Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)
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| Species | Orthologous Gene IDs |
|---|---|
| pyrus_communis | pycom11g12230 |
| rosa_laevigata | RLG00000032395 RLG00000032400 |
| rosa_multiflora | Rmu_sc0001070.1_g000019 Rmu_sc0001405.1_g000042 Rmu_sc0029984.1_g000001 Rmu_ssc0000139.1_g000011 |
| rosa_roxburghii | Rroxscaffold_1G00058990 Rroxscaffold_5G00346380 Rroxscaffold_5G00346390 |
| rosa_rugosa | Rorug02G0178500 Rorug05G0046700 Rorug06G0177400 |
| rosa_samantha | Rh2CG235000 Rh5BG137100 Rh6CG459300 Rh6DG446200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 225, 755 |
| AarI | CACCTGC | 1 cut(s) | 1564 |
| Acc36I | ACCTGC | 2 cut(s) | 1564, 1728 |
| AccB1I | GGYRCC | 1 cut(s) | 2693 |
| AccI | GTMKAC | 2 cut(s) | 1904, 2366 |
| AccII | CGCG | 3 cut(s) | 2391, 2534, 2712 |
| AccIII | TCCGGA | 1 cut(s) | 439 |
| AciI | CCGC | 5 cut(s) | 24, 30, 458, 1796, 2389 |
| AclWI | GGATC | 9 cut(s) | 50, 63, 516, 674, 933, 1208, 1544, 2156, 2513 |
| AcsI | RAATTY | 2 cut(s) | 534, 2428 |
| AcuI | CTGAAG | 3 cut(s) | 654, 747, 1505 |
| AcyI | GRCGYC | 1 cut(s) | 5 |
| AdeI | CACNNNGTG | 1 cut(s) | 2566 |
| AfaI | GTAC | 4 cut(s) | 984, 1014, 1990, 2054 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 68, 1461, 2705 |
| AflIII | ACRYGT | 1 cut(s) | 2039 |
| AhlI | ACTAGT | 2 cut(s) | 1418, 1562 |
| AjnI | CCWGG | 2 cut(s) | 51, 265 |
| Alw21I | GWGCWC | 1 cut(s) | 2644 |
| Alw26I | GTCTC | 3 cut(s) | 166, 166, 679 |
| AlwI | GGATC | 9 cut(s) | 50, 63, 516, 674, 933, 1208, 1544, 2156, 2513 |
| Aor13HI | TCCGGA | 1 cut(s) | 439 |
| AoxI | GGCC | 1 cut(s) | 90 |
| ApeKI | GCWGC | 5 cut(s) | 316, 848, 1805, 1919, 2144 |
| ApoI | RAATTY | 2 cut(s) | 534, 2428 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2593 |
| AspLEI | GCGC | 1 cut(s) | 2714 |
| AspS9I | GGNCC | 2 cut(s) | 91, 992 |
| AsuC2I | CCSGG | 2 cut(s) | 2423, 2674 |
| AvaII | GGWCC | 1 cut(s) | 992 |
| AxyI | CCTNAGG | 1 cut(s) | 2664 |
| BaeGI | GKGCMC | 1 cut(s) | 2698 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1004, 1037 |
| BamHI | GGATCC | 1 cut(s) | 55 |
| BanI | GGYRCC | 1 cut(s) | 2693 |
| BanII | GRGCYC | 2 cut(s) | 2644, 2656 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 627, 659 |
| BbsI | GAAGAC | 4 cut(s) | 642, 807, 1419, 2018 |
| Bbv12I | GWGCWC | 1 cut(s) | 2644 |
| BbvI | GCAGC | 5 cut(s) | 303, 860, 1792, 1906, 2131 |
| BccI | CCATC | 5 cut(s) | 359, 1349, 1517, 2195, 2684 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1013, 1047 |
| BciT130I | CCWGG | 2 cut(s) | 53, 267 |
