Rorug06G0177400
ERF Family

Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0003289
Physical Location & Seq
Reverse (-)
27978857 .. 27980250
1394 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0177400.1

Sequence Viewer

Length: 855 bp
ATGGAAGCACTTAACTATTGGTTTACGGAAGATGAGTGTGAAGCAATTAGCAGTATCACAGTGGGAGCTACACGTCGTCCTGATGTATGTCTATGGAATTATTGTAAGAATGGTAGATACACAGTGAAAAGTGGATATTGGCTAGCATGTGAGGAGTATAGAGAGGAGGCTGCAAATATTGTTCAAGCTCCTAGAAATTTCTGGAAGCATCTATGGAAGCTCAAATTGCCTCCAAAAGTTATTCATTTTCTATGGAGGTGTTCTATGGGGTTTATCCCATGCATGGAGGTCTTACAGTGGAAACAGATTGCTCATTCTGCGAGTTGTTTCAGATGCCAGCAGGGAAGAGAGTCGCCTGTACACGCAATATGGGGTTGTTCGAGTTGTGTTGCGGTGTTCGAAAGGGCGGGTTTTTACTCAAAGCTGTCATCTGGTCAGTTCCCTTCTTTTATTCAATTGTTTCATCATGCTCTTTCTACTCTTGGGGAAGAGGAGTTACAGCTTTTTGCTGTGTTGCTGTGGTTAAATTGGCATGAGAGGAATAATTGTTATCATAAGGGAGTTGTTGTGCCTTCTGATATCATTTATGAGAATGGGGTGAAGTTTCTGAAGAGTTTTAAAGAAGCTATGGGTTGTCATGCTAGAGTGGAATATAGGACAGCGGAAGAGGTGGGTCTGGATAGTTTACGGAGGTGGCAGCCTCCAAGAAGTGGCCGGCTAAAGGTAAATTGTGATGGGGCAGCTAATGTTAATGATAGATGTTTTGGTGGTGGGGCGATTATAAGGGATGAGTTTGGTTCTTTAATCCACTGGTGGGGAAAAGTTTCAACACCCAGTGTCCTCCTTAGTGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Auxin_resp B3

Protein Analysis

284

Amino Acids

32.58

Weight (kDa)

8.35

Isoelectric Point (pI)

