Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0016869

Physical Location & Seq

Genomic Coordinates Forward (+)

50774724 .. 50775632

Gene Structure 909 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00430670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGGCTGAACCGTTTGTTCAACACATAAACTCATCGTCATCAACACCAGTAGCAAACTCTGCGGCGGCCGCCTCATTAGTCCGGTCAATGGCAGATCAACAGATTGTGTTACAAATTGGACAACTATCAAGTTCAACACCACCACTACCACCACCTCATGATGAACAAACCAAATCAGCAGCACCAGCATCACACCATGGTACCTTAAACCTCAGGGTAACTGAGCCGATTTTGCTACACATAAACTCGTTAACACCACTTCTCAATAACCAACCAATTAGTACTCAATCAACACCAACACCACCACCAAAAGACCAAGAAACCTCTAATCCACCGACTGATATTGCACAATCTTTGAAAGGCACAAAGCACCAAAAGGCACTTAGCAAGATGGGAAGTCTGGCAAACCTGTTACCCACAGGCACTGTTCTTGCATTCCAAGCCATCACGCCTTCCCTTTCCTACAACGGTAGATGCCACATCTTCAACAAGTACCTTGTTGCATTCGTCATGCTGGCTTGCTCTCTCGTTTGCTTCGTCTCTTCCTTCACCGACAGCCTAGAATATGAGCAGAAAGTGTACTATGGCATTGCAACATTCAACGGGCTTTCAGTTTTCAACTATGAACGTCGTGAAGTTGAAGAAAAAGCTCTTGAGGATAAGCTGAAGTCGCTGAAGCTTACACCCAGGGACTATCTTCATGCGTTTCTCTCGGTTTTTGTGTTCTTGATATTTGCTTGTAGCAGCTTAGAGGTGCAGACCTGCTACTTTCCTGCTGGAATAAGAGATCAGTTGGAGTATTCGATGGTGATATATTTGCCTTTGGTCGTTGGATTGCTGTCAAGTTTCTTGTTCACCCATTTCCCTACTAACCGTAGAGGGATTGGCTACACCTGCACCAGAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0008150 GO:0009705 GO:0009987 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071840 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF679

Protein Analysis

302

Amino Acids

33.22

Weight (kDa)

7.66

Isoelectric Point (pI)

