Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0016869

Physical Location & Seq

Genomic Coordinates Forward (+)

5596530 .. 5597486

Gene Structure 957 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1047900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGATGTCAACCACCATGGCTGAGCCTGAACCATTTGTTCTTCACATAAATCCGTCAGCAGTACCACAGCTTATTCATAGTGCTCATGAGCCGGCGGCTTTTGAACAGTTTGTGTTACAAATTGGACAGTCAACAGCAGCACTCCCCGCTGTACAAATTAAACCATCGGATTCTGCACCACCACCACCCCACCATGGAACAGGTATTTTAAACCTCAAGGTAGTTGAGCCAATTTTGCTACACATAAACTCATTATCACCTCCGACGCCACCTCCGCCACCGGCTGTAAACTCATTATCACCTCCGACGCCACCTCCGCCACCGGCTGTAAACTCATTATCACCTTCGACGCCACCTCCGCCACCAGCTGATACCTTAATCCCAATAACTACTACTACTACTACTCCTACTACTACTAATAATAATAATAAACCGCGCCAGAAGGTACTAAGCGCCGCGGGTAGTCTTGCGAACCTTTTACCGACGGGTACAGTTCTTGCCTTCCAAGCCGTCACACCTTCACTTTCCTTCAACGGACGGTGCCACGAGTTTAACAAGTACCTTGTGGCATTTGTTATATTAGTTTGTTCTGTCATATGTTTCGTATCCTCGTTCACTGACAGCCTGAAAGGGAAGGGCGATAAAGTATACTACGGCATTGCCACGTCCAATGGTCTTTGGGTTTTCAACAACGGCGAGATTGAAGAGAGGGAGCTGCTCGAGGAGCTGGAGAAATTGAAAGTGAAGAACAGAGACTTTCTTCATGCGTTTCTGTCGGTGTTTCTGTTTTTGATCTTTGCTTTTAGCAGCTCAGAAGTTCAAGGCTGCTACTTTCCCGAGTCAAGAGAGTTGGAATATTCACTGGCCACATATCTGCCTTTGGTTGCAGGGCTTCTCGCAACTTTCTTGTTCACCATGGTTCCCACTAAGCGTAGAGGGATTGGCTACAATTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0008150 GO:0009705 GO:0009987 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071840 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF679

Protein Analysis

319

Amino Acids

34.38

Weight (kDa)

6.24

Isoelectric Point (pI)

