Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000139.1

Orthogroup ID

OG0014836

Physical Location & Seq

Genomic Coordinates Forward (+)

80336 .. 80844

Gene Structure 509 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000139.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

atggtcgaccctgaaaccgacgaggtcttcaccagaatctggctcgtcccttccgagagcaacggtttttttgctcaggaccaaggctctgtggactctgatgggtctgacaatctagaaaagccttcttttttcgctaaaactctgacacattccgacgccaacaatggcggcggcttctccgtccctagaagctcgtcgccagttactcgattgtgttcttgcgagcccaaaacgatggcctctgcattgggattcggcaggttaagtggggatcgccggctaggtcgtcaaaatcagggtgaaaccacggctgttatgggggagagtcggttttgccgtattatgggttctcagtgtttctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_resp B3

Protein Analysis

121

Amino Acids

13.09

Weight (kDa)

5.06

Isoelectric Point (pI)

45.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014836)

Species	Orthologous Gene IDs
pyrus_communis	pycom11g12230
rosa_laevigata	RLG00000032395 RLG00000032400
rosa_multiflora	Rmu_sc0001070.1_g000019 Rmu_sc0001405.1_g000042 Rmu_sc0029984.1_g000001 Rmu_ssc0000139.1_g000011
rosa_roxburghii	Rroxscaffold_1G00058990 Rroxscaffold_5G00346380 Rroxscaffold_5G00346390
rosa_rugosa	Rorug02G0178500 Rorug05G0046700 Rorug06G0177400
rosa_samantha	Rh2CG235000 Rh5BG137100 Rh6CG459300 Rh6DG446200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	252
AccB7I	CCANNNNNTGG	1 cut(s)	39
AccI	GTMKAC	1 cut(s)	6
AciI	CCGC	2 cut(s)	171, 174
AclWI	GGATC	1 cut(s)	282
AcyI	GRCGYC	1 cut(s)	159
AfiI	CCNNNNNNNGG	2 cut(s)	39, 346
AluBI	AGCT	1 cut(s)	195
AluI	AGCT	1 cut(s)	195
AlwI	GGATC	1 cut(s)	282
AlwNI	CAGNNNCTG	1 cut(s)	39
AoxI	GGCC	1 cut(s)	240
AspS9I	GGNCC	1 cut(s)	79
AsuHPI	GGTGA	2 cut(s)	22, 314
AvaII	GGWCC	1 cut(s)	79
BanII	GRGCYC	1 cut(s)	231
BbsI	GAAGAC	1 cut(s)	19
BccI	CCATC	2 cut(s)	95, 232
BceAI	ACGGC	2 cut(s)	324, 327
BfaI	CTAG	3 cut(s)	116, 189, 284
BfuAI	ACCTGC	1 cut(s)	252
BisI	GCNGC	2 cut(s)	172, 175
BlsI	GCNGC	2 cut(s)	173, 176
Bme18I	GGWCC	1 cut(s)	79
BmgT120I	GGNCC	1 cut(s)	79
BpiI	GAAGAC	1 cut(s)	19
Bpu10I	CCTNAGC	1 cut(s)	75