46.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF679	PF05078	130 - 297	2e-52	Protein of unknown function (DUF679)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0016869)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g05190
malus_domestica	MD04G1047900.v1.1
prunus_persica	Prupe.1G204900_v2.0.a1 Prupe.1G205000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0453841
rosa_laevigata	RLG00000025498
rosa_multiflora	Rmu_sc0003556.1_g000012
rosa_roxburghii	Rroxscaffold_6G00430670
rosa_rugosa	Rorug02G0651600
rosa_samantha	Rh3AG054000 Rh3BG055400 Rh3CG054700 Rh3DG056000
rosa_wichuraiana	Rw3G004150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	902
Acc36I	ACCTGC	2 cut(s)	770, 902
Acc65I	GGTACC	1 cut(s)	200
AccB1I	GGYRCC	1 cut(s)	200
AciI	CCGC	3 cut(s)	62, 65, 69
AcoI	YGGCCR	1 cut(s)	66
AcuI	CTGAAG	2 cut(s)	686, 695
AfaI	GTAC	4 cut(s)	202, 283, 494, 581
AfiI	CCNNNNNNNGG	1 cut(s)	88
AgsI	TTSAA	7 cut(s)	20, 135, 358, 487, 601, 619, 641
AjnI	CCWGG	1 cut(s)	686
AluBI	AGCT	4 cut(s)	650, 664, 679, 747
AluI	AGCT	4 cut(s)	650, 664, 679, 747
Alw26I	GTCTC	1 cut(s)	544
AlwNI	CAGNNNCTG	1 cut(s)	425
AoxI	GGCC	1 cut(s)	66
ApeKI	GCWGC	2 cut(s)	179, 744
Asp718I	GGTACC	1 cut(s)	200
AsuHPI	GGTGA	3 cut(s)	541, 820, 847
AxyI	CCTNAGG	1 cut(s)	212
BaeI	ACNNNNGTAYC	2 cut(s)	184, 217
BanI	GGYRCC	1 cut(s)	200
BbvI	GCAGC	2 cut(s)	191, 756
BccI	CCATC	3 cut(s)	385, 452, 799
BciT130I	CCWGG	1 cut(s)	688
BcoDI	GTCTC	1 cut(s)	544
BfaI	CTAG	1 cut(s)	560
BfuAI	ACCTGC	2 cut(s)	770, 902
BisI	GCNGC	5 cut(s)	63, 66, 69, 180, 745
BlsI	GCNGC	5 cut(s)	64, 67, 70, 181, 746
BmcAI	AGTACT	1 cut(s)	283
Bme1390I	CCNGG	1 cut(s)	688
BmiI	GGNNCC	1 cut(s)	202
BmrFI	CCNGG	1 cut(s)	688
BmsI	GCATC	2 cut(s)	197, 464
BpuEI	CTTGAG	1 cut(s)	674
BsaJI	CCNNGG	3 cut(s)	196, 686, 687
BsaWI	WCCGGW	1 cut(s)	81
Bsc4I	CCNNNNNNNGG	1 cut(s)	88
Bse1I	ACTGG	1 cut(s)	47
Bse21I	CCTNAGG	1 cut(s)	212
Bse3DI	GCAATG	1 cut(s)	588
BseBI	CCWGG	1 cut(s)	688
BseDI	CCNNGG	3 cut(s)	196, 686, 687
BseLI	CCNNNNNNNGG	1 cut(s)	88
BseMI	GCAATG	1 cut(s)	588
BseMII	CTCAG	2 cut(s)	213, 226
BseNI	ACTGG	1 cut(s)	47
BseX3I	CGGCCG	1 cut(s)	66
BseXI	GCAGC	2 cut(s)	191, 756
BsgI	GTGCAG	2 cut(s)	776, 880
Bsh1285I	CGRYCG	1 cut(s)	69
BshFI	GGCC	1 cut(s)	68
BshNI	GGYRCC	1 cut(s)	200
BsiEI	CGRYCG	1 cut(s)	69
BsiSI	CCGG	1 cut(s)	82
BslFI	GGGAC	1 cut(s)	704
BslI	CCNNNNNNNGG	1 cut(s)	88
BsmAI	GTCTC	1 cut(s)	544
BsmBI	CGTCTC	1 cut(s)	544
BsmFI	GGGAC	1 cut(s)	704
BsmI	GAATGC	2 cut(s)	434, 503
BsnI	GGCC	1 cut(s)	68
Bsp143I	GATC	2 cut(s)	94, 787
Bsp19I	CCATGG	1 cut(s)	196
BspACI	CCGC	3 cut(s)	62, 65, 69
BspANI	GGCC	1 cut(s)	68
BspCNI	CTCAG	2 cut(s)	214, 225
BspHI	TCATGA	1 cut(s)	157
BspLI	GGNNCC	1 cut(s)	202
BspMI	ACCTGC	2 cut(s)	770, 902
BspT107I	GGYRCC	1 cut(s)	200
BsrDI	GCAATG	1 cut(s)	588
BsrI	ACTGG	1 cut(s)	47
BssECI	CCNNGG	3 cut(s)	196, 686, 687
BssMI	GATC	2 cut(s)	94, 787
