E3 ubiquitin-protein ligase
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD03G1286600.v1.1 |
| rosa_chinensis | RchiOBHm_Chr2g0112121 |
| rosa_laevigata | RLG00000017953 |
| rosa_multiflora | Rmu_sc0000360.1_g000017 Rmu_sc0001294.1_g000020 |
| rosa_roxburghii | Rroxscaffold_2G00131750 |
| rosa_rugosa | Rorug02G0178500 |
| rosa_samantha | Rh2AG230600 Rh2BG243800 Rh2CG235200 Rh2DG238500 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 695 |
| Acc36I | ACCTGC | 1 cut(s) | 695 |
| AciI | CCGC | 1 cut(s) | 768 |
| AclWI | GGATC | 2 cut(s) | 379, 665 |
| AcsI | RAATTY | 1 cut(s) | 5 |
| AcuI | CTGAAG | 2 cut(s) | 153, 410 |
| AfaI | GTAC | 4 cut(s) | 51, 272, 279, 802 |
| AflIII | ACRYGT | 1 cut(s) | 192 |
| AgsI | TTSAA | 2 cut(s) | 88, 304 |
| AluBI | AGCT | 4 cut(s) | 446, 466, 625, 764 |
| AluI | AGCT | 4 cut(s) | 446, 466, 625, 764 |
| Alw21I | GWGCWC | 3 cut(s) | 229, 468, 585 |
| Alw44I | GTGCAC | 1 cut(s) | 225 |
| AlwI | GGATC | 2 cut(s) | 379, 665 |
| ApaLI | GTGCAC | 1 cut(s) | 225 |
| ApeKI | GCWGC | 3 cut(s) | 690, 758, 761 |
| ApoI | RAATTY | 1 cut(s) | 5 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 650, 682 |
| AspLEI | GCGC | 1 cut(s) | 337 |
| AsuHPI | GGTGA | 2 cut(s) | 676, 727 |
| BaeGI | GKGCMC | 1 cut(s) | 229 |
| BanII | GRGCYC | 1 cut(s) | 468 |
| BbsI | GAAGAC | 1 cut(s) | 144 |
| Bbv12I | GWGCWC | 3 cut(s) | 229, 468, 585 |
| BbvI | GCAGC | 3 cut(s) | 702, 745, 773 |
| BfaI | CTAG | 2 cut(s) | 65, 239 |
| BfmI | CTRYAG | 2 cut(s) | 688, 759 |
| BfuAI | ACCTGC | 1 cut(s) | 695 |
| BisI | GCNGC | 3 cut(s) | 691, 759, 762 |
| BlsI | GCNGC | 3 cut(s) | 692, 760, 763 |
| BmsI | GCATC | 1 cut(s) | 737 |
| BpiI | GAAGAC | 1 cut(s) | 144 |
| BpuEI | CTTGAG | 3 cut(s) | 59, 170, 482 |
| BsaAI | YACGTR | 1 cut(s) | 804 |
| BsaBI | GATNNNNATC | 1 cut(s) | 18 |
| BsaJI | CCNNGG | 1 cut(s) | 479 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 450, 480 |
| Bse1I | ACTGG | 3 cut(s) | 53, 152, 674 |
| Bse8I | GATNNNNATC | 1 cut(s) | 18 |
| BseDI | CCNNGG | 1 cut(s) | 479 |
| BseGI | GGATG | 1 cut(s) | 57 |
| BseJI | GATNNNNATC | 1 cut(s) | 18 |
| BseNI | ACTGG | 3 cut(s) | 53, 152, 674 |
| BseSI | GKGCMC | 1 cut(s) | 229 |
| BseXI | GCAGC | 3 cut(s) | 702, 745, 773 |
| BsiHKAI | GWGCWC | 3 cut(s) | 229, 468, 585 |
| BslFI | GGGAC | 2 cut(s) | 438, 762 |
| BsmFI | GGGAC | 2 cut(s) | 438, 762 |
| BsmI | GAATGC | 1 cut(s) | 500 |
| Bsp1286I | GDGCHC | 3 cut(s) | 229, 468, 585 |