| BciVI | GTATCC | 1 cut(s) | 273 |
| BclI | TGATCA | 3 cut(s) | 544, 1542, 2455 |
| BcnI | CCSGG | 2 cut(s) | 2423, 2674 |
| BcoDI | GTCTC | 3 cut(s) | 166, 166, 679 |
| BcuI | ACTAGT | 2 cut(s) | 1418, 1562 |
| BfaI | CTAG | 6 cut(s) | 392, 714, 1101, 1419, 1467, 1563 |
| BfmI | CTRYAG | 2 cut(s) | 131, 2145 |
| BfuAI | ACCTGC | 2 cut(s) | 1564, 1728 |
| BfuI | GTATCC | 1 cut(s) | 273 |
| BglII | AGATCT | 3 cut(s) | 838, 1388, 2297 |
| BisI | GCNGC | 5 cut(s) | 317, 849, 1806, 1920, 2145 |
| BlsI | GCNGC | 5 cut(s) | 318, 850, 1807, 1921, 2146 |
| BmcAI | AGTACT | 1 cut(s) | 2054 |
| Bme1390I | CCNGG | 4 cut(s) | 53, 267, 2423, 2674 |
| Bme18I | GGWCC | 1 cut(s) | 992 |
| BmgT120I | GGNCC | 2 cut(s) | 91, 992 |
| BmiI | GGNNCC | 6 cut(s) | 45, 57, 376, 1718, 2217, 2695 |
| BmrFI | CCNGG | 4 cut(s) | 53, 267, 2423, 2674 |
| BmrI | ACTGGG | 1 cut(s) | 2379 |
| BmsI | GCATC | 6 cut(s) | 295, 835, 875, 1792, 2461, 2678 |
| BmuI | ACTGGG | 1 cut(s) | 2379 |
| BpiI | GAAGAC | 4 cut(s) | 642, 807, 1419, 2018 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2366, 2398 |
| BpmI | CTGGAG | 4 cut(s) | 710, 951, 2499, 2574 |
| BpuEI | CTTGAG | 2 cut(s) | 342, 2686 |
| BpuMI | CCSGG | 2 cut(s) | 2423, 2674 |
| BsaBI | GATNNNNATC | 2 cut(s) | 837, 2475 |
| BsaHI | GRCGYC | 1 cut(s) | 5 |
| BsaJI | CCNNGG | 6 cut(s) | 154, 771, 956, 1833, 2356, 2580 |
| BsaWI | WCCGGW | 2 cut(s) | 61, 439 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 68, 1461, 2705 |
| Bse1I | ACTGG | 3 cut(s) | 1207, 1455, 2374 |
| Bse21I | CCTNAGG | 1 cut(s) | 2664 |
| Bse3DI | GCAATG | 1 cut(s) | 352 |
| Bse8I | GATNNNNATC | 2 cut(s) | 837, 2475 |
| BseAI | TCCGGA | 1 cut(s) | 439 |
| BseBI | CCWGG | 2 cut(s) | 53, 267 |
| BseDI | CCNNGG | 6 cut(s) | 154, 771, 956, 1833, 2356, 2580 |
| BseGI | GGATG | 4 cut(s) | 850, 920, 1201, 2669 |
| BseJI | GATNNNNATC | 2 cut(s) | 837, 2475 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 68, 1461, 2705 |
| BseMI | GCAATG | 1 cut(s) | 352 |
| BseMII | CTCAG | 4 cut(s) | 933, 1785, 1941, 2655 |
| BseNI | ACTGG | 3 cut(s) | 1207, 1455, 2374 |
| BseRI | GAGGAG | 2 cut(s) | 599, 779 |
| BseSI | GKGCMC | 1 cut(s) | 2698 |
| BseXI | GCAGC | 5 cut(s) | 303, 860, 1792, 1906, 2131 |
| BseYI | CCCAGC | 2 cut(s) | 2184, 2313 |
| Bsh1236I | CGCG | 3 cut(s) | 2391, 2534, 2712 |
| Bsh1285I | CGRYCG | 3 cut(s) | 519, 1010, 2422 |
| BshFI | GGCC | 1 cut(s) | 92 |
| BshNI | GGYRCC | 1 cut(s) | 2693 |
| BsiEI | CGRYCG | 3 cut(s) | 519, 1010, 2422 |
| BsiHKAI | GWGCWC | 1 cut(s) | 2644 |
