Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000360.1

Orthogroup ID

OG0018104

Physical Location & Seq

Genomic Coordinates Reverse (-)

66469 .. 67660

Gene Structure 1192 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000360.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

atgaaacttgagctcctaaaatccccatggcttttggaactaatggcattccacattaacgtgagtaaaaacagagatgacagcaagacgatttggtttgttgacttctcgcttcacaaagatgatgagaacagaccactgtttttggttaaccttccccactcaatagagctgaatcttgatctaacatgcccaatttgcttggacactgtctttgatccggttttcctcacctgcagccatatactctgccatatgtgtgcttgttcggttgcatcagtcaccattgttgagggactacgggctgcaacttctgcaaagaaatgcccaatttgccgaaagggtggggtatttggaggcgcagtgcagttggctgagctaagcatgctactgagtcgaagtatgccaaagtattggaaaggacgccttcagagggaacggcaagagcgaatcaaacaagcaaaggagttctgggagtctgagtgtcgttcatttctggaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006082 GO:0006464 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0008219 GO:0009056 GO:0009057 GO:0009058 GO:0009605 GO:0009607 GO:0009617 GO:0009626 GO:0009627 GO:0009696 GO:0009697 GO:0009719 GO:0009725 GO:0009751 GO:0009814 GO:0009987 GO:0010033 GO:0010035 GO:0010167 GO:0010337 GO:0010498 GO:0010565 GO:0010817 GO:0012501 GO:0014070 GO:0016020 GO:0016053 GO:0016567 GO:0016740 GO:0016999 GO:0017000 GO:0017144 GO:0018958 GO:0019222 GO:0019438 GO:0019538 GO:0019752 GO:0019787 GO:0019941 GO:0030163 GO:0031323 GO:0032350 GO:0032446 GO:0032787 GO:0033554 GO:0034050 GO:0036211 GO:0042221 GO:0042445 GO:0042446 GO:0042493 GO:0042537 GO:0042742 GO:0043161 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0045087 GO:0046189 GO:0046394 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0051716 GO:0061630 GO:0061659 GO:0062012 GO:0065007 GO:0065008 GO:0070647 GO:0071704 GO:0071944 GO:0072330 GO:0080021 GO:0098542 GO:0140096 GO:1901360 GO:1901362 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1901615 GO:1901617 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4 zf-C3HC4_3 zf-RING_UBOX

Protein Analysis

167

Amino Acids

19.16

Weight (kDa)

8.08

Isoelectric Point (pI)

53.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018104)