BsaHI	GRCGYC	1 cut(s)	159
BsaJI	CCNNGG	2 cut(s)	82, 309
BsaXI	ACNNNNNCTCC	2 cut(s)	317, 347
Bsc4I	CCNNNNNNNGG	2 cut(s)	39, 346
Bse118I	RCCGGY	1 cut(s)	279
Bse1I	ACTGG	1 cut(s)	203
BseDI	CCNNGG	2 cut(s)	82, 309
BseLI	CCNNNNNNNGG	2 cut(s)	39, 346
BseMII	CTCAG	1 cut(s)	89
BseNI	ACTGG	1 cut(s)	203
BshFI	GGCC	1 cut(s)	242
BsiSI	CCGG	1 cut(s)	280
BslFI	GGGAC	2 cut(s)	32, 170
BslI	CCNNNNNNNGG	2 cut(s)	39, 346
BsmFI	GGGAC	2 cut(s)	32, 170
BsnI	GGCC	1 cut(s)	242
Bsp1286I	GDGCHC	1 cut(s)	231
Bsp143I	GATC	1 cut(s)	274
BspACI	CCGC	2 cut(s)	171, 174
BspANI	GGCC	1 cut(s)	242
BspCNI	CTCAG	1 cut(s)	88
BspMI	ACCTGC	1 cut(s)	252
BspPI	GGATC	1 cut(s)	282
BsrFI	RCCGGY	1 cut(s)	279
BsrI	ACTGG	1 cut(s)	203
BssAI	RCCGGY	1 cut(s)	279
BssECI	CCNNGG	2 cut(s)	82, 309
BssMI	GATC	1 cut(s)	274
BssNI	GRCGYC	1 cut(s)	159
BssT1I	CCWWGG	1 cut(s)	82
Bst4CI	ACNGT	1 cut(s)	65
BstACI	GRCGYC	1 cut(s)	159
BstC8I	GCNNGC	2 cut(s)	227, 281
BstDEI	CTNAG	2 cut(s)	75, 354
BstDSI	CCRYGG	1 cut(s)	309
BstKTI	GATC	1 cut(s)	277
BstMBI	GATC	1 cut(s)	274
BstV2I	GAAGAC	1 cut(s)	19
BstXI	CCANNNNNNTGG	1 cut(s)	238
BsuRI	GGCC	1 cut(s)	242
BtgI	CCRYGG	1 cut(s)	309
BtsIMutI	CAGTG	1 cut(s)	362
BveI	ACCTGC	1 cut(s)	252
Cac8I	GCNNGC	2 cut(s)	227, 281
CaiI	CAGNNNCTG	1 cut(s)	39
Cfr10I	RCCGGY	1 cut(s)	279
Cfr13I	GGNCC	1 cut(s)	79
CseI	GACGC	1 cut(s)	167
CviJI	RGCY	9 cut(s)	43, 87, 124, 177, 195, 229, 242, 283, 314
CviKI_1	RGCY	9 cut(s)	43, 87, 124, 177, 195, 229, 242, 283, 314
DdeI	CTNAG	2 cut(s)	75, 354
DpnI	GATC	1 cut(s)	276
DpnII	GATC	1 cut(s)	274
Eco130I	CCWWGG	1 cut(s)	82
Eco24I	GRGCYC	1 cut(s)	231
Eco47I	GGWCC	1 cut(s)	79
EcoT14I	CCWWGG	1 cut(s)	82
EcoT38I	GRGCYC	1 cut(s)	231
ErhI	CCWWGG	1 cut(s)	82
FaiI	YATR	2 cut(s)	320, 347
FaqI	GGGAC	2 cut(s)	32, 170
FblI	GTMKAC	1 cut(s)	6
Fnu4HI	GCNGC	2 cut(s)	172, 175
FriOI	GRGCYC	1 cut(s)	231
Fsp4HI	GCNGC	2 cut(s)	172, 175
FspBI	CTAG	3 cut(s)	116, 189, 284
GluI	GCNGC	2 cut(s)	172, 175
HaeIII	GGCC	1 cut(s)	242
HapII	CCGG	1 cut(s)	280
HgaI	GACGC	1 cut(s)	167
Hin1I	GRCGYC	1 cut(s)	159
HincII	GTYRAC	1 cut(s)	7
HindII	GTYRAC	1 cut(s)	7