48.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 40 - 128 4.4e-10 zinc-binding in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 782
AccB7I CCANNNNNTGG 1 cut(s) 710
AciI CCGC 3 cut(s) 392, 407, 662
AcoI YGGCCR 1 cut(s) 712
AcsI RAATTY 1 cut(s) 196
AcuI CTGAAG 1 cut(s) 629
AdeI CACNNNGTG 1 cut(s) 836
AfaI GTAC 1 cut(s) 360
AfiI CCNNNNNNNGG 4 cut(s) 283, 710, 721, 814
AflIII ACRYGT 1 cut(s) 71
AgsI TTSAA 3 cut(s) 185, 455, 828
AjiI CACGTC 1 cut(s) 74
AluBI AGCT 7 cut(s) 68, 188, 220, 424, 502, 626, 743
AluI AGCT 7 cut(s) 68, 188, 220, 424, 502, 626, 743
AoxI GGCC 1 cut(s) 712
ApeKI GCWGC 3 cut(s) 170, 697, 740
ApoI RAATTY 1 cut(s) 196
Asp700I GAANNNNTTC 1 cut(s) 823
AsuHPI GGTGA 1 cut(s) 610
AsuII TTCGAA 1 cut(s) 399
AsuNHI GCTAGC 1 cut(s) 142
BarI GAAGNNNNNNTAC 2 cut(s) 480, 512
BbvI GCAGC 3 cut(s) 157, 709, 752
BccI CCATC 1 cut(s) 728
BfaI CTAG 3 cut(s) 143, 192, 642
BisI GCNGC 3 cut(s) 171, 698, 741
BlsI GCNGC 3 cut(s) 172, 699, 742
BmgBI CACGTC 1 cut(s) 74
BmrI ACTGGG 1 cut(s) 828
BmsI GCATC 2 cut(s) 217, 323
BmtI GCTAGC 1 cut(s) 146
BmuI ACTGGG 1 cut(s) 828
Bpu14I TTCGAA 1 cut(s) 399
BsaXI ACNNNNNCTCC 2 cut(s) 552, 582
Bsc4I CCNNNNNNNGG 4 cut(s) 283, 710, 721, 814
Bse118I RCCGGY 1 cut(s) 714
Bse1I ACTGG 2 cut(s) 815, 834
BseGI GGATG 1 cut(s) 793
BseLI CCNNNNNNNGG 4 cut(s) 283, 710, 721, 814
BseNI ACTGG 2 cut(s) 815, 834
BseRI GAGGAG 3 cut(s) 167, 179, 506
BseXI GCAGC 3 cut(s) 157, 709, 752
BshFI GGCC 1 cut(s) 714
BsiSI CCGG 1 cut(s) 715
BslI CCNNNNNNNGG 4 cut(s) 283, 710, 721, 814
BsnI GGCC 1 cut(s) 714
Bsp119I TTCGAA 1 cut(s) 399
Bsp1407I TGTACA 1 cut(s) 358
BspACI CCGC 3 cut(s) 392, 407, 662
BspANI GGCC 1 cut(s) 714
BspOI GCTAGC 1 cut(s) 146
BspT104I TTCGAA 1 cut(s) 399
BsrFI RCCGGY 1 cut(s) 714
BsrGI TGTACA 1 cut(s) 358
BsrI ACTGG 2 cut(s) 815, 834
BssAI RCCGGY 1 cut(s) 714
Bst4CI ACNGT 3 cut(s) 61, 124, 297
Bst6I CTCTTC 4 cut(s) 340, 483, 605, 660
BstAUI TGTACA 1 cut(s) 358
BstBI TTCGAA 1 cut(s) 399
BstC8I GCNNGC 3 cut(s) 144, 338, 716
BstDEI CTNAG 1 cut(s) 845
BstF5I GGATG 1 cut(s) 793
BstMWI GCNNNNNNNGC 2 cut(s) 226, 317
BstNSI RCATGY 1 cut(s) 150
BstV1I GCAGC 3 cut(s) 157, 709, 752
BsuRI GGCC 1 cut(s) 714
BtrI CACGTC 1 cut(s) 74
BtsCI GGATG 1 cut(s) 793
BtsIMutI CAGTG 5 cut(s) 66, 129, 302, 808, 841
Cac8I GCNNGC 3 cut(s) 144, 338, 716
Cfr10I RCCGGY 1 cut(s) 714
Csp6I GTAC 1 cut(s) 359
CviAII CATG 6 cut(s) 147, 279, 283, 467, 533, 638
CviQI GTAC 1 cut(s) 359
DdeI CTNAG 1 cut(s) 845
DraI TTTAAA 1 cut(s) 619
DraIII CACNNNGTG 1 cut(s) 836
EaeI YGGCCR 1 cut(s) 712
Eam1104I CTCTTC 4 cut(s) 340, 483, 605, 660
EarI CTCTTC 4 cut(s) 340, 483, 605, 660
Eco32I GATATC 1 cut(s) 580
Eco57I CTGAAG 1 cut(s) 629
EcoRV GATATC 1 cut(s) 580
EcoT22I ATGCAT 1 cut(s) 284
FaeI CATG 6 cut(s) 150, 282, 286, 470, 536, 641
FatI CATG 6 cut(s) 146, 278, 282, 466, 532, 637