| BsiSI | CCGG | 4 cut(s) | 62, 440, 2422, 2673 |
| BslFI | GGGAC | 2 cut(s) | 2050, 2699 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 68, 1461, 2705 |
| BsmAI | GTCTC | 3 cut(s) | 166, 166, 679 |
| BsmBI | CGTCTC | 1 cut(s) | 166 |
| BsmFI | GGGAC | 2 cut(s) | 2050, 2699 |
| BsmI | GAATGC | 2 cut(s) | 421, 1628 |
| BsnI | GGCC | 1 cut(s) | 92 |
| Bsp1286I | GDGCHC | 3 cut(s) | 2644, 2656, 2698 |
| Bsp13I | TCCGGA | 1 cut(s) | 439 |
| BspACI | CCGC | 5 cut(s) | 24, 30, 458, 1796, 2389 |
| BspANI | GGCC | 1 cut(s) | 92 |
| BspCNI | CTCAG | 4 cut(s) | 934, 1784, 1942, 2656 |
| BspEI | TCCGGA | 1 cut(s) | 439 |
| BspFNI | CGCG | 3 cut(s) | 2391, 2534, 2712 |
| BspLI | GGNNCC | 6 cut(s) | 45, 57, 376, 1718, 2217, 2695 |
| BspMAI | CTGCAG | 1 cut(s) | 2149 |
| BspMI | ACCTGC | 2 cut(s) | 1564, 1728 |
| BspPI | GGATC | 9 cut(s) | 50, 63, 516, 674, 933, 1208, 1544, 2156, 2513 |
| BspT107I | GGYRCC | 1 cut(s) | 2693 |
| BsrDI | GCAATG | 1 cut(s) | 352 |
| BsrI | ACTGG | 3 cut(s) | 1207, 1455, 2374 |
| BssECI | CCNNGG | 6 cut(s) | 154, 771, 956, 1833, 2356, 2580 |
| BssNAI | GTATAC | 2 cut(s) | 1905, 2367 |
| BssNI | GRCGYC | 1 cut(s) | 5 |
| BssT1I | CCWWGG | 3 cut(s) | 1833, 2356, 2580 |
| Bst1107I | GTATAC | 2 cut(s) | 1905, 2367 |
| Bst2UI | CCWGG | 2 cut(s) | 53, 267 |
| Bst4CI | ACNGT | 7 cut(s) | 155, 705, 1493, 1778, 2057, 2102, 2624 |
| Bst6I | CTCTTC | 6 cut(s) | 287, 600, 756, 1304, 1584, 2447 |
| BstACI | GRCGYC | 1 cut(s) | 5 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2181 |
| BstC8I | GCNNGC | 3 cut(s) | 1973, 2345, 2724 |
| BstDEI | CTNAG | 9 cut(s) | 783, 942, 1233, 1260, 1385, 1771, 1950, 2067, 2664 |
| BstDSI | CCRYGG | 3 cut(s) | 154, 771, 956 |
| BstF5I | GGATG | 4 cut(s) | 850, 920, 1201, 2669 |
| BstFNI | CGCG | 3 cut(s) | 2391, 2534, 2712 |
| BstHHI | GCGC | 1 cut(s) | 2714 |
| BstMAI | GTCTC | 3 cut(s) | 166, 166, 679 |
| BstMCI | CGRYCG | 3 cut(s) | 519, 1010, 2422 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 11, 351, 1312, 1698, 1802, 2181 |
| BstNI | CCWGG | 2 cut(s) | 53, 267 |
| BstNSI | RCATGY | 1 cut(s) | 2043 |
| BstSCI | CCNGG | 4 cut(s) | 51, 265, 2421, 2672 |
| BstSFI | CTRYAG | 2 cut(s) | 131, 2145 |
| BstSLI | GKGCMC | 1 cut(s) | 2698 |
| BstUI | CGCG | 3 cut(s) | 2391, 2534, 2712 |
| BstV1I | GCAGC | 5 cut(s) | 303, 860, 1792, 1906, 2131 |
| BstV2I | GAAGAC | 4 cut(s) | 642, 807, 1419, 2018 |
| BstX2I | RGATCY | 6 cut(s) | 55, 838, 925, 1388, 2297, 2518 |
| BstYI | RGATCY | 6 cut(s) | 55, 838, 925, 1388, 2297, 2518 |
| BstZ17I | GTATAC | 2 cut(s) | 1905, 2367 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2664 |
