Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0014836

Physical Location & Seq

Genomic Coordinates Reverse (-)

14376736 .. 14379208

Gene Structure 2473 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032395

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGAGGTCTTCGCCCAGAATCTGGCTAGTCCCTTCCGAAAGCAGCAAGCTTTTTGCTGAAGACCAAGGCTATGTGGACTTTGATGGGTTTGACAATCTAGAAAAGCCTTCTTCTTTTGCTAAAACTCTGACCCAGTCCGATGCCAACAATGGCGAAGGCTTCTCTGTCTCGAGGTACTGCGTCGAGACCATTTTTCCGAGGCTCGACTACTCCGCCGACCCGCTGATGCAGACCGTGGCTGCCAAGGACGTCTATGGCGAGAAGAAGCTCGTTGCTGGTGTCTCAATTGTGTTCCTGCGAACCCAAAACTGCGACCTCTTTGTCGAGATTTGGAGGGCCAAGCGGGGATCGCCAAAGGGGTCGTCGGAATCGGGGTGGAACCACAGTGGTTCTAGGGGAGTGTCGGTTTTTCCGTATTCCAGAAAGCATGGCAATGGAGACCGGAAAGACGGTGAAGAGCATAATGAGGATTCTGTCTTTGATGTTGATCTGGACCCCGAGAGGATCCTCCTCTATGAGGCAAGGCGGAGGAGGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_resp B3

Protein Analysis

180

Amino Acids

20.24

Weight (kDa)

5.69

Isoelectric Point (pI)

48.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014836)

