Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0014836

Physical Location & Seq

Genomic Coordinates Reverse (-)

14034439 .. 14034726

Gene Structure 288 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG137100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGAGGTCTTCGCCCAGAATCCGGATAGTCCCTTCCGAAAGCAGTGAGATTTTTGCTGAGGACCAAGGCTATGTGGACTCTGATGGGTCTGACAATCTAAAAAAGCCTTCTTCTTTCGCTAAAACTCTGACCCAGTCCGACGCCAACAATGGCGGCGGCTTCTCCGTCTCGAGGTACTGCGCCGAGACCATTTTTCAGAGGCTCGACTACTCCGCCGACCCGGCGATGCAGACGGTGGTTGCCAAAGACGTCTACGGCGAGGTGTGGAAGTTTTGGCACATTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_resp B3

Protein Analysis

95

Amino Acids

10.65

Weight (kDa)

4.96

Isoelectric Point (pI)

47.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014836)

Species	Orthologous Gene IDs
pyrus_communis	pycom11g12230
rosa_laevigata	RLG00000032395 RLG00000032400
rosa_multiflora	Rmu_sc0001070.1_g000019 Rmu_sc0001405.1_g000042 Rmu_sc0029984.1_g000001 Rmu_ssc0000139.1_g000011
rosa_roxburghii	Rroxscaffold_1G00058990 Rroxscaffold_5G00346380 Rroxscaffold_5G00346390
rosa_rugosa	Rorug02G0178500 Rorug05G0046700 Rorug06G0177400
rosa_samantha	Rh2CG235000 Rh5BG137100 Rh6CG459300 Rh6DG446200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	252
AccI	GTMKAC	1 cut(s)	252
AccIII	TCCGGA	1 cut(s)	21
AciI	CCGC	3 cut(s)	153, 156, 213
AcyI	GRCGYC	2 cut(s)	141, 249
AfaI	GTAC	1 cut(s)	176
AfiI	CCNNNNNNNGG	2 cut(s)	21, 171
Alw26I	GTCTC	2 cut(s)	172, 179
Ama87I	CYCGRG	1 cut(s)	169
Aor13HI	TCCGGA	1 cut(s)	21
AspLEI	GCGC	1 cut(s)	182
AspS9I	GGNCC	1 cut(s)	61
AsuC2I	CCSGG	1 cut(s)	221
AvaI	CYCGRG	1 cut(s)	169
AvaII	GGWCC	1 cut(s)	61
BbvCI	CCTCAGC	1 cut(s)	57
BccI	CCATC	1 cut(s)	77
BceAI	ACGGC	1 cut(s)	271
BcnI	CCSGG	1 cut(s)	221
BcoDI	GTCTC	2 cut(s)	172, 179
BglI	GCCNNNNNGGC	1 cut(s)	221
BisI	GCNGC	2 cut(s)	154, 157
BlsI	GCNGC	2 cut(s)	155, 158
Bme1390I	CCNGG	1 cut(s)	221
Bme18I	GGWCC	1 cut(s)	61
BmeT110I	CYCGRG	1 cut(s)	169
BmgT120I	GGNCC	1 cut(s)	61
BmrFI	CCNGG	1 cut(s)	221
BmrI	ACTGGG	1 cut(s)	127
BmsI	GCATC	1 cut(s)	216
BmuI	ACTGGG	1 cut(s)	127
Bpu10I	CCTNAGC	1 cut(s)	57
BpuMI	CCSGG	1 cut(s)	221
BsaHI	GRCGYC	2 cut(s)	141, 249
BsaI	GGTCTC	1 cut(s)	179
BsaJI	CCNNGG	1 cut(s)	64
BsaWI	WCCGGW	1 cut(s)	21
Bsc4I	CCNNNNNNNGG	2 cut(s)	21, 171
Bse1I	ACTGG	1 cut(s)	133
BseAI	TCCGGA	1 cut(s)	21
BseDI	CCNNGG	1 cut(s)	64
BseLI	CCNNNNNNNGG	2 cut(s)	21, 171
BseMII	CTCAG	1 cut(s)	48
BseNI	ACTGG	1 cut(s)	133
BsiHKCI	CYCGRG	1 cut(s)	169
BsiSI	CCGG	2 cut(s)	22, 221
BslFI	GGGAC	1 cut(s)	14
BslI	CCNNNNNNNGG	2 cut(s)	21, 171
BsmAI	GTCTC	2 cut(s)	172, 179
BsmBI	CGTCTC	1 cut(s)	172
BsmFI	GGGAC	1 cut(s)	14
Bso31I	GGTCTC	1 cut(s)	179
BsoBI	CYCGRG	1 cut(s)	169
Bsp13I	TCCGGA	1 cut(s)	21
BspACI	CCGC	3 cut(s)	153, 156, 213
BspCNI	CTCAG	1 cut(s)	49
BspEI	TCCGGA	1 cut(s)	21
BspTNI	GGTCTC	1 cut(s)	179
BsrI	ACTGG	1 cut(s)	133
BssECI	CCNNGG	1 cut(s)	64
BssNI	GRCGYC	2 cut(s)	141, 249
BssT1I	CCWWGG	1 cut(s)	64
Bst4CI	ACNGT	1 cut(s)	235