FauI CCCGC 1 cut(s) 400
Fnu4HI GCNGC 3 cut(s) 171, 698, 741
FokI GGATG 1 cut(s) 800
Fsp4HI GCNGC 3 cut(s) 171, 698, 741
FspBI CTAG 3 cut(s) 143, 192, 642
GluI GCNGC 3 cut(s) 171, 698, 741
HaeIII GGCC 1 cut(s) 714
HapII CCGG 1 cut(s) 715
Hin1II CATG 6 cut(s) 150, 282, 286, 470, 536, 641
HinfI GANTC 1 cut(s) 350
HpaII CCGG 1 cut(s) 715
HphI GGTGA 1 cut(s) 610
Hpy166II GTNNAC 3 cut(s) 24, 361, 686
Hpy188I TCNGA 3 cut(s) 332, 577, 609
Hpy188III TCNNGA 3 cut(s) 80, 202, 677
Hpy8I GTNNAC 3 cut(s) 24, 361, 686
Hpy99I CGWCG 1 cut(s) 78
HpyAV CCTTC 2 cut(s) 453, 582
HpyCH4III ACNGT 3 cut(s) 61, 124, 297
HpyCH4IV ACGT 1 cut(s) 73
HpyCH4V TGCA 2 cut(s) 173, 282
HpyF10VI GCNNNNNNNGC 2 cut(s) 226, 317
HpyF3I CTNAG 1 cut(s) 845
HpySE526I ACGT 1 cut(s) 73
Hsp92II CATG 6 cut(s) 150, 282, 286, 470, 536, 641
KroI GCCGGC 1 cut(s) 714
KroNI GCCGGC 1 cut(s) 716
LmnI GCTCC 2 cut(s) 65, 193
Lsp1109I GCAGC 3 cut(s) 157, 709, 752
LweI GCATC 2 cut(s) 217, 323
MaeI CTAG 3 cut(s) 143, 192, 642
MaeII ACGT 1 cut(s) 73
MaeIII GTNAC 1 cut(s) 495
MboII GAAGA 5 cut(s) 41, 357, 500, 622, 677
MfeI CAATTG 1 cut(s) 455
MluCI AATT 8 cut(s) 45, 97, 196, 224, 455, 526, 544, 727
MlyI GAGTC 1 cut(s) 359
Mph1103I ATGCAT 1 cut(s) 284
MroNI GCCGGC 1 cut(s) 714
MroXI GAANNNNTTC 1 cut(s) 823
MseI TTAA 5 cut(s) 12, 524, 618, 750, 803
MspA1I CMGCKG 1 cut(s) 662
MspI CCGG 1 cut(s) 715
MunI CAATTG 1 cut(s) 455
MwoI GCNNNNNNNGC 2 cut(s) 226, 317
NaeI GCCGGC 1 cut(s) 716
NgoMIV GCCGGC 1 cut(s) 714
NheI GCTAGC 1 cut(s) 142
NlaIII CATG 6 cut(s) 150, 282, 286, 470, 536, 641
NsiI ATGCAT 1 cut(s) 284
NspI RCATGY 1 cut(s) 150
NspV TTCGAA 1 cut(s) 399
PdiI GCCGGC 1 cut(s) 716
PdmI GAANNNNTTC 1 cut(s) 823
PflMI CCANNNNNTGG 1 cut(s) 710
PkrI GCNGC 3 cut(s) 172, 699, 742
PleI GAGTC 1 cut(s) 358
PpsI GAGTC 1 cut(s) 358
PsiI TTATAA 1 cut(s) 782
RsaI GTAC 1 cut(s) 360
RsaNI GTAC 1 cut(s) 359
SaqAI TTAA 5 cut(s) 12, 524, 618, 750, 803
SatI GCNGC 3 cut(s) 171, 698, 741
SchI GAGTC 1 cut(s) 359
SfaNI GCATC 2 cut(s) 217, 323
SfuI TTCGAA 1 cut(s) 399
Sse9I AATT 8 cut(s) 45, 97, 196, 224, 455, 526, 544, 727
SsiI CCGC 3 cut(s) 392, 407, 662
SspI AATATT 1 cut(s) 178
SspMI CTAG 3 cut(s) 143, 192, 642
TaaI ACNGT 3 cut(s) 61, 124, 297
TaiI ACGT 1 cut(s) 76
TaqI TCGA 2 cut(s) 380, 399
TasI AATT 8 cut(s) 45, 97, 196, 224, 455, 526, 544, 727
TatI WGTACW 1 cut(s) 358
Tru1I TTAA 5 cut(s) 12, 524, 618, 750, 803
Tru9I TTAA 5 cut(s) 12, 524, 618, 750, 803
TscAI CASTG 5 cut(s) 66, 129, 302, 815, 841
TseI GCWGC 3 cut(s) 170, 697, 740
TspDTI ATGAA 2 cut(s) 233, 452
TspGWI ACGGA 2 cut(s) 41, 703
TspRI CASTG 5 cut(s) 66, 129, 302, 815, 841
Van91I CCANNNNNTGG 1 cut(s) 710
XapI RAATTY 1 cut(s) 196
XceI RCATGY 1 cut(s) 150
XmnI GAANNNNTTC 1 cut(s) 823
XspI CTAG 3 cut(s) 143, 192, 642
Zsp2I ATGCAT 1 cut(s) 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.