Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)
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| Species | Orthologous Gene IDs |
|---|---|
| pyrus_communis | pycom11g12230 |
| rosa_laevigata | RLG00000032395 RLG00000032400 |
| rosa_multiflora | Rmu_sc0001070.1_g000019 Rmu_sc0001405.1_g000042 Rmu_sc0029984.1_g000001 Rmu_ssc0000139.1_g000011 |
| rosa_roxburghii | Rroxscaffold_1G00058990 Rroxscaffold_5G00346380 Rroxscaffold_5G00346390 |
| rosa_rugosa | Rorug02G0178500 Rorug05G0046700 Rorug06G0177400 |
| rosa_samantha | Rh2CG235000 Rh5BG137100 Rh6CG459300 Rh6DG446200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 6 |
| AciI | CCGC | 2 cut(s) | 231, 239 |
| AcyI | GRCGYC | 1 cut(s) | 159 |
| AfaI | GTAC | 1 cut(s) | 194 |
| AluBI | AGCT | 3 cut(s) | 60, 67, 286 |
| AluI | AGCT | 3 cut(s) | 60, 67, 286 |
| Alw21I | GWGCWC | 1 cut(s) | 266 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 11, 43 |
| AspLEI | GCGC | 1 cut(s) | 200 |
| AsuC2I | CCSGG | 2 cut(s) | 11, 256 |
| BbsI | GAAGAC | 1 cut(s) | 19 |
| Bbv12I | GWGCWC | 1 cut(s) | 266 |
| BccI | CCATC | 1 cut(s) | 95 |
| BcnI | CCSGG | 2 cut(s) | 11, 256 |
| BfaI | CTAG | 2 cut(s) | 33, 116 |
| Bme1390I | CCNGG | 2 cut(s) | 11, 256 |
| BmrFI | CCNGG | 2 cut(s) | 11, 256 |
| BpiI | GAAGAC | 1 cut(s) | 19 |
| BpuEI | CTTGAG | 1 cut(s) | 60 |
| BpuMI | CCSGG | 2 cut(s) | 11, 256 |
| BsaHI | GRCGYC | 1 cut(s) | 159 |
| BsaJI | CCNNGG | 2 cut(s) | 82, 215 |
| Bse1I | ACTGG | 1 cut(s) | 242 |
| BseDI | CCNNGG | 2 cut(s) | 82, 215 |
| BseNI | ACTGG | 1 cut(s) | 242 |
| BsgI | GTGCAG | 1 cut(s) | 266 |
| Bsh1285I | CGRYCG | 1 cut(s) | 255 |
| BsiEI | CGRYCG | 1 cut(s) | 255 |
| BsiHKAI | GWGCWC | 1 cut(s) | 266 |
| BsiSI | CCGG | 2 cut(s) | 11, 255 |
| BslFI | GGGAC | 1 cut(s) | 32 |
| BsmFI | GGGAC | 1 cut(s) | 32 |
| Bsp1286I | GDGCHC | 1 cut(s) | 266 |
| BspACI | CCGC | 2 cut(s) | 231, 239 |
| BsrI | ACTGG | 1 cut(s) | 242 |
| BssECI | CCNNGG | 2 cut(s) | 82, 215 |
| BssNI | GRCGYC | 1 cut(s) | 159 |
| BssT1I | CCWWGG | 2 cut(s) | 82, 215 |
| Bst4CI | ACNGT | 1 cut(s) | 153 |
| BstACI | GRCGYC | 1 cut(s) | 159 |
| BstC8I | GCNNGC | 1 cut(s) | 295 |
| BstHHI | GCGC | 1 cut(s) | 200 |
| BstMCI | CGRYCG | 1 cut(s) | 255 |
| BstSCI | CCNGG | 2 cut(s) | 9, 254 |
| BstV2I | GAAGAC | 1 cut(s) | 19 |
| BtsIMutI | CAGTG | 1 cut(s) | 249 |
| Cac8I | GCNNGC | 1 cut(s) | 295 |
| CfoI | GCGC | 1 cut(s) | 200 |
| CseI | GACGC | 1 cut(s) | 167 |
| Csp6I | GTAC | 1 cut(s) | 193 |
| CviJI | RGCY | 6 cut(s) | 60, 67, 87, 125, 220, 286 |
| CviKI_1 | RGCY | 6 cut(s) | 60, 67, 87, 125, 220, 286 |
| CviQI | GTAC | 1 cut(s) | 193 |
| EciI | GGCGGA | 1 cut(s) | 220 |
| Eco130I | CCWWGG | 2 cut(s) | 82, 215 |
| EcoT14I | CCWWGG | 2 cut(s) | 82, 215 |