Species	Orthologous Gene IDs
pyrus_communis	pycom11g12230
rosa_laevigata	RLG00000032395 RLG00000032400
rosa_multiflora	Rmu_sc0001070.1_g000019 Rmu_sc0001405.1_g000042 Rmu_sc0029984.1_g000001 Rmu_ssc0000139.1_g000011
rosa_roxburghii	Rroxscaffold_1G00058990 Rroxscaffold_5G00346380 Rroxscaffold_5G00346390
rosa_rugosa	Rorug02G0178500 Rorug05G0046700 Rorug06G0177400
rosa_samantha	Rh2CG235000 Rh5BG137100 Rh6CG459300 Rh6DG446200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	320
AatII	GACGTC	1 cut(s)	252
AccB7I	CCANNNNNTGG	1 cut(s)	21
AciI	CCGC	4 cut(s)	213, 221, 343, 526
AclWI	GGATC	3 cut(s)	355, 499, 512
AcuI	CTGAAG	1 cut(s)	78
AcyI	GRCGYC	1 cut(s)	249
AfaI	GTAC	1 cut(s)	176
AfiI	CCNNNNNNNGG	2 cut(s)	21, 517
AluBI	AGCT	2 cut(s)	49, 268
AluI	AGCT	2 cut(s)	49, 268
Alw26I	GTCTC	4 cut(s)	172, 179, 286, 432
AlwI	GGATC	3 cut(s)	355, 499, 512
AlwNI	CAGNNNCTG	1 cut(s)	21
Ama87I	CYCGRG	2 cut(s)	169, 497
AoxI	GGCC	1 cut(s)	336
ApeKI	GCWGC	2 cut(s)	42, 239
ArsI	GACNNNNNNTTYG	2 cut(s)	347, 379
AspS9I	GGNCC	2 cut(s)	336, 493
AsuHPI	GGTGA	1 cut(s)	464
AvaI	CYCGRG	2 cut(s)	169, 497
AvaII	GGWCC	1 cut(s)	493
BamHI	GGATCC	1 cut(s)	504
BbsI	GAAGAC	1 cut(s)	66
BbvI	GCAGC	2 cut(s)	54, 226
BccI	CCATC	1 cut(s)	77
BcoDI	GTCTC	4 cut(s)	172, 179, 286, 432
BfaI	CTAG	3 cut(s)	26, 98, 393
BisI	GCNGC	2 cut(s)	43, 240
BlsI	GCNGC	2 cut(s)	44, 241
Bme18I	GGWCC	1 cut(s)	493
BmeT110I	CYCGRG	2 cut(s)	169, 497
BmgT120I	GGNCC	2 cut(s)	336, 493
BmiI	GGNNCC	3 cut(s)	380, 495, 506
BmrI	ACTGGG	1 cut(s)	127
BmsI	GCATC	2 cut(s)	130, 216
BmuI	ACTGGG	1 cut(s)	127
BpiI	GAAGAC	1 cut(s)	66
BsaBI	GATNNNNATC	1 cut(s)	486
BsaHI	GRCGYC	1 cut(s)	249
BsaI	GGTCTC	2 cut(s)	179, 432
BsaJI	CCNNGG	4 cut(s)	64, 197, 234, 243
BsaWI	WCCGGW	1 cut(s)	441
BsaXI	ACNNNNNCTCC	2 cut(s)	390, 420
Bsc4I	CCNNNNNNNGG	2 cut(s)	21, 517
Bse1I	ACTGG	1 cut(s)	133
Bse3DI	GCAATG	1 cut(s)	439
Bse8I	GATNNNNATC	1 cut(s)	486
BseDI	CCNNGG	4 cut(s)	64, 197, 234, 243
BseGI	GGATG	1 cut(s)	540
BseJI	GATNNNNATC	1 cut(s)	486
BseLI	CCNNNNNNNGG	2 cut(s)	21, 517
BseMI	GCAATG	1 cut(s)	439
BseNI	ACTGG	1 cut(s)	133
BseRI	GAGGAG	1 cut(s)	500
BseXI	GCAGC	2 cut(s)	54, 226
BshFI	GGCC	1 cut(s)	338
BsiHKCI	CYCGRG	2 cut(s)	169, 497
BsiSI	CCGG	1 cut(s)	442
BslFI	GGGAC	1 cut(s)	14
BslI	CCNNNNNNNGG	2 cut(s)	21, 517
BsmAI	GTCTC	4 cut(s)	172, 179, 286, 432
BsmFI	GGGAC	1 cut(s)	14
BsnI	GGCC	1 cut(s)	338
Bso31I	GGTCTC	2 cut(s)	179, 432
