Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001405.1

Orthogroup ID

OG0014836

Physical Location & Seq

Genomic Coordinates Reverse (-)

173617 .. 174368

Gene Structure 752 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001405.1_g000042.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

atgttgaaacccggtgaccgtactctcagtcttagtctctccgagctgactgtcagtgctactgccacagatactagcagcgaagcaaggctattcgccaggatccgactcatcccttctgagagcaacaagctttttgctcaagaccaaggctctatggactctgatggatttgataatccggaaaagccttcttctttcgctaaaactctaacacagtccgacgccaacaatggctgcgacttcttcgtctcgaggtactgtgccgaaaccattttcccgaggctcgactactccgccgaccagccgatgcagacgaccgggtggagcacgttcgtgaaccaaaagaagctcatcgccaacaactcgattgtgttcctacatgcgagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_resp B3

Protein Analysis

130

Amino Acids

14.38

Weight (kDa)

5.29

Isoelectric Point (pI)

27.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014836)

Species	Orthologous Gene IDs
pyrus_communis	pycom11g12230
rosa_laevigata	RLG00000032395 RLG00000032400
rosa_multiflora	Rmu_sc0001070.1_g000019 Rmu_sc0001405.1_g000042 Rmu_sc0029984.1_g000001 Rmu_ssc0000139.1_g000011
rosa_roxburghii	Rroxscaffold_1G00058990 Rroxscaffold_5G00346380 Rroxscaffold_5G00346390
rosa_rugosa	Rorug02G0178500 Rorug05G0046700 Rorug06G0177400
rosa_samantha	Rh2CG235000 Rh5BG137100 Rh6CG459300 Rh6DG446200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	248
AccIII	TCCGGA	1 cut(s)	181
AciI	CCGC	1 cut(s)	297
AclWI	GGATC	2 cut(s)	97, 110
AcyI	GRCGYC	1 cut(s)	225
AfaI	GTAC	2 cut(s)	22, 260
AgsI	TTSAA	1 cut(s)	7
AjnI	CCWGG	1 cut(s)	98
AleI	CACNNNNGTG	1 cut(s)	335
AluBI	AGCT	3 cut(s)	46, 133, 352
AluI	AGCT	3 cut(s)	46, 133, 352
Alw21I	GWGCWC	1 cut(s)	332
Alw26I	GTCTC	2 cut(s)	41, 256
AlwI	GGATC	2 cut(s)	97, 110
Ama87I	CYCGRG	2 cut(s)	253, 280
Aor13HI	TCCGGA	1 cut(s)	181
ApeKI	GCWGC	2 cut(s)	78, 237
AsuC2I	CCSGG	2 cut(s)	12, 322
AsuHPI	GGTGA	1 cut(s)	26
AvaI	CYCGRG	2 cut(s)	253, 280
BamHI	GGATCC	1 cut(s)	102
Bbv12I	GWGCWC	1 cut(s)	332
BbvI	GCAGC	2 cut(s)	90, 224
BccI	CCATC	1 cut(s)	161
BciT130I	CCWGG	1 cut(s)	100
BcnI	CCSGG	2 cut(s)	12, 322
BcoDI	GTCTC	2 cut(s)	41, 256
BfaI	CTAG	1 cut(s)	75
BisI	GCNGC	2 cut(s)	79, 238
BlsI	GCNGC	2 cut(s)	80, 239
Bme1390I	CCNGG	3 cut(s)	12, 100, 322
BmeT110I	CYCGRG	2 cut(s)	253, 280
BmiI	GGNNCC	1 cut(s)	104
BmrFI	CCNGG	3 cut(s)	12, 100, 322
BmsI	GCATC	1 cut(s)	300
BpuEI	CTTGAG	1 cut(s)	126