| BsuI | GTATCC | 1 cut(s) | 273 |
| BsuRI | GGCC | 1 cut(s) | 92 |
| BtgI | CCRYGG | 3 cut(s) | 154, 771, 956 |
| BtgZI | GCGATG | 1 cut(s) | 898 |
| BtsCI | GGATG | 4 cut(s) | 850, 920, 1201, 2669 |
| BtsI | GCAGTG | 3 cut(s) | 1174, 1633, 2021 |
| BtsIMutI | CAGTG | 7 cut(s) | 1174, 1200, 1462, 1545, 1633, 2021, 2098 |
| BveI | ACCTGC | 2 cut(s) | 1564, 1728 |
| Cac8I | GCNNGC | 3 cut(s) | 1973, 2345, 2724 |
| CfoI | GCGC | 1 cut(s) | 2714 |
| Cfr13I | GGNCC | 2 cut(s) | 91, 992 |
| CseI | GACGC | 1 cut(s) | 2326 |
| Csp6I | GTAC | 4 cut(s) | 983, 1013, 1989, 2053 |
| CviQI | GTAC | 4 cut(s) | 983, 1013, 1989, 2053 |
| DdeI | CTNAG | 9 cut(s) | 783, 942, 1233, 1260, 1385, 1771, 1950, 2067, 2664 |
| DraIII | CACNNNGTG | 1 cut(s) | 2566 |
| Eam1104I | CTCTTC | 6 cut(s) | 287, 600, 756, 1304, 1584, 2447 |
| EarI | CTCTTC | 6 cut(s) | 287, 600, 756, 1304, 1584, 2447 |
| EciI | GGCGGA | 1 cut(s) | 19 |
| Ecl136II | GAGCTC | 1 cut(s) | 2642 |
| Eco130I | CCWWGG | 3 cut(s) | 1833, 2356, 2580 |
| Eco24I | GRGCYC | 2 cut(s) | 2644, 2656 |
| Eco47I | GGWCC | 1 cut(s) | 992 |
| Eco53kI | GAGCTC | 1 cut(s) | 2642 |
| Eco57I | CTGAAG | 3 cut(s) | 654, 747, 1505 |
| Eco81I | CCTNAGG | 1 cut(s) | 2664 |
| EcoICRI | GAGCTC | 1 cut(s) | 2642 |
| EcoRII | CCWGG | 2 cut(s) | 51, 265 |
| EcoT14I | CCWWGG | 3 cut(s) | 1833, 2356, 2580 |
| EcoT22I | ATGCAT | 1 cut(s) | 310 |
| EcoT38I | GRGCYC | 2 cut(s) | 2644, 2656 |
| ErhI | CCWWGG | 3 cut(s) | 1833, 2356, 2580 |
| Esp3I | CGTCTC | 1 cut(s) | 166 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 789, 821 |
| FaqI | GGGAC | 2 cut(s) | 2050, 2699 |
| FauI | CCCGC | 1 cut(s) | 1789 |
| FbaI | TGATCA | 3 cut(s) | 544, 1542, 2455 |
| FblI | GTMKAC | 2 cut(s) | 1904, 2366 |
| Fnu4HI | GCNGC | 5 cut(s) | 317, 849, 1806, 1920, 2145 |
| FokI | GGATG | 4 cut(s) | 857, 927, 1208, 2656 |
| FriOI | GRGCYC | 2 cut(s) | 2644, 2656 |
| Fsp4HI | GCNGC | 5 cut(s) | 317, 849, 1806, 1920, 2145 |
| FspBI | CTAG | 6 cut(s) | 392, 714, 1101, 1419, 1467, 1563 |
| GlaI | GCGC | 1 cut(s) | 2713 |
| GluI | GCNGC | 5 cut(s) | 317, 849, 1806, 1920, 2145 |
| GsaI | CCCAGC | 2 cut(s) | 2188, 2317 |
| GsuI | CTGGAG | 4 cut(s) | 710, 951, 2499, 2574 |
| HaeIII | GGCC | 1 cut(s) | 92 |
| HapII | CCGG | 4 cut(s) | 62, 440, 2422, 2673 |
| HgaI | GACGC | 1 cut(s) | 2326 |
| HhaI | GCGC | 1 cut(s) | 2714 |
| Hin1I | GRCGYC | 1 cut(s) | 5 |
| Hin6I | GCGC | 1 cut(s) | 2712 |
| HinP1I | GCGC | 1 cut(s) | 2712 |
| HincII | GTYRAC | 1 cut(s) | 280 |
| HindII | GTYRAC | 1 cut(s) | 280 |