53.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF679	PF05078	152 - 316	2.9e-56	Protein of unknown function (DUF679)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016869)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g05190
malus_domestica	MD04G1047900.v1.1
prunus_persica	Prupe.1G204900_v2.0.a1 Prupe.1G205000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0453841
rosa_laevigata	RLG00000025498
rosa_multiflora	Rmu_sc0003556.1_g000012
rosa_roxburghii	Rroxscaffold_6G00430670
rosa_rugosa	Rorug02G0651600
rosa_samantha	Rh3AG054000 Rh3BG055400 Rh3CG054700 Rh3DG056000
rosa_wichuraiana	Rw3G004150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	540
AccI	GTMKAC	1 cut(s)	648
AccII	CGCG	2 cut(s)	436, 458
AciI	CCGC	8 cut(s)	95, 147, 275, 317, 359, 434, 456, 458
AcoI	YGGCCR	1 cut(s)	864
AcyI	GRCGYC	3 cut(s)	266, 308, 350
AfaI	GTAC	5 cut(s)	63, 153, 447, 490, 560
AfiI	CCNNNNNNNGG	1 cut(s)	194
AgsI	TTSAA	6 cut(s)	104, 532, 688, 704, 739, 821
AjiI	CACGTC	1 cut(s)	666
AluBI	AGCT	5 cut(s)	70, 368, 715, 727, 810
AluI	AGCT	5 cut(s)	70, 368, 715, 727, 810
Alw21I	GWGCWC	1 cut(s)	85
Alw26I	GTCTC	1 cut(s)	747
Ama87I	CYCGRG	2 cut(s)	719, 836
AoxI	GGCC	1 cut(s)	864
ApeKI	GCWGC	4 cut(s)	137, 715, 807, 825
AspLEI	GCGC	2 cut(s)	438, 455
AsuHPI	GGTGA	4 cut(s)	249, 291, 333, 904
AvaI	CYCGRG	2 cut(s)	719, 836
BalI	TGGCCA	1 cut(s)	866
BanI	GGYRCC	1 cut(s)	540
BauI	CACGAG	1 cut(s)	545
Bbv12I	GWGCWC	1 cut(s)	85
BbvI	GCAGC	4 cut(s)	149, 702, 812, 819
BccI	CCATC	1 cut(s)	172
BceAI	ACGGC	3 cut(s)	494, 670, 709
BciVI	GTATCC	1 cut(s)	616
BcoDI	GTCTC	1 cut(s)	747
BfoI	RGCGCY	1 cut(s)	456
BfuI	GTATCC	1 cut(s)	616
BisI	GCNGC	6 cut(s)	96, 138, 456, 716, 808, 826
BlpI	GCTNAGC	1 cut(s)	21
BlsI	GCNGC	6 cut(s)	97, 139, 457, 717, 809, 827
BmeT110I	CYCGRG	2 cut(s)	719, 836
BmgBI	CACGTC	1 cut(s)	666
BmiI	GGNNCC	2 cut(s)	542, 921
BpmI	CTGGAG	1 cut(s)	749
Bpu1102I	GCTNAGC	1 cut(s)	21
BpuEI	CTTGAG	1 cut(s)	200
BsaHI	GRCGYC	3 cut(s)	266, 308, 350
BsaJI	CCNNGG	4 cut(s)	15, 193, 456, 915
BsaXI	ACNNNNNCTCC	8 cut(s)	256, 286, 298, 328, 340, 370, 388, 418
Bsc4I	CCNNNNNNNGG	1 cut(s)	194
Bse118I	RCCGGY	3 cut(s)	91, 280, 322
Bse1I	ACTGG	1 cut(s)	867
Bse3DI	GCAATG	1 cut(s)	657