HinfI	GANTC	4 cut(s)	36, 95, 255, 328
HpaII	CCGG	1 cut(s)	280
HphI	GGTGA	2 cut(s)	22, 314
Hpy166II	GTNNAC	2 cut(s)	7, 94
Hpy188I	TCNGA	5 cut(s)	55, 100, 109, 147, 157
Hpy188III	TCNNGA	2 cut(s)	77, 116
Hpy8I	GTNNAC	2 cut(s)	7, 94
Hpy99I	CGWCG	3 cut(s)	23, 161, 202
HpyAV	CCTTC	2 cut(s)	60, 135
HpyCH4III	ACNGT	1 cut(s)	65
HpyCH4V	TGCA	1 cut(s)	248
HpyF3I	CTNAG	2 cut(s)	75, 354
Hsp92I	GRCGYC	1 cut(s)	159
KroI	GCCGGC	1 cut(s)	279
KroNI	GCCGGC	1 cut(s)	281
Kzo9I	GATC	1 cut(s)	274
LpnPI	CCDG	8 cut(s)	24, 25, 46, 62, 216, 247, 284, 293
MaeI	CTAG	3 cut(s)	116, 189, 284
MaeIII	GTNAC	1 cut(s)	205
MalI	GATC	1 cut(s)	276
MboI	GATC	1 cut(s)	274
MboII	GAAGA	1 cut(s)	19
MhlI	GDGCHC	1 cut(s)	231
MlyI	GAGTC	2 cut(s)	89, 337
MmeI	TCCRAC	1 cut(s)	180
MnlI	CCTC	2 cut(s)	16, 253
MroNI	GCCGGC	1 cut(s)	279
MseI	TTAA	1 cut(s)	266
MspI	CCGG	1 cut(s)	280
NaeI	GCCGGC	1 cut(s)	281
NdeII	GATC	1 cut(s)	274
NgoMIV	GCCGGC	1 cut(s)	279
PcsI	WCGNNNNNNNCGW	2 cut(s)	51, 337
PdiI	GCCGGC	1 cut(s)	281
PfeI	GAWTC	2 cut(s)	36, 255
PflFI	GACNNNGTC	1 cut(s)	23
PflMI	CCANNNNNTGG	1 cut(s)	39
PkrI	GCNGC	2 cut(s)	173, 176
PleI	GAGTC	2 cut(s)	89, 336
PpsI	GAGTC	2 cut(s)	89, 336
PspPI	GGNCC	1 cut(s)	79
PsrI	GAACNNNNNNTAC	2 cut(s)	334, 366
PstNI	CAGNNNCTG	1 cut(s)	39
PsyI	GACNNNGTC	1 cut(s)	23
SalI	GTCGAC	1 cut(s)	5
SaqAI	TTAA	1 cut(s)	266
SatI	GCNGC	2 cut(s)	172, 175
Sau3AI	GATC	1 cut(s)	274
Sau96I	GGNCC	1 cut(s)	79
SchI	GAGTC	2 cut(s)	89, 337
SduI	GDGCHC	1 cut(s)	231
SetI	ASST	4 cut(s)	27, 197, 266, 289
SinI	GGWCC	1 cut(s)	79
SsiI	CCGC	2 cut(s)	171, 174
SspMI	CTAG	3 cut(s)	116, 189, 284
StyI	CCWWGG	1 cut(s)	82
TaaI	ACNGT	1 cut(s)	65
TaqI	TCGA	2 cut(s)	6, 211
TauI	GCSGC	2 cut(s)	174, 177
TfiI	GAWTC	2 cut(s)	36, 255
Tru1I	TTAA	1 cut(s)	266
Tru9I	TTAA	1 cut(s)	266
TscAI	CASTG	1 cut(s)	362
TspGWI	ACGGA	1 cut(s)	172
TspRI	CASTG	1 cut(s)	362
Tth111I	GACNNNGTC	1 cut(s)	23
Van91I	CCANNNNNTGG	1 cut(s)	39
VpaK11BI	GGWCC	1 cut(s)	79
XbaI	TCTAGA	1 cut(s)	115
XcmI	CCANNNNNNNNNTGG	1 cut(s)	316
XmiI	GTMKAC	1 cut(s)	6
XspI	CTAG	3 cut(s)	116, 189, 284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.