| HindIII | AAGCTT | 4 cut(s) | 434, 1382, 2258, 2720 |
| HpaII | CCGG | 4 cut(s) | 62, 440, 2422, 2673 |
| Hpy166II | GTNNAC | 4 cut(s) | 280, 1097, 1905, 2367 |
| Hpy8I | GTNNAC | 4 cut(s) | 280, 1097, 1905, 2367 |
| Hpy99I | CGWCG | 3 cut(s) | 10, 1878, 1896 |
| HpyCH4III | ACNGT | 7 cut(s) | 155, 705, 1493, 1778, 2057, 2102, 2624 |
| HpyCH4IV | ACGT | 1 cut(s) | 1873 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 11, 351, 1312, 1698, 1802, 2181 |
| HpyF3I | CTNAG | 9 cut(s) | 783, 942, 1233, 1260, 1385, 1771, 1950, 2067, 2664 |
| HpySE526I | ACGT | 1 cut(s) | 1873 |
| Hsp92I | GRCGYC | 1 cut(s) | 5 |
| HspAI | GCGC | 1 cut(s) | 2712 |
| Kpn2I | TCCGGA | 1 cut(s) | 439 |
| Ksp22I | TGATCA | 3 cut(s) | 544, 1542, 2455 |
| LmnI | GCTCC | 3 cut(s) | 43, 342, 2647 |
| Lsp1109I | GCAGC | 5 cut(s) | 303, 860, 1792, 1906, 2131 |
| LweI | GCATC | 6 cut(s) | 295, 835, 875, 1792, 2461, 2678 |
| MaeI | CTAG | 6 cut(s) | 392, 714, 1101, 1419, 1467, 1563 |
| MaeII | ACGT | 1 cut(s) | 1873 |
| MaeIII | GTNAC | 4 cut(s) | 64, 208, 1493, 2096 |
| MfeI | CAATTG | 1 cut(s) | 594 |
| MflI | RGATCY | 6 cut(s) | 55, 838, 925, 1388, 2297, 2518 |
| MhlI | GDGCHC | 3 cut(s) | 2644, 2656, 2698 |
| MlyI | GAGTC | 4 cut(s) | 701, 776, 970, 1669 |
| MmeI | TCCRAC | 1 cut(s) | 1856 |
| Mph1103I | ATGCAT | 1 cut(s) | 310 |
| MroI | TCCGGA | 1 cut(s) | 439 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2593 |
| MseI | TTAA | 8 cut(s) | 312, 432, 447, 660, 1580, 1706, 2327, 2728 |
| MspA1I | CMGCKG | 1 cut(s) | 1701 |
| MspI | CCGG | 4 cut(s) | 62, 440, 2422, 2673 |
| MspR9I | CCNGG | 4 cut(s) | 53, 267, 2423, 2674 |
| MunI | CAATTG | 1 cut(s) | 594 |
| Mva1269I | GAATGC | 2 cut(s) | 421, 1628 |
| MvaI | CCWGG | 2 cut(s) | 53, 267 |
| MvnI | CGCG | 3 cut(s) | 2391, 2534, 2712 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 11, 351, 1312, 1698, 1802, 2181 |
| NciI | CCSGG | 2 cut(s) | 2423, 2674 |
| NlaIV | GGNNCC | 6 cut(s) | 45, 57, 376, 1718, 2217, 2695 |
| NmuCI | GTSAC | 3 cut(s) | 64, 208, 2096 |
| NsiI | ATGCAT | 1 cut(s) | 310 |
| NspI | RCATGY | 1 cut(s) | 2043 |
| PaqCI | CACCTGC | 1 cut(s) | 1564 |
| PciI | ACATGT | 1 cut(s) | 2039 |
| PctI | GAATGC | 2 cut(s) | 421, 1628 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2593 |
| PkrI | GCNGC | 5 cut(s) | 318, 850, 1807, 1921, 2146 |
| Ple19I | CGATCG | 1 cut(s) | 1010 |
| PleI | GAGTC | 4 cut(s) | 700, 775, 969, 1668 |
| PpsI | GAGTC | 4 cut(s) | 700, 775, 969, 1668 |
| PscI | ACATGT | 1 cut(s) | 2039 |
| PsiI | TTATAA | 2 cut(s) | 225, 755 |
| Psp124BI | GAGCTC | 1 cut(s) | 2644 |
