Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)
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| Species | Orthologous Gene IDs |
|---|---|
| pyrus_communis | pycom11g12230 |
| rosa_laevigata | RLG00000032395 RLG00000032400 |
| rosa_multiflora | Rmu_sc0001070.1_g000019 Rmu_sc0001405.1_g000042 Rmu_sc0029984.1_g000001 Rmu_ssc0000139.1_g000011 |
| rosa_roxburghii | Rroxscaffold_1G00058990 Rroxscaffold_5G00346380 Rroxscaffold_5G00346390 |
| rosa_rugosa | Rorug02G0178500 Rorug05G0046700 Rorug06G0177400 |
| rosa_samantha | Rh2CG235000 Rh5BG137100 Rh6CG459300 Rh6DG446200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 39 |
| AccI | GTMKAC | 1 cut(s) | 6 |
| AciI | CCGC | 1 cut(s) | 171 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 39, 189 |
| AluBI | AGCT | 1 cut(s) | 177 |
| AluI | AGCT | 1 cut(s) | 177 |
| Alw26I | GTCTC | 1 cut(s) | 52 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 39 |
| Ama87I | CYCGRG | 1 cut(s) | 214 |
| ApeKI | GCWGC | 1 cut(s) | 174 |
| AspA2I | CCTAGG | 1 cut(s) | 188 |
| AspLEI | GCGC | 1 cut(s) | 200 |
| AsuC2I | CCSGG | 1 cut(s) | 11 |
| AvaI | CYCGRG | 1 cut(s) | 214 |
| AvrII | CCTAGG | 1 cut(s) | 188 |
| BbvI | GCAGC | 1 cut(s) | 186 |
| BccI | CCATC | 1 cut(s) | 95 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 53, 87 |
| BcnI | CCSGG | 1 cut(s) | 11 |
| BcoDI | GTCTC | 1 cut(s) | 52 |
| BfaI | CTAG | 1 cut(s) | 189 |
| BisI | GCNGC | 2 cut(s) | 172, 175 |
| BlnI | CCTAGG | 1 cut(s) | 188 |
| BlsI | GCNGC | 2 cut(s) | 173, 176 |
| Bme1390I | CCNGG | 1 cut(s) | 11 |
| BmeT110I | CYCGRG | 1 cut(s) | 214 |
| BmrFI | CCNGG | 1 cut(s) | 11 |
| BpuEI | CTTGAG | 1 cut(s) | 60 |
| BpuMI | CCSGG | 1 cut(s) | 11 |
| BsaJI | CCNNGG | 2 cut(s) | 82, 188 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 39, 189 |
| BseDI | CCNNGG | 2 cut(s) | 82, 188 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 39, 189 |
| BseXI | GCAGC | 1 cut(s) | 186 |
| BsiHKCI | CYCGRG | 1 cut(s) | 214 |
| BsiSI | CCGG | 2 cut(s) | 11, 230 |
| BslFI | GGGAC | 1 cut(s) | 170 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 39, 189 |
| BsmAI | GTCTC | 1 cut(s) | 52 |
| BsmBI | CGTCTC | 1 cut(s) | 52 |
| BsmFI | GGGAC | 1 cut(s) | 170 |
| BsoBI | CYCGRG | 1 cut(s) | 214 |
| BspACI | CCGC | 1 cut(s) | 171 |
| BssECI | CCNNGG | 2 cut(s) | 82, 188 |
| BssT1I | CCWWGG | 2 cut(s) | 82, 188 |
| Bst4CI | ACNGT | 1 cut(s) | 153 |
| Bst6I | CTCTTC | 1 cut(s) | 55 |
| BstDEI | CTNAG | 1 cut(s) | 28 |
| BstHHI | GCGC | 1 cut(s) | 200 |
| BstMAI | GTCTC | 1 cut(s) | 52 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 226 |
| BstSCI | CCNGG | 1 cut(s) | 9 |
| BstV1I | GCAGC | 1 cut(s) | 186 |
| CaiI | CAGNNNCTG | 1 cut(s) | 39 |
| CfoI | GCGC | 1 cut(s) | 200 |
| CviJI | RGCY | 6 cut(s) | 32, 43, 87, 124, 177, 220 |
| CviKI_1 | RGCY | 6 cut(s) | 32, 43, 87, 124, 177, 220 |
| DdeI | CTNAG | 1 cut(s) | 28 |
| Eam1104I | CTCTTC | 1 cut(s) | 55 |
