Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)
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| Species | Orthologous Gene IDs |
|---|---|
| pyrus_communis | pycom11g12230 |
| rosa_laevigata | RLG00000032395 RLG00000032400 |
| rosa_multiflora | Rmu_sc0001070.1_g000019 Rmu_sc0001405.1_g000042 Rmu_sc0029984.1_g000001 Rmu_ssc0000139.1_g000011 |
| rosa_roxburghii | Rroxscaffold_1G00058990 Rroxscaffold_5G00346380 Rroxscaffold_5G00346390 |
| rosa_rugosa | Rorug02G0178500 Rorug05G0046700 Rorug06G0177400 |
| rosa_samantha | Rh2CG235000 Rh5BG137100 Rh6CG459300 Rh6DG446200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 161 |
| AclWI | GGATC | 1 cut(s) | 21 |
| AcoI | YGGCCR | 2 cut(s) | 6, 158 |
| AcsI | RAATTY | 1 cut(s) | 75 |
| AgsI | TTSAA | 1 cut(s) | 193 |
| AjnI | CCWGG | 1 cut(s) | 180 |
| AluBI | AGCT | 1 cut(s) | 280 |
| AluI | AGCT | 1 cut(s) | 280 |
| AlwI | GGATC | 1 cut(s) | 21 |
| AoxI | GGCC | 2 cut(s) | 6, 158 |
| ApoI | RAATTY | 1 cut(s) | 75 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 246 |
| BalI | TGGCCA | 1 cut(s) | 8 |
| BciT130I | CCWGG | 1 cut(s) | 182 |
| BisI | GCNGC | 1 cut(s) | 161 |
| BlsI | GCNGC | 1 cut(s) | 162 |
| Bme1390I | CCNGG | 1 cut(s) | 182 |
| BmrFI | CCNGG | 1 cut(s) | 182 |
| BsaJI | CCNNGG | 2 cut(s) | 9, 98 |
| BseBI | CCWGG | 1 cut(s) | 182 |
| BseDI | CCNNGG | 2 cut(s) | 9, 98 |
| BseGI | GGATG | 1 cut(s) | 270 |
| BshFI | GGCC | 2 cut(s) | 8, 160 |
| BsmI | GAATGC | 1 cut(s) | 136 |
| BsnI | GGCC | 2 cut(s) | 8, 160 |
| Bsp143I | GATC | 1 cut(s) | 13 |
| BspACI | CCGC | 1 cut(s) | 161 |
| BspANI | GGCC | 2 cut(s) | 8, 160 |
| BspPI | GGATC | 1 cut(s) | 21 |
| BssECI | CCNNGG | 2 cut(s) | 9, 98 |
| BssMI | GATC | 1 cut(s) | 13 |
| Bst2UI | CCWGG | 1 cut(s) | 182 |
| Bst4CI | ACNGT | 1 cut(s) | 171 |
| BstC8I | GCNNGC | 2 cut(s) | 124, 278 |
| BstDSI | CCRYGG | 1 cut(s) | 9 |
| BstF5I | GGATG | 1 cut(s) | 270 |
| BstKTI | GATC | 1 cut(s) | 16 |
| BstMBI | GATC | 1 cut(s) | 13 |
| BstNI | CCWGG | 1 cut(s) | 182 |
| BstSCI | CCNGG | 1 cut(s) | 180 |
| BstX2I | RGATCY | 1 cut(s) | 13 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 16 |
| BstYI | RGATCY | 1 cut(s) | 13 |
| BsuRI | GGCC | 2 cut(s) | 8, 160 |
| BtgI | CCRYGG | 1 cut(s) | 9 |
| BtsCI | GGATG | 1 cut(s) | 270 |
| Cac8I | GCNNGC | 2 cut(s) | 124, 278 |
| CviAII | CATG | 2 cut(s) | 37, 50 |
| CviJI | RGCY | 6 cut(s) | 8, 122, 153, 160, 180, 280 |
| CviKI_1 | RGCY | 6 cut(s) | 8, 122, 153, 160, 180, 280 |