BseDI	CCNNGG	4 cut(s)	15, 193, 456, 915
BseLI	CCNNNNNNNGG	1 cut(s)	194
BseMI	GCAATG	1 cut(s)	657
BseMII	CTCAG	2 cut(s)	12, 825
BseNI	ACTGG	1 cut(s)	867
BseRI	GAGGAG	1 cut(s)	737
BseXI	GCAGC	4 cut(s)	149, 702, 812, 819
BsgI	GTGCAG	1 cut(s)	159
Bsh1236I	CGCG	2 cut(s)	436, 458
BshFI	GGCC	1 cut(s)	866
BshNI	GGYRCC	1 cut(s)	540
BsiHKAI	GWGCWC	1 cut(s)	85
BsiHKCI	CYCGRG	2 cut(s)	719, 836
BsiSI	CCGG	3 cut(s)	92, 281, 323
BslI	CCNNNNNNNGG	1 cut(s)	194
BsmAI	GTCTC	1 cut(s)	747
BsnI	GGCC	1 cut(s)	866
BsoBI	CYCGRG	2 cut(s)	719, 836
Bsp1286I	GDGCHC	1 cut(s)	85
Bsp1407I	TGTACA	1 cut(s)	151
Bsp143I	GATC	1 cut(s)	792
Bsp1720I	GCTNAGC	1 cut(s)	21
Bsp19I	CCATGG	3 cut(s)	15, 193, 915
BspACI	CCGC	8 cut(s)	95, 147, 275, 317, 359, 434, 456, 458
BspANI	GGCC	1 cut(s)	866
BspCNI	CTCAG	2 cut(s)	13, 824
BspFNI	CGCG	2 cut(s)	436, 458
BspHI	TCATGA	1 cut(s)	85
BspLI	GGNNCC	2 cut(s)	542, 921
BspT107I	GGYRCC	1 cut(s)	540
BsrDI	GCAATG	1 cut(s)	657
BsrFI	RCCGGY	3 cut(s)	91, 280, 322
BsrGI	TGTACA	1 cut(s)	151
BsrI	ACTGG	1 cut(s)	867
BssAI	RCCGGY	3 cut(s)	91, 280, 322
BssECI	CCNNGG	4 cut(s)	15, 193, 456, 915
BssMI	GATC	1 cut(s)	792
BssNAI	GTATAC	1 cut(s)	649
BssNI	GRCGYC	3 cut(s)	266, 308, 350
BssSI	CACGAG	1 cut(s)	545
BssT1I	CCWWGG	3 cut(s)	15, 193, 915
Bst1107I	GTATAC	1 cut(s)	649
Bst2BI	CACGAG	1 cut(s)	545
Bst4CI	ACNGT	4 cut(s)	108, 129, 493, 540
Bst6I	CTCTTC	1 cut(s)	699
BstACI	GRCGYC	3 cut(s)	266, 308, 350
BstAUI	TGTACA	1 cut(s)	151
BstC8I	GCNNGC	1 cut(s)	93
BstDEI	CTNAG	4 cut(s)	21, 449, 811, 927
BstDSI	CCRYGG	4 cut(s)	15, 193, 456, 915
BstFNI	CGCG	2 cut(s)	436, 458
BstH2I	RGCGCY	1 cut(s)	456
BstHHI	GCGC	2 cut(s)	438, 455
BstKTI	GATC	1 cut(s)	795
BstMAI	GTCTC	1 cut(s)	747
BstMBI	GATC	1 cut(s)	792
BstMWI	GCNNNNNNNGC	7 cut(s)	146, 235, 274, 316, 358, 506, 724
BstUI	CGCG	2 cut(s)	436, 458
BstV1I	GCAGC	4 cut(s)	149, 702, 812, 819
BstZ17I	GTATAC	1 cut(s)	649
BsuI	GTATCC	1 cut(s)	616
BsuRI	GGCC	1 cut(s)	866
BtgI	CCRYGG	4 cut(s)	15, 193, 456, 915
BtrI	CACGTC	1 cut(s)	666
BtsIMutI	CAGTG	2 cut(s)	615, 860
Cac8I	GCNNGC	1 cut(s)	93
CciI	TCATGA	1 cut(s)	85
CfoI	GCGC	2 cut(s)	438, 455
Cfr10I	RCCGGY	3 cut(s)	91, 280, 322
Cfr42I	CCGCGG	1 cut(s)	459
CseI	GACGC	3 cut(s)	274, 316, 358
Csp6I	GTAC	5 cut(s)	62, 152, 446, 489, 559