Species	Orthologous Gene IDs
malus_domestica	MD03G1286600.v1.1
rosa_chinensis	RchiOBHm_Chr2g0112121
rosa_laevigata	RLG00000017953
rosa_multiflora	Rmu_sc0000360.1_g000017 Rmu_sc0001294.1_g000020
rosa_roxburghii	Rroxscaffold_2G00131750
rosa_rugosa	Rorug02G0178500
rosa_samantha	Rh2AG230600 Rh2BG243800 Rh2CG235200 Rh2DG238500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	242
Acc36I	ACCTGC	1 cut(s)	242
AclWI	GGATC	1 cut(s)	212
AcuI	CTGAAG	1 cut(s)	413
AcyI	GRCGYC	1 cut(s)	424
AfiI	CCNNNNNNNGG	1 cut(s)	433
AluBI	AGCT	3 cut(s)	13, 172, 379
AluI	AGCT	3 cut(s)	13, 172, 379
Alw21I	GWGCWC	1 cut(s)	15
AlwI	GGATC	1 cut(s)	212
ApeKI	GCWGC	2 cut(s)	237, 305
ArsI	GACNNNNNNTTYG	2 cut(s)	197, 229
AspLEI	GCGC	1 cut(s)	362
AsuHPI	GGTGA	2 cut(s)	223, 274
BanII	GRGCYC	1 cut(s)	15
Bbv12I	GWGCWC	1 cut(s)	15
BbvI	GCAGC	2 cut(s)	249, 292
BceAI	ACGGC	1 cut(s)	455
BfmI	CTRYAG	1 cut(s)	235
BfuAI	ACCTGC	1 cut(s)	242
BisI	GCNGC	2 cut(s)	238, 306
BlpI	GCTNAGC	2 cut(s)	375, 380
BlsI	GCNGC	2 cut(s)	239, 307
BmsI	GCATC	1 cut(s)	284
Bpu1102I	GCTNAGC	2 cut(s)	375, 380
BpuEI	CTTGAG	1 cut(s)	29
BsaHI	GRCGYC	1 cut(s)	424
BsaJI	CCNNGG	1 cut(s)	26
BsaWI	WCCGGW	1 cut(s)	220
BsaXI	ACNNNNNCTCC	5 cut(s)	27, 348, 378, 467, 497
Bsc4I	CCNNNNNNNGG	1 cut(s)	433
BseDI	CCNNGG	1 cut(s)	26
BseLI	CCNNNNNNNGG	1 cut(s)	433
BseMII	CTCAG	3 cut(s)	366, 383, 471
BseXI	GCAGC	2 cut(s)	249, 292
BsgI	GTGCAG	1 cut(s)	386
BsiHKAI	GWGCWC	1 cut(s)	15
BsiSI	CCGG	1 cut(s)	221
BslFI	GGGAC	1 cut(s)	309
BslI	CCNNNNNNNGG	1 cut(s)	433
BsmFI	GGGAC	1 cut(s)	309
BsmI	GAATGC	1 cut(s)	47
Bsp1286I	GDGCHC	1 cut(s)	15
Bsp143I	GATC	2 cut(s)	181, 217
Bsp1720I	GCTNAGC	2 cut(s)	375, 380
Bsp19I	CCATGG	1 cut(s)	26
BspCNI	CTCAG	3 cut(s)	367, 384, 472
BspMAI	CTGCAG	1 cut(s)	239
BspMI	ACCTGC	1 cut(s)	242
BspPI	GGATC	1 cut(s)	212
BssECI	CCNNGG	1 cut(s)	26
BssMI	GATC	2 cut(s)	181, 217
BssNI	GRCGYC	1 cut(s)	424
BssT1I	CCWWGG	1 cut(s)	26
Bst4CI	ACNGT	2 cut(s)	141, 211
BstACI	GRCGYC	1 cut(s)	424
BstAPI	GCANNNNNTGC	1 cut(s)	314
BstC8I	GCNNGC	1 cut(s)	386
BstDEI	CTNAG	4 cut(s)	375, 380, 392, 480
BstDSI	CCRYGG	1 cut(s)	26
BstHHI	GCGC	1 cut(s)	362
BstKTI	GATC	2 cut(s)	184, 220
BstMBI	GATC	2 cut(s)	181, 217
BstMWI	GCNNNNNNNGC	4 cut(s)	198, 314, 333, 385
BstNSI	RCATGY	2 cut(s)	192, 388
BstSFI	CTRYAG	1 cut(s)	235
BstV1I	GCAGC	2 cut(s)	249, 292
BstXI	CCANNNNNNTGG	1 cut(s)	414
BtgI	CCRYGG	1 cut(s)	26
BtsI	GCAGTG	1 cut(s)	369
BtsIMutI	CAGTG	3 cut(s)	137, 207, 369
BveI	ACCTGC	1 cut(s)	242
Cac8I	GCNNGC	1 cut(s)	386
CfoI	GCGC	1 cut(s)	362
CseI	GACGC	1 cut(s)	432
CspCI	CAANNNNNGTGG	2 cut(s)	126, 161
CviAII	CATG	3 cut(s)	27, 189, 385
CviJI	RGCY	7 cut(s)	13, 31, 172, 240, 305, 374, 379
CviKI_1	RGCY	7 cut(s)	13, 31, 172, 240, 305, 374, 379
DdeI	CTNAG	4 cut(s)	375, 380, 392, 480
DpnI	GATC	2 cut(s)	183, 219
DpnII	GATC	2 cut(s)	181, 217
Ecl136II	GAGCTC	1 cut(s)	13
Eco130I	CCWWGG	1 cut(s)	26
Eco24I	GRGCYC	1 cut(s)	15
Eco53kI	GAGCTC	1 cut(s)	13
Eco57I	CTGAAG	1 cut(s)	413
EcoICRI	GAGCTC	1 cut(s)	13
EcoT14I	CCWWGG	1 cut(s)	26
EcoT38I	GRGCYC	1 cut(s)	15
ErhI	CCWWGG	1 cut(s)	26
FaeI	CATG	3 cut(s)	30, 192, 388
FaiI	YATR	8 cut(s)	28, 190, 243, 245, 255, 257, 386, 404