| Psp6I | CCWGG | 2 cut(s) | 51, 265 |
| PspFI | CCCAGC | 2 cut(s) | 2184, 2313 |
| PspGI | CCWGG | 2 cut(s) | 51, 265 |
| PspN4I | GGNNCC | 6 cut(s) | 45, 57, 376, 1718, 2217, 2695 |
| PspPI | GGNCC | 2 cut(s) | 91, 992 |
| PstI | CTGCAG | 1 cut(s) | 2149 |
| PsuI | RGATCY | 6 cut(s) | 55, 838, 925, 1388, 2297, 2518 |
| PvuI | CGATCG | 1 cut(s) | 1010 |
| PvuII | CAGCTG | 1 cut(s) | 1701 |
| RsaI | GTAC | 4 cut(s) | 984, 1014, 1990, 2054 |
| RsaNI | GTAC | 4 cut(s) | 983, 1013, 1989, 2053 |
| SacI | GAGCTC | 1 cut(s) | 2644 |
| SaqAI | TTAA | 8 cut(s) | 312, 432, 447, 660, 1580, 1706, 2327, 2728 |
| SatI | GCNGC | 5 cut(s) | 317, 849, 1806, 1920, 2145 |
| Sau96I | GGNCC | 2 cut(s) | 91, 992 |
| ScaI | AGTACT | 1 cut(s) | 2054 |
| SchI | GAGTC | 4 cut(s) | 701, 776, 970, 1669 |
| ScrFI | CCNGG | 4 cut(s) | 53, 267, 2423, 2674 |
| SduI | GDGCHC | 3 cut(s) | 2644, 2656, 2698 |
| SfaNI | GCATC | 6 cut(s) | 295, 835, 875, 1792, 2461, 2678 |
| SfcI | CTRYAG | 2 cut(s) | 131, 2145 |
| SinI | GGWCC | 1 cut(s) | 992 |
| SmlI | CTYRAG | 2 cut(s) | 357, 2701 |
| SmoI | CTYRAG | 2 cut(s) | 357, 2701 |
| SpeI | ACTAGT | 2 cut(s) | 1418, 1562 |
| SsiI | CCGC | 5 cut(s) | 24, 30, 458, 1796, 2389 |
| SspMI | CTAG | 6 cut(s) | 392, 714, 1101, 1419, 1467, 1563 |
| SstI | GAGCTC | 1 cut(s) | 2644 |
| StyD4I | CCNGG | 4 cut(s) | 51, 265, 2421, 2672 |
| StyI | CCWWGG | 3 cut(s) | 1833, 2356, 2580 |
| TaaI | ACNGT | 7 cut(s) | 155, 705, 1493, 1778, 2057, 2102, 2624 |
| TaiI | ACGT | 1 cut(s) | 1876 |
| TaqI | TCGA | 3 cut(s) | 8, 526, 1668 |
| TaqII | GACCGA | 1 cut(s) | 505 |
| TatI | WGTACW | 2 cut(s) | 1988, 2052 |
| Tru1I | TTAA | 8 cut(s) | 312, 432, 447, 660, 1580, 1706, 2327, 2728 |
| Tru9I | TTAA | 8 cut(s) | 312, 432, 447, 660, 1580, 1706, 2327, 2728 |
| TscAI | CASTG | 7 cut(s) | 1174, 1207, 1462, 1552, 1633, 2021, 2105 |
| TseFI | GTSAC | 3 cut(s) | 64, 208, 2096 |
| TseI | GCWGC | 5 cut(s) | 316, 848, 1805, 1919, 2144 |
| Tsp45I | GTSAC | 3 cut(s) | 64, 208, 2096 |
| TspGWI | ACGGA | 4 cut(s) | 760, 806, 973, 1030 |
| TspRI | CASTG | 7 cut(s) | 1174, 1207, 1462, 1552, 1633, 2021, 2105 |
| VpaK11BI | GGWCC | 1 cut(s) | 992 |
| XapI | RAATTY | 2 cut(s) | 534, 2428 |
| XbaI | TCTAGA | 2 cut(s) | 391, 713 |
| XceI | RCATGY | 1 cut(s) | 2043 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2003 |
| XmiI | GTMKAC | 2 cut(s) | 1904, 2366 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2593 |
| XspI | CTAG | 6 cut(s) | 392, 714, 1101, 1419, 1467, 1563 |
| ZrmI | AGTACT | 1 cut(s) | 2054 |
| Zsp2I | ATGCAT | 1 cut(s) | 310 |