| DpnI | GATC | 1 cut(s) | 15 |
| DpnII | GATC | 1 cut(s) | 13 |
| DraI | TTTAAA | 1 cut(s) | 210 |
| EaeI | YGGCCR | 2 cut(s) | 6, 158 |
| EcoRII | CCWGG | 1 cut(s) | 180 |
| FaeI | CATG | 2 cut(s) | 40, 53 |
| FaiI | YATR | 5 cut(s) | 38, 51, 56, 69, 216 |
| FatI | CATG | 2 cut(s) | 36, 49 |
| Fnu4HI | GCNGC | 1 cut(s) | 161 |
| FokI | GGATG | 1 cut(s) | 277 |
| Fsp4HI | GCNGC | 1 cut(s) | 161 |
| GluI | GCNGC | 1 cut(s) | 161 |
| HaeIII | GGCC | 2 cut(s) | 8, 160 |
| Hin1II | CATG | 2 cut(s) | 40, 53 |
| HinfI | GANTC | 1 cut(s) | 91 |
| Hpy188I | TCNGA | 1 cut(s) | 238 |
| Hpy188III | TCNNGA | 1 cut(s) | 17 |
| HpyCH4III | ACNGT | 1 cut(s) | 171 |
| HpyCH4V | TGCA | 3 cut(s) | 81, 126, 276 |
| Hsp92II | CATG | 2 cut(s) | 40, 53 |
| Kzo9I | GATC | 1 cut(s) | 13 |
| LpnPI | CCDG | 6 cut(s) | 2, 67, 136, 167, 194, 230 |
| MalI | GATC | 1 cut(s) | 15 |
| MboI | GATC | 1 cut(s) | 13 |
| MflI | RGATCY | 1 cut(s) | 13 |
| MlsI | TGGCCA | 1 cut(s) | 8 |
| MluCI | AATT | 3 cut(s) | 75, 205, 292 |
| MluNI | TGGCCA | 1 cut(s) | 8 |
| MmeI | TCCRAC | 1 cut(s) | 166 |
| MnlI | CCTC | 2 cut(s) | 22, 93 |
| Mox20I | TGGCCA | 1 cut(s) | 8 |
| MroXI | GAANNNNTTC | 1 cut(s) | 246 |
| MscI | TGGCCA | 1 cut(s) | 8 |
| MseI | TTAA | 2 cut(s) | 209, 258 |
| Msp20I | TGGCCA | 1 cut(s) | 8 |
| MspA1I | CMGCKG | 1 cut(s) | 163 |
| MspR9I | CCNGG | 1 cut(s) | 182 |
| Mva1269I | GAATGC | 1 cut(s) | 136 |
| MvaI | CCWGG | 1 cut(s) | 182 |
| NdeII | GATC | 1 cut(s) | 13 |
| NlaIII | CATG | 2 cut(s) | 40, 53 |
| PctI | GAATGC | 1 cut(s) | 136 |
| PdmI | GAANNNNTTC | 1 cut(s) | 246 |
| PfeI | GAWTC | 1 cut(s) | 91 |
| PkrI | GCNGC | 1 cut(s) | 162 |
| Psp6I | CCWGG | 1 cut(s) | 180 |
| PspGI | CCWGG | 1 cut(s) | 180 |
| PsuI | RGATCY | 1 cut(s) | 13 |
| SaqAI | TTAA | 2 cut(s) | 209, 258 |
| SatI | GCNGC | 1 cut(s) | 161 |
| Sau3AI | GATC | 1 cut(s) | 13 |
| ScrFI | CCNGG | 1 cut(s) | 182 |
| SetI | ASST | 4 cut(s) | 33, 149, 249, 282 |
| Sse9I | AATT | 3 cut(s) | 75, 205, 292 |
| SsiI | CCGC | 1 cut(s) | 161 |
| StyD4I | CCNGG | 1 cut(s) | 180 |
| TaaI | ACNGT | 1 cut(s) | 171 |
| TasI | AATT | 3 cut(s) | 75, 205, 292 |
| TauI | GCSGC | 1 cut(s) | 163 |
| TfiI | GAWTC | 1 cut(s) | 91 |
| Tru1I | TTAA | 2 cut(s) | 209, 258 |
| Tru9I | TTAA | 2 cut(s) | 209, 258 |
| TspDTI | ATGAA | 4 cut(s) | 53, 104, 132, 239 |
| TspGWI | ACGGA | 2 cut(s) | 26, 277 |
| XapI | RAATTY | 1 cut(s) | 75 |
| XmnI | GAANNNNTTC | 1 cut(s) | 246 |