Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0014836

Physical Location & Seq

Genomic Coordinates Reverse (-)

14443441 .. 14443914

Gene Structure 474 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032400

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGAGGTCATCGCCCAGAATCTGGCTAGTCCCTTCCGAAAGCAGCGAGCTTTTTGCTGAAGACCAAGGCTATGTGGACTCTGATGGGTTTGACAATCTAGAAAAGCCTTCTTCTTTTGCTAAAACTCTGACCCAGTCCGATGCCAACAATGGCGACAGCTTCTCTGTCTCGAGGCAACCCTTGTTGGCATTTGTTGATGATTGGGTGGAGCACGTTCGTGAACCAGAAGAAGCTCGTTGCTGGTGTCTCAATTGTGTTCCTGCAAACCCAAAACTGCGACCTCTTTGTCGAGATTTGGAGGGCCAAGCGGCGATCGCAGAAGGGGTCGTCGGAATCGGGGTGGAACCACAGTGGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_resp B3

Protein Analysis

120

Amino Acids

13.26

Weight (kDa)

4.37

Isoelectric Point (pI)

54.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014836)

Species	Orthologous Gene IDs
pyrus_communis	pycom11g12230
rosa_laevigata	RLG00000032395 RLG00000032400
rosa_multiflora	Rmu_sc0001070.1_g000019 Rmu_sc0001405.1_g000042 Rmu_sc0029984.1_g000001 Rmu_ssc0000139.1_g000011
rosa_roxburghii	Rroxscaffold_1G00058990 Rroxscaffold_5G00346380 Rroxscaffold_5G00346390
rosa_rugosa	Rorug02G0178500 Rorug05G0046700 Rorug06G0177400
rosa_samantha	Rh2CG235000 Rh5BG137100 Rh6CG459300 Rh6DG446200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	285
AccB7I	CCANNNNNTGG	1 cut(s)	21
AciI	CCGC	1 cut(s)	308
AcuI	CTGAAG	1 cut(s)	78
AfiI	CCNNNNNNNGG	1 cut(s)	21
AleI	CACNNNNGTG	1 cut(s)	216
AluBI	AGCT	3 cut(s)	49, 159, 233
AluI	AGCT	3 cut(s)	49, 159, 233
Alw21I	GWGCWC	1 cut(s)	213
Alw26I	GTCTC	2 cut(s)	172, 251
AlwNI	CAGNNNCTG	1 cut(s)	21
Ama87I	CYCGRG	1 cut(s)	169
AoxI	GGCC	1 cut(s)	301
ApeKI	GCWGC	1 cut(s)	42
AsiSI	GCGATCGC	1 cut(s)	315
AspS9I	GGNCC	1 cut(s)	301
AvaI	CYCGRG	1 cut(s)	169
BbsI	GAAGAC	1 cut(s)	66
Bbv12I	GWGCWC	1 cut(s)	213
BbvI	GCAGC	1 cut(s)	54
BccI	CCATC	1 cut(s)	77
BcgI	CGANNNNNNTGC	2 cut(s)	35, 69
BcoDI	GTCTC	2 cut(s)	172, 251
BfaI	CTAG	3 cut(s)	26, 98, 358
BisI	GCNGC	2 cut(s)	43, 309
BlsI	GCNGC	2 cut(s)	44, 310
BmeT110I	CYCGRG	1 cut(s)	169