BpuMI	CCSGG	2 cut(s)	12, 322
BsaHI	GRCGYC	1 cut(s)	225
BsaJI	CCNNGG	2 cut(s)	148, 281
BsaWI	WCCGGW	1 cut(s)	181
BseAI	TCCGGA	1 cut(s)	181
BseBI	CCWGG	1 cut(s)	100
BseDI	CCNNGG	2 cut(s)	148, 281
BseGI	GGATG	1 cut(s)	111
BseMII	CTCAG	2 cut(s)	40, 111
BseXI	GCAGC	2 cut(s)	90, 224
Bsh1285I	CGRYCG	1 cut(s)	321
BsiEI	CGRYCG	1 cut(s)	321
BsiHKAI	GWGCWC	1 cut(s)	332
BsiHKCI	CYCGRG	2 cut(s)	253, 280
BsiSI	CCGG	3 cut(s)	12, 182, 321
BsmAI	GTCTC	2 cut(s)	41, 256
BsmBI	CGTCTC	1 cut(s)	256
BsoBI	CYCGRG	2 cut(s)	253, 280
Bsp1286I	GDGCHC	1 cut(s)	332
Bsp13I	TCCGGA	1 cut(s)	181
Bsp143I	GATC	1 cut(s)	102
BspACI	CCGC	1 cut(s)	297
BspCNI	CTCAG	2 cut(s)	39, 112
BspEI	TCCGGA	1 cut(s)	181
BspLI	GGNNCC	1 cut(s)	104
BspPI	GGATC	2 cut(s)	97, 110
BssECI	CCNNGG	2 cut(s)	148, 281
BssMI	GATC	1 cut(s)	102
BssNI	GRCGYC	1 cut(s)	225
BssT1I	CCWWGG	1 cut(s)	148
Bst2UI	CCWGG	1 cut(s)	100
Bst4CI	ACNGT	4 cut(s)	20, 52, 219, 263
BstACI	GRCGYC	1 cut(s)	225
BstDEI	CTNAG	3 cut(s)	26, 32, 120
BstEII	GGTNACC	1 cut(s)	14
BstF5I	GGATG	1 cut(s)	111
BstKTI	GATC	1 cut(s)	105
BstMAI	GTCTC	2 cut(s)	41, 256
BstMBI	GATC	1 cut(s)	102
BstMCI	CGRYCG	1 cut(s)	321
BstNI	CCWGG	1 cut(s)	100
BstNSI	RCATGY	1 cut(s)	386
BstPI	GGTNACC	1 cut(s)	14
BstSCI	CCNGG	3 cut(s)	10, 98, 320
BstV1I	GCAGC	2 cut(s)	90, 224
BstX2I	RGATCY	1 cut(s)	102
BstYI	RGATCY	1 cut(s)	102
BtgZI	GCGATG	1 cut(s)	340
BtsCI	GGATG	1 cut(s)	111
BtsIMutI	CAGTG	1 cut(s)	61
CseI	GACGC	1 cut(s)	233
Csp6I	GTAC	2 cut(s)	21, 259
CviAII	CATG	1 cut(s)	383
CviJI	RGCY	9 cut(s)	46, 91, 133, 153, 190, 237, 286, 307, 352
CviKI_1	RGCY	9 cut(s)	46, 91, 133, 153, 190, 237, 286, 307, 352
CviQI	GTAC	2 cut(s)	21, 259
DdeI	CTNAG	3 cut(s)	26, 32, 120
DpnI	GATC	1 cut(s)	104
DpnII	GATC	1 cut(s)	102
DrdI	GACNNNNNNGTC	1 cut(s)	248
DseDI	GACNNNNNNGTC	1 cut(s)	248
EciI	GGCGGA	1 cut(s)	286
Eco130I	CCWWGG	1 cut(s)	148
Eco88I	CYCGRG	2 cut(s)	253, 280
Eco91I	GGTNACC	1 cut(s)	14
EcoO65I	GGTNACC	1 cut(s)	14
EcoRII	CCWGG	1 cut(s)	98
EcoT14I	CCWWGG	1 cut(s)	148
ErhI	CCWWGG	1 cut(s)	148
Esp3I	CGTCTC	1 cut(s)	256
FaeI	CATG	1 cut(s)	386
FaiI	YATR	2 cut(s)	158, 384
FatI	CATG	1 cut(s)	382
Fnu4HI	GCNGC	2 cut(s)	79, 238
FokI	GGATG	1 cut(s)	98
Fsp4HI	GCNGC	2 cut(s)	79, 238
FspBI	CTAG	1 cut(s)	75
GluI	GCNGC	2 cut(s)	79, 238
HapII	CCGG	3 cut(s)	12, 182, 321
HgaI	GACGC	1 cut(s)	233
Hin1I	GRCGYC	1 cut(s)	225
Hin1II	CATG	1 cut(s)	386
HindIII	AAGCTT	1 cut(s)	131
HinfI	GANTC	2 cut(s)	108, 161