BsoBI	CYCGRG	2 cut(s)	169, 497
Bsp143I	GATC	3 cut(s)	347, 487, 504
BspACI	CCGC	4 cut(s)	213, 221, 343, 526
BspANI	GGCC	1 cut(s)	338
BspLI	GGNNCC	3 cut(s)	380, 495, 506
BspPI	GGATC	3 cut(s)	355, 499, 512
BspQI	GCTCTTC	1 cut(s)	450
BspTNI	GGTCTC	2 cut(s)	179, 432
BsrDI	GCAATG	1 cut(s)	439
BsrI	ACTGG	1 cut(s)	133
BssECI	CCNNGG	4 cut(s)	64, 197, 234, 243
BssMI	GATC	3 cut(s)	347, 487, 504
BssNI	GRCGYC	1 cut(s)	249
BssT1I	CCWWGG	2 cut(s)	64, 243
Bst4CI	ACNGT	3 cut(s)	235, 386, 452
Bst6I	CTCTTC	1 cut(s)	450
BstACI	GRCGYC	1 cut(s)	249
BstC8I	GCNNGC	1 cut(s)	47
BstDSI	CCRYGG	1 cut(s)	234
BstENI	CCTNNNNNAGG	1 cut(s)	515
BstF5I	GGATG	1 cut(s)	540
BstKTI	GATC	3 cut(s)	350, 490, 507
BstMAI	GTCTC	4 cut(s)	172, 179, 286, 432
BstMBI	GATC	3 cut(s)	347, 487, 504
BstMWI	GCNNNNNNNGC	1 cut(s)	349
BstV1I	GCAGC	2 cut(s)	54, 226
BstV2I	GAAGAC	1 cut(s)	66
BstX2I	RGATCY	1 cut(s)	504
BstYI	RGATCY	1 cut(s)	504
BsuRI	GGCC	1 cut(s)	338
BtgI	CCRYGG	1 cut(s)	234
BtsCI	GGATG	1 cut(s)	540
BtsIMutI	CAGTG	1 cut(s)	391
Cac8I	GCNNGC	1 cut(s)	47
CaiI	CAGNNNCTG	1 cut(s)	21
Cfr13I	GGNCC	2 cut(s)	336, 493
CseI	GACGC	1 cut(s)	169
Csp6I	GTAC	1 cut(s)	175
CviAII	CATG	1 cut(s)	428
CviJI	RGCY	9 cut(s)	25, 49, 69, 106, 159, 202, 239, 268, 338
CviKI_1	RGCY	9 cut(s)	25, 49, 69, 106, 159, 202, 239, 268, 338
CviQI	GTAC	1 cut(s)	175
DpnI	GATC	3 cut(s)	349, 489, 506
DpnII	GATC	3 cut(s)	347, 487, 504
DrdI	GACNNNNNNGTC	1 cut(s)	320
DseDI	GACNNNNNNGTC	1 cut(s)	320
Eam1104I	CTCTTC	1 cut(s)	450
EarI	CTCTTC	1 cut(s)	450
EciI	GGCGGA	1 cut(s)	202
Eco130I	CCWWGG	2 cut(s)	64, 243
Eco31I	GGTCTC	2 cut(s)	179, 432
Eco47I	GGWCC	1 cut(s)	493
Eco57I	CTGAAG	1 cut(s)	78
Eco88I	CYCGRG	2 cut(s)	169, 497
EcoNI	CCTNNNNNAGG	1 cut(s)	515
EcoT14I	CCWWGG	2 cut(s)	64, 243
ErhI	CCWWGG	2 cut(s)	64, 243
FaeI	CATG	1 cut(s)	431
FaiI	YATR	5 cut(s)	72, 255, 429, 462, 516
FaqI	GGGAC	1 cut(s)	14
FatI	CATG	1 cut(s)	427
FauI	CCCGC	2 cut(s)	228, 336
Fnu4HI	GCNGC	2 cut(s)	43, 240
Fsp4HI	GCNGC	2 cut(s)	43, 240
FspBI	CTAG	3 cut(s)	26, 98, 393
GluI	GCNGC	2 cut(s)	43, 240
HaeIII	GGCC	1 cut(s)	338
HapII	CCGG	1 cut(s)	442
HgaI	GACGC	1 cut(s)	169
Hin1I	GRCGYC	1 cut(s)	249
Hin1II	CATG	1 cut(s)	431
HindIII	AAGCTT	1 cut(s)	47
HinfI	GANTC	3 cut(s)	18, 368, 470
HpaII	CCGG	1 cut(s)	442
HphI	GGTGA	1 cut(s)	464
Hpy166II	GTNNAC	1 cut(s)	76
Hpy188I	TCNGA	5 cut(s)	37, 129, 139, 198, 367
Hpy188III	TCNNGA	6 cut(s)	98, 169, 184, 325, 420, 491
Hpy8I	GTNNAC	1 cut(s)	76