| Bsp143I | GATC | 4 cut(s) | 99, 384, 634, 670 |
| Bsp19I | CCATGG | 1 cut(s) | 479 |
| BspACI | CCGC | 1 cut(s) | 768 |
| BspMAI | CTGCAG | 2 cut(s) | 692, 763 |
| BspMI | ACCTGC | 1 cut(s) | 695 |
| BspPI | GGATC | 2 cut(s) | 379, 665 |
| BspQI | GCTCTTC | 1 cut(s) | 573 |
| BsrI | ACTGG | 3 cut(s) | 53, 152, 674 |
| BssECI | CCNNGG | 1 cut(s) | 479 |
| BssMI | GATC | 4 cut(s) | 99, 384, 634, 670 |
| BssT1I | CCWWGG | 1 cut(s) | 479 |
| Bst4CI | ACNGT | 4 cut(s) | 95, 143, 594, 664 |
| Bst6I | CTCTTC | 1 cut(s) | 573 |
| BstBAI | YACGTR | 1 cut(s) | 804 |
| BstC8I | GCNNGC | 2 cut(s) | 225, 310 |
| BstDSI | CCRYGG | 1 cut(s) | 479 |
| BstF5I | GGATG | 1 cut(s) | 57 |
| BstHHI | GCGC | 1 cut(s) | 337 |
| BstKTI | GATC | 4 cut(s) | 102, 387, 637, 673 |
| BstMBI | GATC | 4 cut(s) | 99, 384, 634, 670 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 651, 767, 786 |
| BstNSI | RCATGY | 3 cut(s) | 112, 196, 645 |
| BstSFI | CTRYAG | 2 cut(s) | 688, 759 |
| BstSLI | GKGCMC | 1 cut(s) | 229 |
| BstSNI | TACGTA | 1 cut(s) | 804 |
| BstV1I | GCAGC | 3 cut(s) | 702, 745, 773 |
| BstV2I | GAAGAC | 1 cut(s) | 144 |
| BstX2I | RGATCY | 1 cut(s) | 384 |
| BstYI | RGATCY | 1 cut(s) | 384 |
| BtgI | CCRYGG | 1 cut(s) | 479 |
| BtsCI | GGATG | 1 cut(s) | 57 |
| BtsI | GCAGTG | 1 cut(s) | 409 |
| BtsIMutI | CAGTG | 3 cut(s) | 409, 590, 660 |
| BveI | ACCTGC | 1 cut(s) | 695 |
| Cac8I | GCNNGC | 2 cut(s) | 225, 310 |
| CfoI | GCGC | 1 cut(s) | 337 |
| Csp6I | GTAC | 4 cut(s) | 50, 271, 278, 801 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 579, 614 |
| CviAII | CATG | 5 cut(s) | 109, 193, 314, 480, 642 |
| CviQI | GTAC | 4 cut(s) | 50, 271, 278, 801 |
| DpnI | GATC | 4 cut(s) | 101, 386, 636, 672 |
| DpnII | GATC | 4 cut(s) | 99, 384, 634, 670 |
| DraI | TTTAAA | 1 cut(s) | 436 |
| Eam1104I | CTCTTC | 1 cut(s) | 573 |
| EarI | CTCTTC | 1 cut(s) | 573 |
| Ecl136II | GAGCTC | 1 cut(s) | 466 |
| Eco105I | TACGTA | 1 cut(s) | 804 |
| Eco130I | CCWWGG | 1 cut(s) | 479 |
| Eco24I | GRGCYC | 1 cut(s) | 468 |
| Eco32I | GATATC | 1 cut(s) | 20 |
| Eco53kI | GAGCTC | 1 cut(s) | 466 |
| Eco57I | CTGAAG | 2 cut(s) | 153, 410 |
| EcoICRI | GAGCTC | 1 cut(s) | 466 |
| EcoRV | GATATC | 1 cut(s) | 20 |
| EcoT14I | CCWWGG | 1 cut(s) | 479 |
| EcoT38I | GRGCYC | 1 cut(s) | 468 |
| ErhI | CCWWGG | 1 cut(s) | 479 |
| FaeI | CATG | 5 cut(s) | 112, 196, 317, 483, 645 |
| FaqI | GGGAC | 2 cut(s) | 438, 762 |
| FatI | CATG | 5 cut(s) | 108, 192, 313, 479, 641 |