FalI	AAGNNNNNCTT	2 cut(s)	411, 443
FaqI	GGGAC	1 cut(s)	309
FatI	CATG	3 cut(s)	26, 188, 384
FauNDI	CATATG	1 cut(s)	255
Fnu4HI	GCNGC	2 cut(s)	238, 306
FriOI	GRGCYC	1 cut(s)	15
Fsp4HI	GCNGC	2 cut(s)	238, 306
GlaI	GCGC	1 cut(s)	361
GluI	GCNGC	2 cut(s)	238, 306
HapII	CCGG	1 cut(s)	221
HgaI	GACGC	1 cut(s)	432
HhaI	GCGC	1 cut(s)	362
Hin1I	GRCGYC	1 cut(s)	424
Hin1II	CATG	3 cut(s)	30, 192, 388
Hin6I	GCGC	1 cut(s)	360
HinP1I	GCGC	1 cut(s)	360
HincII	GTYRAC	2 cut(s)	103, 151
HindII	GTYRAC	2 cut(s)	103, 151
HinfI	GANTC	4 cut(s)	175, 394, 450, 476
HpaI	GTTAAC	1 cut(s)	151
HpaII	CCGG	1 cut(s)	221
HphI	GGTGA	2 cut(s)	223, 274
Hpy166II	GTNNAC	2 cut(s)	103, 151
Hpy188I	TCNGA	2 cut(s)	432, 481
Hpy188III	TCNNGA	2 cut(s)	179, 497
Hpy8I	GTNNAC	2 cut(s)	103, 151
HpyAV	CCTTC	2 cut(s)	164, 437
HpyCH4III	ACNGT	2 cut(s)	141, 211
HpyCH4IV	ACGT	1 cut(s)	60
HpyCH4V	TGCA	5 cut(s)	237, 275, 308, 317, 367
HpyF10VI	GCNNNNNNNGC	4 cut(s)	198, 314, 333, 385
HpyF3I	CTNAG	4 cut(s)	375, 380, 392, 480
HpySE526I	ACGT	1 cut(s)	60
Hsp92I	GRCGYC	1 cut(s)	424
Hsp92II	CATG	3 cut(s)	30, 192, 388
HspAI	GCGC	1 cut(s)	360
KspAI	GTTAAC	1 cut(s)	151
Kzo9I	GATC	2 cut(s)	181, 217
LmnI	GCTCC	1 cut(s)	18
LpnPI	CCDG	4 cut(s)	234, 247, 457, 482
Lsp1109I	GCAGC	2 cut(s)	249, 292
LweI	GCATC	1 cut(s)	284
MaeII	ACGT	1 cut(s)	60
MaeIII	GTNAC	1 cut(s)	280
MalI	GATC	2 cut(s)	183, 219
MboI	GATC	2 cut(s)	181, 217
MhlI	GDGCHC	1 cut(s)	15
MluCI	AATT	2 cut(s)	195, 330
MlyI	GAGTC	2 cut(s)	403, 485
MnlI	CCTC	4 cut(s)	239, 286, 350, 426
MseI	TTAA	2 cut(s)	57, 150
MslI	CAYNNNNRTG	3 cut(s)	59, 120, 258
MspI	CCGG	1 cut(s)	221
Mva1269I	GAATGC	1 cut(s)	47
MwoI	GCNNNNNNNGC	4 cut(s)	198, 314, 333, 385
NcoI	CCATGG	1 cut(s)	26
NdeI	CATATG	1 cut(s)	255
NdeII	GATC	2 cut(s)	181, 217
NlaIII	CATG	3 cut(s)	30, 192, 388
NmuCI	GTSAC	1 cut(s)	280
NspI	RCATGY	2 cut(s)	192, 388
PaeI	GCATGC	1 cut(s)	388
PaqCI	CACCTGC	1 cut(s)	242
PcsI	WCGNNNNNNNCGW	1 cut(s)	445
PctI	GAATGC	1 cut(s)	47
PfeI	GAWTC	2 cut(s)	175, 450
PflFI	GACNNNGTC	1 cut(s)	209
PkrI	GCNGC	2 cut(s)	239, 307
PleI	GAGTC	2 cut(s)	402, 484
PpsI	GAGTC	2 cut(s)	402, 484
Psp124BI	GAGCTC	1 cut(s)	15
PstI	CTGCAG	1 cut(s)	239
PsyI	GACNNNGTC	1 cut(s)	209
RseI	CAYNNNNRTG	3 cut(s)	59, 120, 258
SacI	GAGCTC	1 cut(s)	15
SaqAI	TTAA	2 cut(s)	57, 150
SatI	GCNGC	2 cut(s)	238, 306
Sau3AI	GATC	2 cut(s)	181, 217
SchI	GAGTC	2 cut(s)	403, 485
SduI	GDGCHC	1 cut(s)	15
SetI	ASST	6 cut(s)	15, 63, 156, 174, 236, 381
SfaNI	GCATC	1 cut(s)	284
SfcI	CTRYAG	1 cut(s)	235
SmiMI	CAYNNNNRTG	3 cut(s)	59, 120, 258
SmlI	CTYRAG	1 cut(s)	8
SmoI	CTYRAG	1 cut(s)	8
SphI	GCATGC	1 cut(s)	388
Sse9I	AATT	2 cut(s)	195, 330
SstI	GAGCTC	1 cut(s)	15
StyI	CCWWGG	1 cut(s)	26
TaaI	ACNGT	2 cut(s)	141, 211
TaiI	ACGT	1 cut(s)	63
TaqI	TCGA	1 cut(s)	397
TasI	AATT	2 cut(s)	195, 330
TfiI	GAWTC	2 cut(s)	175, 450
Tru1I	TTAA	2 cut(s)	57, 150
Tru9I	TTAA	2 cut(s)	57, 150
TscAI	CASTG	3 cut(s)	144, 214, 369
TseFI	GTSAC	1 cut(s)	280
TseI	GCWGC	2 cut(s)	237, 305
Tsp45I	GTSAC	1 cut(s)	280
TspDTI	ATGAA	2 cut(s)	17, 480
TspRI	CASTG	3 cut(s)	144, 214, 369
Tth111I	GACNNNGTC	1 cut(s)	209
XceI	RCATGY	2 cut(s)	192, 388

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.