BmgT120I	GGNCC	1 cut(s)	301
BmiI	GGNNCC	1 cut(s)	345
BmrI	ACTGGG	1 cut(s)	127
BmsI	GCATC	1 cut(s)	130
BmuI	ACTGGG	1 cut(s)	127
BpiI	GAAGAC	1 cut(s)	66
BsaJI	CCNNGG	1 cut(s)	64
Bsc4I	CCNNNNNNNGG	1 cut(s)	21
Bse1I	ACTGG	1 cut(s)	133
BseDI	CCNNGG	1 cut(s)	64
BseLI	CCNNNNNNNGG	1 cut(s)	21
BseNI	ACTGG	1 cut(s)	133
BseXI	GCAGC	1 cut(s)	54
Bsh1285I	CGRYCG	1 cut(s)	315
BshFI	GGCC	1 cut(s)	303
BsiEI	CGRYCG	1 cut(s)	315
BsiHKAI	GWGCWC	1 cut(s)	213
BsiHKCI	CYCGRG	1 cut(s)	169
BslFI	GGGAC	1 cut(s)	14
BslI	CCNNNNNNNGG	1 cut(s)	21
BsmAI	GTCTC	2 cut(s)	172, 251
BsmFI	GGGAC	1 cut(s)	14
BsnI	GGCC	1 cut(s)	303
BsoBI	CYCGRG	1 cut(s)	169
Bsp1286I	GDGCHC	1 cut(s)	213
Bsp143I	GATC	1 cut(s)	312
BspACI	CCGC	1 cut(s)	308
BspANI	GGCC	1 cut(s)	303
BspLI	GGNNCC	1 cut(s)	345
BsrI	ACTGG	1 cut(s)	133
BssECI	CCNNGG	1 cut(s)	64
BssMI	GATC	1 cut(s)	312
BssT1I	CCWWGG	1 cut(s)	64
Bst4CI	ACNGT	1 cut(s)	351
BstC8I	GCNNGC	1 cut(s)	47
BstKTI	GATC	1 cut(s)	315
BstMAI	GTCTC	2 cut(s)	172, 251
BstMBI	GATC	1 cut(s)	312
BstMCI	CGRYCG	1 cut(s)	315
BstMWI	GCNNNNNNNGC	1 cut(s)	314
BstV1I	GCAGC	1 cut(s)	54
BstV2I	GAAGAC	1 cut(s)	66
BsuRI	GGCC	1 cut(s)	303
BtsIMutI	CAGTG	1 cut(s)	356
Cac8I	GCNNGC	1 cut(s)	47
CaiI	CAGNNNCTG	1 cut(s)	21
Cfr13I	GGNCC	1 cut(s)	301
CviJI	RGCY	7 cut(s)	25, 49, 69, 106, 159, 233, 303
CviKI_1	RGCY	7 cut(s)	25, 49, 69, 106, 159, 233, 303
DpnI	GATC	1 cut(s)	314
DpnII	GATC	1 cut(s)	312
DrdI	GACNNNNNNGTC	1 cut(s)	285
DseDI	GACNNNNNNGTC	1 cut(s)	285
Eco130I	CCWWGG	1 cut(s)	64
Eco57I	CTGAAG	1 cut(s)	78
Eco88I	CYCGRG	1 cut(s)	169
EcoT14I	CCWWGG	1 cut(s)	64
ErhI	CCWWGG	1 cut(s)	64
FaiI	YATR	1 cut(s)	72
FaqI	GGGAC	1 cut(s)	14
Fnu4HI	GCNGC	2 cut(s)	43, 309
Fsp4HI	GCNGC	2 cut(s)	43, 309
FspBI	CTAG	3 cut(s)	26, 98, 358
GluI	GCNGC	2 cut(s)	43, 309
HaeIII	GGCC	1 cut(s)	303
HinfI	GANTC	3 cut(s)	18, 77, 333
Hpy166II	GTNNAC	2 cut(s)	76, 221
Hpy188I	TCNGA	5 cut(s)	37, 82, 129, 139, 332
Hpy188III	TCNNGA	4 cut(s)	98, 169, 218, 290
Hpy8I	GTNNAC	2 cut(s)	76, 221
Hpy99I	CGWCG	1 cut(s)	332
HpyAV	CCTTC	3 cut(s)	42, 117, 314
HpyCH4III	ACNGT	1 cut(s)	351
