Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)
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| Species | Orthologous Gene IDs |
|---|---|
| pyrus_communis | pycom11g12230 |
| rosa_laevigata | RLG00000032395 RLG00000032400 |
| rosa_multiflora | Rmu_sc0001070.1_g000019 Rmu_sc0001405.1_g000042 Rmu_sc0029984.1_g000001 Rmu_ssc0000139.1_g000011 |
| rosa_roxburghii | Rroxscaffold_1G00058990 Rroxscaffold_5G00346380 Rroxscaffold_5G00346390 |
| rosa_rugosa | Rorug02G0178500 Rorug05G0046700 Rorug06G0177400 |
| rosa_samantha | Rh2CG235000 Rh5BG137100 Rh6CG459300 Rh6DG446200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 171, 174 |
| AcoI | YGGCCR | 1 cut(s) | 3 |
| AfaI | GTAC | 1 cut(s) | 194 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 39 |
| AluBI | AGCT | 1 cut(s) | 67 |
| AluI | AGCT | 1 cut(s) | 67 |
| Ama87I | CYCGRG | 1 cut(s) | 214 |
| AoxI | GGCC | 1 cut(s) | 3 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 11, 43 |
| AspLEI | GCGC | 1 cut(s) | 200 |
| AspS9I | GGNCC | 2 cut(s) | 46, 79 |
| AvaI | CYCGRG | 1 cut(s) | 214 |
| AvaII | GGWCC | 2 cut(s) | 46, 79 |
| BbsI | GAAGAC | 1 cut(s) | 19 |
| BccI | CCATC | 2 cut(s) | 239, 247 |
| BisI | GCNGC | 2 cut(s) | 172, 175 |
| BlsI | GCNGC | 2 cut(s) | 173, 176 |
| BmcAI | AGTACT | 1 cut(s) | 194 |
| Bme18I | GGWCC | 2 cut(s) | 46, 79 |
| BmeT110I | CYCGRG | 1 cut(s) | 214 |
| BmgT120I | GGNCC | 2 cut(s) | 46, 79 |
| BmiI | GGNNCC | 1 cut(s) | 48 |
| BmsI | GCATC | 1 cut(s) | 148 |
| BpiI | GAAGAC | 1 cut(s) | 19 |
| Bpu10I | CCTNAGC | 1 cut(s) | 75 |
| BsaJI | CCNNGG | 2 cut(s) | 82, 215 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 39 |
| BseDI | CCNNGG | 2 cut(s) | 82, 215 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 39 |
| BseMII | CTCAG | 1 cut(s) | 89 |
| BshFI | GGCC | 1 cut(s) | 5 |
| BsiHKCI | CYCGRG | 1 cut(s) | 214 |
| BsiSI | CCGG | 1 cut(s) | 40 |
| BslFI | GGGAC | 1 cut(s) | 32 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 39 |
| BsmFI | GGGAC | 1 cut(s) | 32 |
| BsnI | GGCC | 1 cut(s) | 5 |
| BsoBI | CYCGRG | 1 cut(s) | 214 |
| BspACI | CCGC | 2 cut(s) | 171, 174 |
| BspANI | GGCC | 1 cut(s) | 5 |
| BspCNI | CTCAG | 1 cut(s) | 88 |
| BspLI | GGNNCC | 1 cut(s) | 48 |
| BssECI | CCNNGG | 2 cut(s) | 82, 215 |
| BssT1I | CCWWGG | 1 cut(s) | 82 |
| BstDEI | CTNAG | 1 cut(s) | 75 |
| BstHHI | GCGC | 1 cut(s) | 200 |
| BstV2I | GAAGAC | 1 cut(s) | 19 |
| BsuRI | GGCC | 1 cut(s) | 5 |
| BtsIMutI | CAGTG | 1 cut(s) | 249 |
| CfoI | GCGC | 1 cut(s) | 200 |
| Cfr13I | GGNCC | 2 cut(s) | 46, 79 |
| Csp6I | GTAC | 1 cut(s) | 193 |