HpaII	CCGG	3 cut(s)	12, 182, 321
HphI	GGTGA	1 cut(s)	26
Hpy166II	GTNNAC	1 cut(s)	340
Hpy188I	TCNGA	5 cut(s)	43, 107, 121, 166, 223
Hpy188III	TCNNGA	5 cut(s)	143, 182, 253, 280, 337
Hpy8I	GTNNAC	1 cut(s)	340
Hpy99I	CGWCG	1 cut(s)	227
HpyAV	CCTTC	2 cut(s)	126, 201
HpyCH4III	ACNGT	4 cut(s)	20, 52, 219, 263
HpyCH4IV	ACGT	1 cut(s)	332
HpyCH4V	TGCA	1 cut(s)	313
HpyF3I	CTNAG	3 cut(s)	26, 32, 120
HpySE526I	ACGT	1 cut(s)	332
Hsp92I	GRCGYC	1 cut(s)	225
Hsp92II	CATG	1 cut(s)	386
Kpn2I	TCCGGA	1 cut(s)	181
Kzo9I	GATC	1 cut(s)	102
LmnI	GCTCC	1 cut(s)	327
LpnPI	CCDG	6 cut(s)	25, 85, 112, 195, 317, 334
Lsp1109I	GCAGC	2 cut(s)	90, 224
LweI	GCATC	1 cut(s)	300
MaeI	CTAG	1 cut(s)	75
MaeII	ACGT	1 cut(s)	332
MaeIII	GTNAC	1 cut(s)	14
MalI	GATC	1 cut(s)	104
MboI	GATC	1 cut(s)	102
MboII	GAAGA	2 cut(s)	186, 238
MflI	RGATCY	1 cut(s)	102
MhlI	GDGCHC	1 cut(s)	332
MlyI	GAGTC	2 cut(s)	102, 155
MmeI	TCCRAC	2 cut(s)	130, 246
MnlI	CCTC	2 cut(s)	249, 276
MroI	TCCGGA	1 cut(s)	181
MslI	CAYNNNNRTG	1 cut(s)	335
MspI	CCGG	3 cut(s)	12, 182, 321
MspR9I	CCNGG	3 cut(s)	12, 100, 322
MvaI	CCWGG	1 cut(s)	100
NciI	CCSGG	2 cut(s)	12, 322
NdeII	GATC	1 cut(s)	102
NlaIII	CATG	1 cut(s)	386
NlaIV	GGNNCC	1 cut(s)	104
NmuCI	GTSAC	1 cut(s)	14
NspI	RCATGY	1 cut(s)	386
OliI	CACNNNNGTG	1 cut(s)	335
PaeR7I	CTCGAG	1 cut(s)	253
PkrI	GCNGC	2 cut(s)	80, 239
PleI	GAGTC	2 cut(s)	102, 155
PpsI	GAGTC	2 cut(s)	102, 155
Psp6I	CCWGG	1 cut(s)	98
PspEI	GGTNACC	1 cut(s)	14
PspGI	CCWGG	1 cut(s)	98
PspN4I	GGNNCC	1 cut(s)	104
PsuI	RGATCY	1 cut(s)	102
RsaI	GTAC	2 cut(s)	22, 260
RsaNI	GTAC	2 cut(s)	21, 259
RseI	CAYNNNNRTG	1 cut(s)	335
SatI	GCNGC	2 cut(s)	79, 238
Sau3AI	GATC	1 cut(s)	102
SchI	GAGTC	2 cut(s)	102, 155
ScrFI	CCNGG	3 cut(s)	12, 100, 322
SduI	GDGCHC	1 cut(s)	332
SetI	ASST	5 cut(s)	48, 135, 260, 335, 354
SfaNI	GCATC	1 cut(s)	300
Sfr274I	CTCGAG	1 cut(s)	253
SlaI	CTCGAG	1 cut(s)	253
SmiMI	CAYNNNNRTG	1 cut(s)	335
SmlI	CTYRAG	2 cut(s)	141, 253
SmoI	CTYRAG	2 cut(s)	141, 253
SsiI	CCGC	1 cut(s)	297
SspMI	CTAG	1 cut(s)	75
StyD4I	CCNGG	3 cut(s)	10, 98, 320
StyI	CCWWGG	1 cut(s)	148
TaaI	ACNGT	4 cut(s)	20, 52, 219, 263
TaiI	ACGT	1 cut(s)	335
TaqI	TCGA	3 cut(s)	254, 288, 368
TscAI	CASTG	1 cut(s)	61
TseFI	GTSAC	1 cut(s)	14
TseI	GCWGC	2 cut(s)	78, 237
Tsp45I	GTSAC	1 cut(s)	14
TspRI	CASTG	1 cut(s)	61
XceI	RCATGY	1 cut(s)	386
XhoI	CTCGAG	1 cut(s)	253
XspI	CTAG	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.