HpyCH4IV	ACGT	1 cut(s)	213
HpyCH4V	TGCA	1 cut(s)	263
HpyF10VI	GCNNNNNNNGC	1 cut(s)	314
HpySE526I	ACGT	1 cut(s)	213
Kzo9I	GATC	1 cut(s)	312
LmnI	GCTCC	1 cut(s)	208
LpnPI	CCDG	6 cut(s)	7, 28, 146, 226, 237, 273
Lsp1109I	GCAGC	1 cut(s)	54
LweI	GCATC	1 cut(s)	130
MaeI	CTAG	3 cut(s)	26, 98, 358
MaeII	ACGT	1 cut(s)	213
MalI	GATC	1 cut(s)	314
MboI	GATC	1 cut(s)	312
MboII	GAAGA	3 cut(s)	71, 102, 239
MfeI	CAATTG	1 cut(s)	250
MhlI	GDGCHC	1 cut(s)	213
MluCI	AATT	1 cut(s)	250
MlyI	GAGTC	1 cut(s)	71
MmeI	TCCRAC	1 cut(s)	310
MnlI	CCTC	3 cut(s)	165, 291, 292
MslI	CAYNNNNRTG	1 cut(s)	216
MunI	CAATTG	1 cut(s)	250
MwoI	GCNNNNNNNGC	1 cut(s)	314
NdeII	GATC	1 cut(s)	312
NlaIV	GGNNCC	1 cut(s)	345
OliI	CACNNNNGTG	1 cut(s)	216
PaeR7I	CTCGAG	1 cut(s)	169
PfeI	GAWTC	2 cut(s)	18, 333
PflFI	GACNNNGTC	1 cut(s)	133
PflMI	CCANNNNNTGG	1 cut(s)	21
PkrI	GCNGC	2 cut(s)	44, 310
Ple19I	CGATCG	1 cut(s)	315
PleI	GAGTC	1 cut(s)	71
PpsI	GAGTC	1 cut(s)	71
PspN4I	GGNNCC	1 cut(s)	345
PspPI	GGNCC	1 cut(s)	301
PstNI	CAGNNNCTG	1 cut(s)	21
PsyI	GACNNNGTC	1 cut(s)	133
PvuI	CGATCG	1 cut(s)	315
RgaI	GCGATCGC	1 cut(s)	315
RseI	CAYNNNNRTG	1 cut(s)	216
SatI	GCNGC	2 cut(s)	43, 309
Sau3AI	GATC	1 cut(s)	312
Sau96I	GGNCC	1 cut(s)	301
SchI	GAGTC	1 cut(s)	71
SduI	GDGCHC	1 cut(s)	213
SetI	ASST	6 cut(s)	8, 51, 161, 216, 235, 283
SfaAI	GCGATCGC	1 cut(s)	315
SfaNI	GCATC	1 cut(s)	130
Sfr274I	CTCGAG	1 cut(s)	169
SgfI	GCGATCGC	1 cut(s)	315
SlaI	CTCGAG	1 cut(s)	169
SmiMI	CAYNNNNRTG	1 cut(s)	216
SmlI	CTYRAG	1 cut(s)	169
SmoI	CTYRAG	1 cut(s)	169
Sse9I	AATT	1 cut(s)	250
SsiI	CCGC	1 cut(s)	308
SspMI	CTAG	3 cut(s)	26, 98, 358
StyI	CCWWGG	1 cut(s)	64
TaaI	ACNGT	1 cut(s)	351
TaiI	ACGT	1 cut(s)	216
TaqI	TCGA	2 cut(s)	170, 289
TasI	AATT	1 cut(s)	250
TauI	GCSGC	1 cut(s)	311
TfiI	GAWTC	2 cut(s)	18, 333
TscAI	CASTG	1 cut(s)	356
TseI	GCWGC	1 cut(s)	42
TspRI	CASTG	1 cut(s)	356
Tth111I	GACNNNGTC	1 cut(s)	133
Van91I	CCANNNNNTGG	1 cut(s)	21
XbaI	TCTAGA	1 cut(s)	97
XhoI	CTCGAG	1 cut(s)	169
XspI	CTAG	3 cut(s)	26, 98, 358

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.