CviAII	CATG	5 cut(s)	16, 86, 194, 764, 916
CviQI	GTAC	5 cut(s)	62, 152, 446, 489, 559
DdeI	CTNAG	4 cut(s)	21, 449, 811, 927
DpnI	GATC	1 cut(s)	794
DpnII	GATC	1 cut(s)	792
DraI	TTTAAA	1 cut(s)	210
EaeI	YGGCCR	1 cut(s)	864
Eam1104I	CTCTTC	1 cut(s)	699
EarI	CTCTTC	1 cut(s)	699
EciI	GGCGGA	3 cut(s)	264, 306, 348
Eco130I	CCWWGG	3 cut(s)	15, 193, 915
Eco88I	CYCGRG	2 cut(s)	719, 836
EcoT14I	CCWWGG	3 cut(s)	15, 193, 915
ErhI	CCWWGG	3 cut(s)	15, 193, 915
FaeI	CATG	5 cut(s)	19, 89, 197, 767, 919
FatI	CATG	5 cut(s)	15, 85, 193, 763, 915
FauI	CCCGC	2 cut(s)	154, 451
FauNDI	CATATG	1 cut(s)	596
FblI	GTMKAC	1 cut(s)	648
Fnu4HI	GCNGC	6 cut(s)	96, 138, 456, 716, 808, 826
Fsp4HI	GCNGC	6 cut(s)	96, 138, 456, 716, 808, 826
GlaI	GCGC	2 cut(s)	437, 454
GluI	GCNGC	6 cut(s)	96, 138, 456, 716, 808, 826
GsuI	CTGGAG	1 cut(s)	749
HaeII	RGCGCY	1 cut(s)	456
HaeIII	GGCC	1 cut(s)	866
HapII	CCGG	3 cut(s)	92, 281, 323
HgaI	GACGC	3 cut(s)	274, 316, 358
HhaI	GCGC	2 cut(s)	438, 455
Hin1I	GRCGYC	3 cut(s)	266, 308, 350
Hin1II	CATG	5 cut(s)	19, 89, 197, 767, 919
Hin6I	GCGC	2 cut(s)	436, 453
HinP1I	GCGC	2 cut(s)	436, 453
HincII	GTYRAC	2 cut(s)	9, 132
HindII	GTYRAC	2 cut(s)	9, 132
HinfI	GANTC	2 cut(s)	170, 839
HpaII	CCGG	3 cut(s)	92, 281, 323
HphI	GGTGA	4 cut(s)	249, 291, 333, 904
Hpy166II	GTNNAC	7 cut(s)	9, 132, 289, 331, 615, 649, 912
Hpy188I	TCNGA	4 cut(s)	169, 264, 306, 814
Hpy188III	TCNNGA	3 cut(s)	86, 836, 843
Hpy8I	GTNNAC	7 cut(s)	9, 132, 289, 331, 615, 649, 912
Hpy99I	CGWCG	4 cut(s)	268, 310, 352, 487
HpyAV	CCTTC	6 cut(s)	354, 436, 511, 528, 538, 628
HpyCH4III	ACNGT	4 cut(s)	108, 129, 493, 540
HpyCH4IV	ACGT	1 cut(s)	665
HpyCH4V	TGCA	2 cut(s)	176, 887
HpyF10VI	GCNNNNNNNGC	7 cut(s)	146, 235, 274, 316, 358, 506, 724
HpyF3I	CTNAG	4 cut(s)	21, 449, 811, 927
HpySE526I	ACGT	1 cut(s)	665
Hsp92I	GRCGYC	3 cut(s)	266, 308, 350
Hsp92II	CATG	5 cut(s)	19, 89, 197, 767, 919
HspAI	GCGC	2 cut(s)	436, 453
KroI	GCCGGC	1 cut(s)	91
KroNI	GCCGGC	1 cut(s)	93
KspI	CCGCGG	1 cut(s)	459
Kzo9I	GATC	1 cut(s)	792
LmnI	GCTCC	2 cut(s)	712, 724
Lsp1109I	GCAGC	4 cut(s)	149, 702, 812, 819
MaeII	ACGT	1 cut(s)	665
MaeIII	GTNAC	2 cut(s)	114, 511
MalI	GATC	1 cut(s)	794
MboI	GATC	1 cut(s)	792
MboII	GAAGA	4 cut(s)	32, 716, 752, 757