| FauNDI | CATATG | 1 cut(s) | 708 |
| Fnu4HI | GCNGC | 3 cut(s) | 691, 759, 762 |
| FokI | GGATG | 1 cut(s) | 44 |
| FriOI | GRGCYC | 1 cut(s) | 468 |
| Fsp4HI | GCNGC | 3 cut(s) | 691, 759, 762 |
| FspBI | CTAG | 2 cut(s) | 65, 239 |
| GlaI | GCGC | 1 cut(s) | 336 |
| GluI | GCNGC | 3 cut(s) | 691, 759, 762 |
| HhaI | GCGC | 1 cut(s) | 337 |
| Hin1II | CATG | 5 cut(s) | 112, 196, 317, 483, 645 |
| Hin6I | GCGC | 1 cut(s) | 335 |
| HinP1I | GCGC | 1 cut(s) | 335 |
| HincII | GTYRAC | 2 cut(s) | 556, 604 |
| HindII | GTYRAC | 2 cut(s) | 556, 604 |
| HinfI | GANTC | 2 cut(s) | 242, 628 |
| HpaI | GTTAAC | 1 cut(s) | 604 |
| HphI | GGTGA | 2 cut(s) | 676, 727 |
| Hpy166II | GTNNAC | 5 cut(s) | 208, 227, 409, 556, 604 |
| Hpy188I | TCNGA | 1 cut(s) | 62 |
| Hpy188III | TCNNGA | 2 cut(s) | 388, 632 |
| Hpy8I | GTNNAC | 5 cut(s) | 208, 227, 409, 556, 604 |
| HpyAV | CCTTC | 3 cut(s) | 186, 415, 617 |
| HpyCH4III | ACNGT | 4 cut(s) | 95, 143, 594, 664 |
| HpyCH4IV | ACGT | 3 cut(s) | 280, 513, 803 |
| HpyCH4V | TGCA | 5 cut(s) | 112, 227, 690, 728, 761 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 651, 767, 786 |
| HpySE526I | ACGT | 3 cut(s) | 280, 513, 803 |
| Hsp92II | CATG | 5 cut(s) | 112, 196, 317, 483, 645 |
| HspAI | GCGC | 1 cut(s) | 335 |
| KspAI | GTTAAC | 1 cut(s) | 604 |
| Kzo9I | GATC | 4 cut(s) | 99, 384, 634, 670 |
| LguI | GCTCTTC | 1 cut(s) | 573 |
| LmnI | GCTCC | 1 cut(s) | 471 |
| LpnPI | CCDG | 8 cut(s) | 66, 148, 165, 215, 243, 401, 687, 700 |
| Lsp1109I | GCAGC | 3 cut(s) | 702, 745, 773 |
| LweI | GCATC | 1 cut(s) | 737 |
| MaeI | CTAG | 2 cut(s) | 65, 239 |
| MaeII | ACGT | 3 cut(s) | 280, 513, 803 |
| MaeIII | GTNAC | 3 cut(s) | 158, 234, 733 |
| MalI | GATC | 4 cut(s) | 101, 386, 636, 672 |
| MboI | GATC | 4 cut(s) | 99, 384, 634, 670 |
| MboII | GAAGA | 6 cut(s) | 146, 149, 394, 403, 430, 590 |
| MflI | RGATCY | 1 cut(s) | 384 |
| MhlI | GDGCHC | 3 cut(s) | 229, 468, 585 |
| MluCI | AATT | 6 cut(s) | 5, 26, 360, 543, 648, 783 |
| MlyI | GAGTC | 1 cut(s) | 236 |
| MmeI | TCCRAC | 1 cut(s) | 85 |
| MnlI | CCTC | 2 cut(s) | 692, 739 |
| MseI | TTAA | 7 cut(s) | 216, 264, 285, 296, 435, 510, 603 |
| MslI | CAYNNNNRTG | 4 cut(s) | 197, 512, 573, 711 |
| Mva1269I | GAATGC | 1 cut(s) | 500 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 651, 767, 786 |
| NcoI | CCATGG | 1 cut(s) | 479 |
| NdeI | CATATG | 1 cut(s) | 708 |
| NdeII | GATC | 4 cut(s) | 99, 384, 634, 670 |
| NlaIII | CATG | 5 cut(s) | 112, 196, 317, 483, 645 |
