNNAC | 5 cut(s) | 211, 230, 412, 559, 607 |
| Hpy188I | TCNGA | 2 cut(s) | 65, 888 |
| Hpy188III | TCNNGA | 3 cut(s) | 391, 635, 952 |
| Hpy8I | GTNNAC | 5 cut(s) | 211, 230, 412, 559, 607 |
| HpyAV | CCTTC | 3 cut(s) | 189, 620, 893 |
| HpyCH4III | ACNGT | 4 cut(s) | 98, 146, 597, 667 |
| HpyCH4IV | ACGT | 2 cut(s) | 283, 516 |
| HpyCH4V | TGCA | 6 cut(s) | 115, 230, 693, 731, 764, 823 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 654, 770, 789, 798, 841 |
| HpyF3I | CTNAG | 4 cut(s) | 68, 831, 836, 848 |
| HpySE526I | ACGT | 2 cut(s) | 283, 516 |
| Hsp92I | GRCGYC | 1 cut(s) | 880 |
| Hsp92II | CATG | 5 cut(s) | 115, 320, 486, 648, 844 |
| HspAI | GCGC | 3 cut(s) | 338, 816, 901 |
| KspAI | GTTAAC | 1 cut(s) | 607 |
| Kzo9I | GATC | 4 cut(s) | 102, 387, 637, 673 |
| LmnI | GCTCC | 1 cut(s) | 474 |
| LpnPI | CCDG | 9 cut(s) | 69, 151, 168, 218, 246, 404, 690, 703, 937 |
| Lsp1109I | GCAGC | 3 cut(s) | 705, 748, 776 |
| LweI | GCATC | 1 cut(s) | 740 |
| MaeI | CTAG | 1 cut(s) | 976 |
| MaeII | ACGT | 2 cut(s) | 283, 516 |
| MaeIII | GTNAC | 4 cut(s) | 161, 237, 736, 968 |
| MalI | GATC | 4 cut(s) | 104, 389, 639, 675 |
| MboI | GATC | 4 cut(s) | 102, 387, 637, 673 |
| MboII | GAAGA | 7 cut(s) | 59, 103, 149, 152, 397, 406, 433 |
| MflI | RGATCY | 1 cut(s) | 387 |
| MhlI | GDGCHC | 3 cut(s) | 232, 471, 588 |
| MluCI | AATT | 7 cut(s) | 5, 26, 170, 363, 546, 651, 786 |
| MlyI | GAGTC | 2 cut(s) | 859, 940 |
| MmeI | TCCRAC | 1 cut(s) | 88 |
| MnlI | CCTC | 4 cut(s) | 695, 742, 806, 882 |
| MroXI | GAANNNNTTC | 1 cut(s) | 173 |
| MseI | TTAA | 7 cut(s) | 219, 267, 288, 299, 438, 513, 606 |
| MslI | CAYNNNNRTG | 3 cut(s) | 515, 576, 714 |
| Mva1269I | GAATGC | 1 cut(s) | 503 |
| MvnI | CGCG | 1 cut(s) | 903 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 654, 770, 789, 798, 841 |
| NcoI | CCATGG | 1 cut(s) | 482 |
| NdeI | CATATG | 1 cut(s) | 711 |
| NdeII | GATC | 4 cut(s) | 102, 387, 637, 673 |
| NlaIII | CATG | 5 cut(s) | 115, 320, 486, 648, 844 |
| NmuCI | GTSAC | 3 cut(s) | 161, 736, 968 |
| NspI | RCATGY | 3 cut(s) | 115, 648, 844 |
| PaeI | GCATGC | 1 cut(s) | 844 |
| PaqCI | CACCTGC | 1 cut(s) | 698 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 900 |
| PctI | GAATGC | 1 cut(s) | 503 |
| PdmI | GAANNNNTTC | 1 cut(s) | 173 |
| PfeI | GAWTC | 2 cut(s) | 631, 905 |
| PflFI | GACNNNGTC | 1 cut(s) | 665 |
| PkrI | GCNGC | 3 cut(s) | 695, 763, 766 |
| PleI | GAGTC | 2 cut(s) | 858, 939 |
| PpsI | GAGTC | 2 cut(s) | 858, 939 |
| Psp124BI | GAGCTC | 1 cut(s) | 471 |
| PstI | CTGCAG | 2 cut(s) | 695, 766 |
| PsuI | RGATCY | 1 cut(s) | 387 |
| PsyI | GACNNNGTC | 1 cut(s) | 665 |
| RsaI | GTAC | 2 cut(s) | 54, 275 |
| RsaNI | GTAC | 2 cut(s) | 53, 274 |
| RseI | CAYNNNNRTG | 3 cut(s) | 515, 576, 714 |
| SacI | GAGCTC | 1 cut(s) | 471 |
| SaqAI | TTAA | 7 cut(s) | 219, 267, 288, 299, 438, 513, 606 |
| SatI | GCNGC | 3 cut(s) | 694, 762, 765 |
| Sau3AI | GATC | 4 cut(s) | 102, 387, 637, 673 |
| SchI | GAGTC | 2 cut(s) | 859, 940 |
| SduI | GDGCHC | 3 cut(s) | 232, 471, 588 |
| SfaNI | GCATC | 1 cut(s) | 740 |
| SfcI | CTRYAG | 2 cut(s) | 691, 762 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 515, 576, 714 |
| SmlI | CTYRAG | 3 cut(s) | 77, 188, 464 |
| SmoI | CTYRAG | 3 cut(s) | 77, 188, 464 |
| SphI | GCATGC | 1 cut(s) | 844 |
| Sse9I | AATT | 7 cut(s) | 5, 26, 170, 363, 546, 651, 786 |
| SsiI | CCGC | 2 cut(s) | 771, 801 |
| SspMI | CTAG | 1 cut(s) | 976 |
| SstI | GAGCTC | 1 cut(s) | 471 |
| StyI | CCWWGG | 1 cut(s) | 482 |
| TaaI | ACNGT | 4 cut(s) | 98, 146, 597, 667 |
| TaiI | ACGT | 2 cut(s) | 286, 519 |
| TaqI | TCGA | 2 cut(s) | 419, 853 |
| TasI | AATT | 7 cut(s) | 5, 26, 170, 363, 546, 651, 786 |
| TatI | WGTACW | 1 cut(s) | 273 |
| TfiI | GAWTC | 2 cut(s) | 631, 905 |
| Tru1I | TTAA | 7 cut(s) | 219, 267, 288, 299, 438, 513, 606 |
| Tru9I | TTAA | 7 cut(s) | 219, 267, 288, 299, 438, 513, 606 |
| TscAI | CASTG | 4 cut(s) | 419, 600, 670, 825 |
| TseFI | GTSAC | 3 cut(s) | 161, 736, 968 |
| TseI | GCWGC | 3 cut(s) | 693, 761, 764 |
| Tsp45I | GTSAC | 3 cut(s) | 161, 736, 968 |
| TspDTI | ATGAA | 7 cut(s) | 17, 47, 333, 473, 549, 935, 978 |
| TspRI | CASTG | 4 cut(s) | 419, 600, 670, 825 |
| Tth111I | GACNNNGTC | 1 cut(s) | 665 |
| VneI | GTGCAC | 1 cut(s) | 228 |
| XapI | RAATTY | 2 cut(s) | 5, 170 |
| XceI | RCATGY | 3 cut(s) | 115, 648, 844 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 257 |
| XmnI | GAANNNNTTC | 1 cut(s) | 173 |
| XspI | CTAG | 1 cut(s) | 976 |