Hpy99I	CGWCG	2 cut(s)	185, 367
HpyAV	CCTTC	3 cut(s)	42, 117, 149
HpyCH4III	ACNGT	3 cut(s)	235, 386, 452
HpyCH4IV	ACGT	1 cut(s)	249
HpyCH4V	TGCA	1 cut(s)	229
HpyF10VI	GCNNNNNNNGC	1 cut(s)	349
HpySE526I	ACGT	1 cut(s)	249
Hsp92I	GRCGYC	1 cut(s)	249
Hsp92II	CATG	1 cut(s)	431
Kzo9I	GATC	3 cut(s)	347, 487, 504
LguI	GCTCTTC	1 cut(s)	450
LpnPI	CCDG	8 cut(s)	7, 28, 146, 261, 308, 433, 455, 476
Lsp1109I	GCAGC	2 cut(s)	54, 226
LweI	GCATC	2 cut(s)	130, 216
MaeI	CTAG	3 cut(s)	26, 98, 393
MaeII	ACGT	1 cut(s)	249
MalI	GATC	3 cut(s)	349, 489, 506
MboI	GATC	3 cut(s)	347, 487, 504
MboII	GAAGA	4 cut(s)	71, 102, 274, 467
MfeI	CAATTG	1 cut(s)	285
MflI	RGATCY	1 cut(s)	504
MluCI	AATT	1 cut(s)	285
MmeI	TCCRAC	1 cut(s)	345
MslI	CAYNNNNRTG	1 cut(s)	432
MspA1I	CMGCKG	1 cut(s)	223
MspI	CCGG	1 cut(s)	442
MunI	CAATTG	1 cut(s)	285
MwoI	GCNNNNNNNGC	1 cut(s)	349
NdeII	GATC	3 cut(s)	347, 487, 504
NlaIII	CATG	1 cut(s)	431
NlaIV	GGNNCC	3 cut(s)	380, 495, 506
PaeR7I	CTCGAG	1 cut(s)	169
PciSI	GCTCTTC	1 cut(s)	450
PcsI	WCGNNNNNNNCGW	2 cut(s)	255, 410
PfeI	GAWTC	3 cut(s)	18, 368, 470
PflFI	GACNNNGTC	1 cut(s)	133
PflMI	CCANNNNNTGG	1 cut(s)	21
PkrI	GCNGC	2 cut(s)	44, 241
PspN4I	GGNNCC	3 cut(s)	380, 495, 506
PspPI	GGNCC	2 cut(s)	336, 493
PstNI	CAGNNNCTG	1 cut(s)	21
PsuI	RGATCY	1 cut(s)	504
PsyI	GACNNNGTC	1 cut(s)	133
RsaI	GTAC	1 cut(s)	176
RsaNI	GTAC	1 cut(s)	175
RseI	CAYNNNNRTG	1 cut(s)	432
SapI	GCTCTTC	1 cut(s)	450
SatI	GCNGC	2 cut(s)	43, 240
Sau3AI	GATC	3 cut(s)	347, 487, 504
Sau96I	GGNCC	2 cut(s)	336, 493
SetI	ASST	6 cut(s)	8, 51, 176, 252, 270, 318
SfaNI	GCATC	2 cut(s)	130, 216
Sfr274I	CTCGAG	1 cut(s)	169
SinI	GGWCC	1 cut(s)	493
SlaI	CTCGAG	1 cut(s)	169
SmiMI	CAYNNNNRTG	1 cut(s)	432
SmlI	CTYRAG	1 cut(s)	169
SmoI	CTYRAG	1 cut(s)	169
Sse9I	AATT	1 cut(s)	285
SsiI	CCGC	4 cut(s)	213, 221, 343, 526
SspMI	CTAG	3 cut(s)	26, 98, 393
StyI	CCWWGG	2 cut(s)	64, 243
TaaI	ACNGT	3 cut(s)	235, 386, 452
TaiI	ACGT	1 cut(s)	252
TaqI	TCGA	4 cut(s)	170, 183, 204, 324
TasI	AATT	1 cut(s)	285
TfiI	GAWTC	3 cut(s)	18, 368, 470
TscAI	CASTG	1 cut(s)	391
TseI	GCWGC	2 cut(s)	42, 239
TspGWI	ACGGA	1 cut(s)	402
TspRI	CASTG	1 cut(s)	391
Tth111I	GACNNNGTC	1 cut(s)	133
Van91I	CCANNNNNTGG	1 cut(s)	21
VpaK11BI	GGWCC	1 cut(s)	493
XagI	CCTNNNNNAGG	1 cut(s)	515
XbaI	TCTAGA	1 cut(s)	97
XhoI	CTCGAG	1 cut(s)	169
XspI	CTAG	3 cut(s)	26, 98, 393
ZraI	GACGTC	1 cut(s)	250

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.