| NmuCI | GTSAC | 2 cut(s) | 158, 733 |
| NspI | RCATGY | 3 cut(s) | 112, 196, 645 |
| PaqCI | CACCTGC | 1 cut(s) | 695 |
| PciI | ACATGT | 1 cut(s) | 192 |
| PciSI | GCTCTTC | 1 cut(s) | 573 |
| PctI | GAATGC | 1 cut(s) | 500 |
| PfeI | GAWTC | 1 cut(s) | 628 |
| PflFI | GACNNNGTC | 1 cut(s) | 662 |
| PkrI | GCNGC | 3 cut(s) | 692, 760, 763 |
| PleI | GAGTC | 1 cut(s) | 236 |
| PpsI | GAGTC | 1 cut(s) | 236 |
| Ppu21I | YACGTR | 1 cut(s) | 804 |
| PscI | ACATGT | 1 cut(s) | 192 |
| Psp124BI | GAGCTC | 1 cut(s) | 468 |
| PstI | CTGCAG | 2 cut(s) | 692, 763 |
| PsuI | RGATCY | 1 cut(s) | 384 |
| PsyI | GACNNNGTC | 1 cut(s) | 662 |
| RsaI | GTAC | 4 cut(s) | 51, 272, 279, 802 |
| RsaNI | GTAC | 4 cut(s) | 50, 271, 278, 801 |
| RseI | CAYNNNNRTG | 4 cut(s) | 197, 512, 573, 711 |
| SacI | GAGCTC | 1 cut(s) | 468 |
| SapI | GCTCTTC | 1 cut(s) | 573 |
| SaqAI | TTAA | 7 cut(s) | 216, 264, 285, 296, 435, 510, 603 |
| SatI | GCNGC | 3 cut(s) | 691, 759, 762 |
| Sau3AI | GATC | 4 cut(s) | 99, 384, 634, 670 |
| SchI | GAGTC | 1 cut(s) | 236 |
| SduI | GDGCHC | 3 cut(s) | 229, 468, 585 |
| SfaNI | GCATC | 1 cut(s) | 737 |
| SfcI | CTRYAG | 2 cut(s) | 688, 759 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 197, 512, 573, 711 |
| SmlI | CTYRAG | 3 cut(s) | 74, 185, 461 |
| SmoI | CTYRAG | 3 cut(s) | 74, 185, 461 |
| SnaBI | TACGTA | 1 cut(s) | 804 |
| Sse9I | AATT | 6 cut(s) | 5, 26, 360, 543, 648, 783 |
| SsiI | CCGC | 1 cut(s) | 768 |
| SspMI | CTAG | 2 cut(s) | 65, 239 |
| SstI | GAGCTC | 1 cut(s) | 468 |
| StyI | CCWWGG | 1 cut(s) | 479 |
| TaaI | ACNGT | 4 cut(s) | 95, 143, 594, 664 |
| TaiI | ACGT | 3 cut(s) | 283, 516, 806 |
| TaqI | TCGA | 1 cut(s) | 416 |
| TasI | AATT | 6 cut(s) | 5, 26, 360, 543, 648, 783 |
| TatI | WGTACW | 1 cut(s) | 270 |
| TfiI | GAWTC | 1 cut(s) | 628 |
| Tru1I | TTAA | 7 cut(s) | 216, 264, 285, 296, 435, 510, 603 |
| Tru9I | TTAA | 7 cut(s) | 216, 264, 285, 296, 435, 510, 603 |
| TscAI | CASTG | 3 cut(s) | 416, 597, 667 |
| TseFI | GTSAC | 2 cut(s) | 158, 733 |
| TseI | GCWGC | 3 cut(s) | 690, 758, 761 |
| Tsp45I | GTSAC | 2 cut(s) | 158, 733 |
| TspDTI | ATGAA | 6 cut(s) | 17, 47, 330, 470, 546, 591 |
| TspRI | CASTG | 3 cut(s) | 416, 597, 667 |
| Tth111I | GACNNNGTC | 1 cut(s) | 662 |
| VneI | GTGCAC | 1 cut(s) | 225 |
| XapI | RAATTY | 1 cut(s) | 5 |
| XceI | RCATGY | 3 cut(s) | 112, 196, 645 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 254 |
| XspI | CTAG | 2 cut(s) | 65, 239 |