MhlI	GDGCHC	1 cut(s)	85
MlsI	TGGCCA	1 cut(s)	866
MluCI	AATT	5 cut(s)	120, 156, 231, 734, 949
MluNI	TGGCCA	1 cut(s)	866
MlyI	GAGTC	1 cut(s)	848
MmeI	TCCRAC	3 cut(s)	287, 329, 831
Mox20I	TGGCCA	1 cut(s)	866
MroNI	GCCGGC	1 cut(s)	91
MscI	TGGCCA	1 cut(s)	866
MseI	TTAA	4 cut(s)	159, 209, 377, 552
Msp20I	TGGCCA	1 cut(s)	866
MspA1I	CMGCKG	3 cut(s)	149, 368, 458
MspI	CCGG	3 cut(s)	92, 281, 323
MvnI	CGCG	2 cut(s)	436, 458
MwoI	GCNNNNNNNGC	7 cut(s)	146, 235, 274, 316, 358, 506, 724
NaeI	GCCGGC	1 cut(s)	93
NcoI	CCATGG	3 cut(s)	15, 193, 915
NdeI	CATATG	1 cut(s)	596
NdeII	GATC	1 cut(s)	792
NgoMIV	GCCGGC	1 cut(s)	91
NlaIII	CATG	5 cut(s)	19, 89, 197, 767, 919
NlaIV	GGNNCC	2 cut(s)	542, 921
NmuCI	GTSAC	1 cut(s)	511
PaeR7I	CTCGAG	1 cut(s)	719
PagI	TCATGA	1 cut(s)	85
PdiI	GCCGGC	1 cut(s)	93
PfeI	GAWTC	1 cut(s)	170
PkrI	GCNGC	6 cut(s)	97, 139, 457, 717, 809, 827
PleI	GAGTC	1 cut(s)	847
PpsI	GAGTC	1 cut(s)	847
PspN4I	GGNNCC	2 cut(s)	542, 921
PspXI	VCTCGAGB	1 cut(s)	719
PvuII	CAGCTG	1 cut(s)	368
RsaI	GTAC	5 cut(s)	63, 153, 447, 490, 560
RsaNI	GTAC	5 cut(s)	62, 152, 446, 489, 559
SacII	CCGCGG	1 cut(s)	459
SaqAI	TTAA	4 cut(s)	159, 209, 377, 552
SatI	GCNGC	6 cut(s)	96, 138, 456, 716, 808, 826
Sau3AI	GATC	1 cut(s)	792
SchI	GAGTC	1 cut(s)	848
SduI	GDGCHC	1 cut(s)	85
Sfr274I	CTCGAG	1 cut(s)	719
Sfr303I	CCGCGG	1 cut(s)	459
SgrBI	CCGCGG	1 cut(s)	459
SlaI	CTCGAG	1 cut(s)	719
SmlI	CTYRAG	2 cut(s)	215, 719
SmoI	CTYRAG	2 cut(s)	215, 719
Sse9I	AATT	5 cut(s)	120, 156, 231, 734, 949
SsiI	CCGC	8 cut(s)	95, 147, 275, 317, 359, 434, 456, 458
SspI	AATATT	1 cut(s)	857
StyI	CCWWGG	3 cut(s)	15, 193, 915
TaaI	ACNGT	4 cut(s)	108, 129, 493, 540
TaiI	ACGT	1 cut(s)	668
TaqI	TCGA	2 cut(s)	347, 720
TasI	AATT	5 cut(s)	120, 156, 231, 734, 949
TatI	WGTACW	1 cut(s)	151
TauI	GCSGC	2 cut(s)	98, 458
TfiI	GAWTC	1 cut(s)	170
Tru1I	TTAA	4 cut(s)	159, 209, 377, 552
Tru9I	TTAA	4 cut(s)	159, 209, 377, 552
TscAI	CASTG	2 cut(s)	622, 867
TseFI	GTSAC	1 cut(s)	511
TseI	GCWGC	4 cut(s)	137, 715, 807, 825
Tsp45I	GTSAC	1 cut(s)	511
TspDTI	ATGAA	2 cut(s)	65, 752
TspGWI	ACGGA	2 cut(s)	42, 549
TspRI	CASTG	2 cut(s)	622, 867
XhoI	CTCGAG	1 cut(s)	719
XmiI	GTMKAC	1 cut(s)	648

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.