| CviJI | RGCY | 7 cut(s) | 5, 43, 67, 87, 124, 177, 220 |
| CviKI_1 | RGCY | 7 cut(s) | 5, 43, 67, 87, 124, 177, 220 |
| CviQI | GTAC | 1 cut(s) | 193 |
| DdeI | CTNAG | 1 cut(s) | 75 |
| EaeI | YGGCCR | 1 cut(s) | 3 |
| Eco130I | CCWWGG | 1 cut(s) | 82 |
| Eco47I | GGWCC | 2 cut(s) | 46, 79 |
| Eco88I | CYCGRG | 1 cut(s) | 214 |
| EcoT14I | CCWWGG | 1 cut(s) | 82 |
| ErhI | CCWWGG | 1 cut(s) | 82 |
| FaqI | GGGAC | 1 cut(s) | 32 |
| Fnu4HI | GCNGC | 2 cut(s) | 172, 175 |
| Fsp4HI | GCNGC | 2 cut(s) | 172, 175 |
| GlaI | GCGC | 1 cut(s) | 199 |
| GluI | GCNGC | 2 cut(s) | 172, 175 |
| HaeIII | GGCC | 1 cut(s) | 5 |
| HapII | CCGG | 1 cut(s) | 40 |
| HhaI | GCGC | 1 cut(s) | 200 |
| Hin6I | GCGC | 1 cut(s) | 198 |
| HinP1I | GCGC | 1 cut(s) | 198 |
| HindIII | AAGCTT | 1 cut(s) | 65 |
| HinfI | GANTC | 2 cut(s) | 36, 95 |
| HpaII | CCGG | 1 cut(s) | 40 |
| Hpy166II | GTNNAC | 1 cut(s) | 94 |
| Hpy188I | TCNGA | 2 cut(s) | 55, 157 |
| Hpy188III | TCNNGA | 2 cut(s) | 116, 214 |
| Hpy8I | GTNNAC | 1 cut(s) | 94 |
| HpyAV | CCTTC | 2 cut(s) | 60, 135 |
| HpyF3I | CTNAG | 1 cut(s) | 75 |
| HspAI | GCGC | 1 cut(s) | 198 |
| LpnPI | CCDG | 6 cut(s) | 23, 29, 46, 53, 62, 101 |
| LweI | GCATC | 1 cut(s) | 148 |
| MboII | GAAGA | 2 cut(s) | 19, 120 |
| MfeI | CAATTG | 1 cut(s) | 166 |
| MluCI | AATT | 1 cut(s) | 166 |
| MlyI | GAGTC | 1 cut(s) | 89 |
| MnlI | CCTC | 1 cut(s) | 210 |
| MspI | CCGG | 1 cut(s) | 40 |
| MunI | CAATTG | 1 cut(s) | 166 |
| NlaIV | GGNNCC | 1 cut(s) | 48 |
| PfeI | GAWTC | 1 cut(s) | 36 |
| PflFI | GACNNNGTC | 1 cut(s) | 23 |
| PkrI | GCNGC | 2 cut(s) | 173, 176 |
| PleI | GAGTC | 1 cut(s) | 89 |
| PpsI | GAGTC | 1 cut(s) | 89 |
| PspN4I | GGNNCC | 1 cut(s) | 48 |
| PspPI | GGNCC | 2 cut(s) | 46, 79 |
| PsyI | GACNNNGTC | 1 cut(s) | 23 |
| RsaI | GTAC | 1 cut(s) | 194 |
| RsaNI | GTAC | 1 cut(s) | 193 |
| SatI | GCNGC | 2 cut(s) | 172, 175 |
| Sau96I | GGNCC | 2 cut(s) | 46, 79 |
| ScaI | AGTACT | 1 cut(s) | 194 |
| SchI | GAGTC | 1 cut(s) | 89 |
| SetI | ASST | 3 cut(s) | 27, 69, 81 |
| SfaNI | GCATC | 1 cut(s) | 148 |
| SinI | GGWCC | 2 cut(s) | 46, 79 |
| Sse9I | AATT | 1 cut(s) | 166 |
| SsiI | CCGC | 2 cut(s) | 171, 174 |
| StyI | CCWWGG | 1 cut(s) | 82 |
| TaqI | TCGA | 2 cut(s) | 222, 234 |
| TasI | AATT | 1 cut(s) | 166 |
| TatI | WGTACW | 1 cut(s) | 192 |
| TauI | GCSGC | 2 cut(s) | 174, 177 |
| TfiI | GAWTC | 1 cut(s) | 36 |
| TscAI | CASTG | 1 cut(s) | 249 |
| TspRI | CASTG | 1 cut(s) | 249 |
| Tth111I | GACNNNGTC | 1 cut(s) | 23 |
| VpaK11BI | GGWCC | 2 cut(s) | 46, 79 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 40 |
| ZrmI | AGTACT | 1 cut(s) | 194 |