BstACI	GRCGYC	2 cut(s)	141, 249
BstDEI	CTNAG	1 cut(s)	57
BstHHI	GCGC	1 cut(s)	182
BstMAI	GTCTC	2 cut(s)	172, 179
BstMWI	GCNNNNNNNGC	1 cut(s)	221
BstSCI	CCNGG	1 cut(s)	219
BtgZI	GCGATG	1 cut(s)	239
BtsI	GCAGTG	1 cut(s)	49
BtsIMutI	CAGTG	1 cut(s)	49
CfoI	GCGC	1 cut(s)	182
Cfr13I	GGNCC	1 cut(s)	61
CseI	GACGC	1 cut(s)	149
Csp6I	GTAC	1 cut(s)	175
CviJI	RGCY	4 cut(s)	69, 106, 159, 202
CviKI_1	RGCY	4 cut(s)	69, 106, 159, 202
CviQI	GTAC	1 cut(s)	175
DdeI	CTNAG	1 cut(s)	57
EciI	GGCGGA	1 cut(s)	202
Eco130I	CCWWGG	1 cut(s)	64
Eco31I	GGTCTC	1 cut(s)	179
Eco47I	GGWCC	1 cut(s)	61
Eco88I	CYCGRG	1 cut(s)	169
EcoT14I	CCWWGG	1 cut(s)	64
ErhI	CCWWGG	1 cut(s)	64
Esp3I	CGTCTC	1 cut(s)	172
FaiI	YATR	1 cut(s)	72
FaqI	GGGAC	1 cut(s)	14
FblI	GTMKAC	1 cut(s)	252
Fnu4HI	GCNGC	2 cut(s)	154, 157
Fsp4HI	GCNGC	2 cut(s)	154, 157
GlaI	GCGC	1 cut(s)	181
GluI	GCNGC	2 cut(s)	154, 157
HapII	CCGG	2 cut(s)	22, 221
HgaI	GACGC	1 cut(s)	149
HhaI	GCGC	1 cut(s)	182
Hin1I	GRCGYC	2 cut(s)	141, 249
Hin6I	GCGC	1 cut(s)	180
HinP1I	GCGC	1 cut(s)	180
HinfI	GANTC	2 cut(s)	18, 77
HpaII	CCGG	2 cut(s)	22, 221
Hpy166II	GTNNAC	2 cut(s)	76, 253
Hpy188I	TCNGA	6 cut(s)	37, 82, 91, 129, 139, 198
Hpy188III	TCNNGA	2 cut(s)	22, 169
Hpy8I	GTNNAC	2 cut(s)	76, 253
Hpy99I	CGWCG	1 cut(s)	143
HpyAV	CCTTC	2 cut(s)	42, 117
HpyCH4III	ACNGT	1 cut(s)	235
HpyCH4IV	ACGT	1 cut(s)	249
HpyCH4V	TGCA	1 cut(s)	229
HpyF10VI	GCNNNNNNNGC	1 cut(s)	221
HpyF3I	CTNAG	1 cut(s)	57
HpySE526I	ACGT	1 cut(s)	249
Hsp92I	GRCGYC	2 cut(s)	141, 249
HspAI	GCGC	1 cut(s)	180
Kpn2I	TCCGGA	1 cut(s)	21
LpnPI	CCDG	4 cut(s)	28, 35, 146, 234
LweI	GCATC	1 cut(s)	216
MaeII	ACGT	1 cut(s)	249
MboII	GAAGA	1 cut(s)	102
MlyI	GAGTC	1 cut(s)	71
MmeI	TCCRAC	1 cut(s)	162
MnlI	CCTC	4 cut(s)	52, 165, 192, 253
MroI	TCCGGA	1 cut(s)	21
MspI	CCGG	2 cut(s)	22, 221
MspR9I	CCNGG	1 cut(s)	221
MwoI	GCNNNNNNNGC	1 cut(s)	221
NciI	CCSGG	1 cut(s)	221
NmeAIII	GCCGAG	1 cut(s)	208
PaeR7I	CTCGAG	1 cut(s)	169
PcsI	WCGNNNNNNNCGW	1 cut(s)	255
PfeI	GAWTC	1 cut(s)	18
PflFI	GACNNNGTC	1 cut(s)	133
PkrI	GCNGC	2 cut(s)	155, 158
PleI	GAGTC	1 cut(s)	71
PpsI	GAGTC	1 cut(s)	71
PspPI	GGNCC	1 cut(s)	61
PsyI	GACNNNGTC	1 cut(s)	133
RsaI	GTAC	1 cut(s)	176
RsaNI	GTAC	1 cut(s)	175
SatI	GCNGC	2 cut(s)	154, 157
Sau96I	GGNCC	1 cut(s)	61
SchI	GAGTC	1 cut(s)	71
ScrFI	CCNGG	1 cut(s)	221
SetI	ASST	4 cut(s)	8, 176, 252, 264
SfaNI	GCATC	1 cut(s)	216
Sfr274I	CTCGAG	1 cut(s)	169
SinI	GGWCC	1 cut(s)	61
SlaI	CTCGAG	1 cut(s)	169
SmlI	CTYRAG	1 cut(s)	169
SmoI	CTYRAG	1 cut(s)	169
SsiI	CCGC	3 cut(s)	153, 156, 213
StyD4I	CCNGG	1 cut(s)	219
StyI	CCWWGG	1 cut(s)	64
TaaI	ACNGT	1 cut(s)	235
TaiI	ACGT	1 cut(s)	252
TaqI	TCGA	2 cut(s)	170, 204
TauI	GCSGC	2 cut(s)	156, 159
TfiI	GAWTC	1 cut(s)	18
TscAI	CASTG	1 cut(s)	49
TspGWI	ACGGA	1 cut(s)	154
TspRI	CASTG	1 cut(s)	49
Tth111I	GACNNNGTC	1 cut(s)	133
VpaK11BI	GGWCC	1 cut(s)	61
XhoI	CTCGAG	1 cut(s)	169
XmiI	GTMKAC	1 cut(s)	252
ZraI	GACGTC	1 cut(s)	250

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.