| EarI | CTCTTC | 1 cut(s) | 55 |
| Eco130I | CCWWGG | 2 cut(s) | 82, 188 |
| Eco88I | CYCGRG | 1 cut(s) | 214 |
| EcoT14I | CCWWGG | 2 cut(s) | 82, 188 |
| ErhI | CCWWGG | 2 cut(s) | 82, 188 |
| Esp3I | CGTCTC | 1 cut(s) | 52 |
| FaqI | GGGAC | 1 cut(s) | 170 |
| FblI | GTMKAC | 1 cut(s) | 6 |
| Fnu4HI | GCNGC | 2 cut(s) | 172, 175 |
| Fsp4HI | GCNGC | 2 cut(s) | 172, 175 |
| FspBI | CTAG | 1 cut(s) | 189 |
| GlaI | GCGC | 1 cut(s) | 199 |
| GluI | GCNGC | 2 cut(s) | 172, 175 |
| HapII | CCGG | 2 cut(s) | 11, 230 |
| HhaI | GCGC | 1 cut(s) | 200 |
| Hin6I | GCGC | 1 cut(s) | 198 |
| HinP1I | GCGC | 1 cut(s) | 198 |
| HincII | GTYRAC | 1 cut(s) | 7 |
| HindII | GTYRAC | 1 cut(s) | 7 |
| HinfI | GANTC | 2 cut(s) | 36, 95 |
| HpaII | CCGG | 2 cut(s) | 11, 230 |
| Hpy166II | GTNNAC | 2 cut(s) | 7, 94 |
| Hpy188I | TCNGA | 4 cut(s) | 55, 100, 109, 147 |
| Hpy188III | TCNNGA | 3 cut(s) | 77, 116, 214 |
| Hpy8I | GTNNAC | 2 cut(s) | 7, 94 |
| Hpy99I | CGWCG | 1 cut(s) | 23 |
| HpyAV | CCTTC | 1 cut(s) | 135 |
| HpyCH4III | ACNGT | 1 cut(s) | 153 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 226 |
| HpyF3I | CTNAG | 1 cut(s) | 28 |
| HspAI | GCGC | 1 cut(s) | 198 |
| LpnPI | CCDG | 4 cut(s) | 24, 25, 46, 101 |
| Lsp1109I | GCAGC | 1 cut(s) | 186 |
| MaeI | CTAG | 1 cut(s) | 189 |
| MboII | GAAGA | 2 cut(s) | 42, 120 |
| MlyI | GAGTC | 1 cut(s) | 89 |
| MnlI | CCTC | 2 cut(s) | 16, 210 |
| MspI | CCGG | 2 cut(s) | 11, 230 |
| MspR9I | CCNGG | 1 cut(s) | 11 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 226 |
| NciI | CCSGG | 1 cut(s) | 11 |
| PaeR7I | CTCGAG | 1 cut(s) | 214 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 51 |
| PfeI | GAWTC | 1 cut(s) | 36 |
| PflFI | GACNNNGTC | 2 cut(s) | 23, 151 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 39 |
| PkrI | GCNGC | 2 cut(s) | 173, 176 |
| PleI | GAGTC | 1 cut(s) | 89 |
| PpsI | GAGTC | 1 cut(s) | 89 |
| PstNI | CAGNNNCTG | 1 cut(s) | 39 |
| PsyI | GACNNNGTC | 2 cut(s) | 23, 151 |
| SalI | GTCGAC | 1 cut(s) | 5 |
| SatI | GCNGC | 2 cut(s) | 172, 175 |
| SchI | GAGTC | 1 cut(s) | 89 |
| ScrFI | CCNGG | 1 cut(s) | 11 |
| SetI | ASST | 4 cut(s) | 27, 179, 194, 228 |
| Sfr274I | CTCGAG | 1 cut(s) | 214 |
| SlaI | CTCGAG | 1 cut(s) | 214 |
| SmlI | CTYRAG | 2 cut(s) | 75, 214 |
| SmoI | CTYRAG | 2 cut(s) | 75, 214 |
| SsiI | CCGC | 1 cut(s) | 171 |
| SspMI | CTAG | 1 cut(s) | 189 |
| StyD4I | CCNGG | 1 cut(s) | 9 |
| StyI | CCWWGG | 2 cut(s) | 82, 188 |
| TaaI | ACNGT | 1 cut(s) | 153 |
| TaqI | TCGA | 3 cut(s) | 6, 215, 222 |
| TauI | GCSGC | 1 cut(s) | 174 |
| TfiI | GAWTC | 1 cut(s) | 36 |
| TseI | GCWGC | 1 cut(s) | 174 |
| TspGWI | ACGGA | 1 cut(s) | 172 |
| Tth111I | GACNNNGTC | 2 cut(s) | 23, 151 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 39 |
| XhoI | CTCGAG | 1 cut(s) | 214 |
| XmaJI | CCTAGG | 1 cut(s) | 188 |
| XmiI | GTMKAC | 1 cut(s) | 6 |
| XspI | CTAG | 1 cut(s) | 189 |