| ErhI | CCWWGG | 2 cut(s) | 82, 215 |
| FaiI | YATR | 1 cut(s) | 63 |
| FaqI | GGGAC | 1 cut(s) | 32 |
| FauI | CCCGC | 1 cut(s) | 246 |
| FblI | GTMKAC | 1 cut(s) | 6 |
| FspBI | CTAG | 2 cut(s) | 33, 116 |
| GlaI | GCGC | 1 cut(s) | 199 |
| HapII | CCGG | 2 cut(s) | 11, 255 |
| HgaI | GACGC | 1 cut(s) | 167 |
| HhaI | GCGC | 1 cut(s) | 200 |
| Hin1I | GRCGYC | 1 cut(s) | 159 |
| Hin6I | GCGC | 1 cut(s) | 198 |
| HinP1I | GCGC | 1 cut(s) | 198 |
| HincII | GTYRAC | 2 cut(s) | 7, 274 |
| HindII | GTYRAC | 2 cut(s) | 7, 274 |
| HinfI | GANTC | 3 cut(s) | 36, 42, 95 |
| HpaII | CCGG | 2 cut(s) | 11, 255 |
| Hpy166II | GTNNAC | 3 cut(s) | 7, 94, 274 |
| Hpy188I | TCNGA | 4 cut(s) | 41, 55, 100, 157 |
| Hpy188III | TCNNGA | 3 cut(s) | 77, 116, 187 |
| Hpy8I | GTNNAC | 3 cut(s) | 7, 94, 274 |
| Hpy99I | CGWCG | 3 cut(s) | 23, 161, 293 |
| HpyAV | CCTTC | 1 cut(s) | 60 |
| HpyCH4III | ACNGT | 1 cut(s) | 153 |
| HpyCH4IV | ACGT | 1 cut(s) | 266 |
| HpyCH4V | TGCA | 1 cut(s) | 247 |
| HpySE526I | ACGT | 1 cut(s) | 266 |
| Hsp92I | GRCGYC | 1 cut(s) | 159 |
| HspAI | GCGC | 1 cut(s) | 198 |
| LmnI | GCTCC | 1 cut(s) | 261 |
| LpnPI | CCDG | 5 cut(s) | 24, 200, 255, 268, 307 |
| MaeI | CTAG | 2 cut(s) | 33, 116 |
| MaeII | ACGT | 1 cut(s) | 266 |
| MboII | GAAGA | 2 cut(s) | 19, 120 |
| MhlI | GDGCHC | 1 cut(s) | 266 |
| MlyI | GAGTC | 2 cut(s) | 36, 89 |
| MmeI | TCCRAC | 2 cut(s) | 64, 180 |
| MnlI | CCTC | 1 cut(s) | 16 |
| MspI | CCGG | 2 cut(s) | 11, 255 |
| MspR9I | CCNGG | 2 cut(s) | 11, 256 |
| NciI | CCSGG | 2 cut(s) | 11, 256 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 51 |
| PfeI | GAWTC | 1 cut(s) | 36 |
| PflFI | GACNNNGTC | 1 cut(s) | 23 |
| PleI | GAGTC | 2 cut(s) | 36, 89 |
| PpsI | GAGTC | 2 cut(s) | 36, 89 |
| PsyI | GACNNNGTC | 1 cut(s) | 23 |
| RsaI | GTAC | 1 cut(s) | 194 |
| RsaNI | GTAC | 1 cut(s) | 193 |
| SalI | GTCGAC | 1 cut(s) | 5 |
| SchI | GAGTC | 2 cut(s) | 36, 89 |
| ScrFI | CCNGG | 2 cut(s) | 11, 256 |
| SduI | GDGCHC | 1 cut(s) | 266 |
| SetI | ASST | 5 cut(s) | 27, 62, 69, 269, 288 |
| SmlI | CTYRAG | 1 cut(s) | 75 |
| SmoI | CTYRAG | 1 cut(s) | 75 |
| SsiI | CCGC | 2 cut(s) | 231, 239 |
| SspMI | CTAG | 2 cut(s) | 33, 116 |
| StyD4I | CCNGG | 2 cut(s) | 9, 254 |
| StyI | CCWWGG | 2 cut(s) | 82, 215 |
| TaaI | ACNGT | 1 cut(s) | 153 |
| TaiI | ACGT | 1 cut(s) | 269 |
| TaqI | TCGA | 3 cut(s) | 6, 222, 302 |
| TatI | WGTACW | 1 cut(s) | 192 |
| TfiI | GAWTC | 1 cut(s) | 36 |
| TscAI | CASTG | 1 cut(s) | 249 |
| TspGWI | ACGGA | 1 cut(s) | 172 |
| TspRI | CASTG | 1 cut(s) | 249 |
| Tth111I | GACNNNGTC | 1 cut(s) | 23 |
| XbaI | TCTAGA | 1 cut(s) | 115 |
| XmiI | GTMKAC | 1 cut(s) | 6 |
| XspI | CTAG | 2 cut(s) | 33, 116 |