BssT1I	CCWWGG	1 cut(s)	196
Bst2UI	CCWGG	1 cut(s)	688
Bst4CI	ACNGT	4 cut(s)	12, 427, 470, 875
Bst6I	CTCTTC	1 cut(s)	547
BstAPI	GCANNNNNTGC	1 cut(s)	59
BstC8I	GCNNGC	2 cut(s)	516, 520
BstDEI	CTNAG	4 cut(s)	212, 222, 383, 748
BstDSI	CCRYGG	1 cut(s)	196
BstKTI	GATC	2 cut(s)	97, 790
BstMAI	GTCTC	1 cut(s)	544
BstMBI	GATC	2 cut(s)	94, 787
BstMCI	CGRYCG	1 cut(s)	69
BstMWI	GCNNNNNNNGC	7 cut(s)	59, 68, 185, 232, 440, 670, 894
BstNI	CCWGG	1 cut(s)	688
BstSCI	CCNGG	1 cut(s)	686
BstV1I	GCAGC	2 cut(s)	191, 756
BstZI	CGGCCG	1 cut(s)	66
Bsu36I	CCTNAGG	1 cut(s)	212
BsuRI	GGCC	1 cut(s)	68
BtgI	CCRYGG	1 cut(s)	196
BtsIMutI	CAGTG	1 cut(s)	423
BveI	ACCTGC	2 cut(s)	770, 902
Cac8I	GCNNGC	2 cut(s)	516, 520
CaiI	CAGNNNCTG	1 cut(s)	425
CciI	TCATGA	1 cut(s)	157
CciNI	GCGGCCGC	1 cut(s)	66
Csp6I	GTAC	4 cut(s)	201, 282, 493, 580
CviAII	CATG	5 cut(s)	158, 197, 511, 701, 906
CviQI	GTAC	4 cut(s)	201, 282, 493, 580
DdeI	CTNAG	4 cut(s)	212, 222, 383, 748
DpnI	GATC	2 cut(s)	96, 789
DpnII	GATC	2 cut(s)	94, 787
EaeI	YGGCCR	1 cut(s)	66
EagI	CGGCCG	1 cut(s)	66
Eam1104I	CTCTTC	1 cut(s)	547
EarI	CTCTTC	1 cut(s)	547
EclXI	CGGCCG	1 cut(s)	66
Eco130I	CCWWGG	1 cut(s)	196
Eco52I	CGGCCG	1 cut(s)	66
Eco57I	CTGAAG	2 cut(s)	686, 695
Eco81I	CCTNAGG	1 cut(s)	212
EcoRII	CCWGG	1 cut(s)	686
EcoT14I	CCWWGG	1 cut(s)	196
ErhI	CCWWGG	1 cut(s)	196
Esp3I	CGTCTC	1 cut(s)	544
FaeI	CATG	5 cut(s)	161, 200, 514, 704, 909
FaqI	GGGAC	1 cut(s)	704
FatI	CATG	5 cut(s)	157, 196, 510, 700, 905
Fnu4HI	GCNGC	5 cut(s)	63, 66, 69, 180, 745
Fsp4HI	GCNGC	5 cut(s)	63, 66, 69, 180, 745
FspBI	CTAG	1 cut(s)	560
GluI	GCNGC	5 cut(s)	63, 66, 69, 180, 745
HaeIII	GGCC	1 cut(s)	68
HapII	CCGG	1 cut(s)	82
Hin1II	CATG	5 cut(s)	161, 200, 514, 704, 909
HincII	GTYRAC	1 cut(s)	252
HindII	GTYRAC	1 cut(s)	252
HindIII	AAGCTT	1 cut(s)	677
HpaI	GTTAAC	1 cut(s)	252
HpaII	CCGG	1 cut(s)	82
HphI	GGTGA	3 cut(s)	541, 820, 847
Hpy166II	GTNNAC	3 cut(s)	252, 580, 855
Hpy188III	TCNNGA	4 cut(s)	158, 632, 653, 727
Hpy8I	GTNNAC	3 cut(s)	252, 580, 855
Hpy99I	CGWCG	1 cut(s)	633
HpyAV	CCTTC	2 cut(s)	462, 556
HpyCH4III	ACNGT	4 cut(s)	12, 427, 470, 875
HpyCH4IV	ACGT	1 cut(s)	628
HpyCH4V	TGCA	6 cut(s)	347, 434, 503, 593, 757, 897
HpyF10VI	GCNNNNNNNGC	7 cut(s)	59, 68, 185, 232, 440, 670, 894
HpyF3I	CTNAG	4 cut(s)	212, 222, 383, 748
HpySE526I	ACGT	1 cut(s)	628
Hsp92II	CATG	5 cut(s)	161, 200, 514, 704, 909
KpnI	GGTACC	1 cut(s)	204
KspAI	GTTAAC	1 cut(s)	252
Kzo9I	GATC	2 cut(s)	94, 787
Lsp1109I	GCAGC	2 cut(s)	191, 756
LweI	GCATC	2 cut(s)	197, 464
MaeI	CTAG	1 cut(s)	560
MaeII	ACGT	1 cut(s)	628
MaeIII	GTNAC	3 cut(s)	108, 217, 411
MalI	GATC	2 cut(s)	96, 789
MboI	GATC	2 cut(s)	94, 787
MboII	GAAGA	4 cut(s)	475, 534, 653, 689
MluCI	AATT	2 cut(s)	114, 276
MmeI	TCCRAC	2 cut(s)	774, 811
MnlI	CCTC	7 cut(s)	82, 165, 221, 334, 649, 745, 872
MseI	TTAA	2 cut(s)	206, 251
MspI	CCGG	1 cut(s)	82
MspR9I	CCNGG	1 cut(s)	688
Mva1269I	GAATGC	2 cut(s)	434, 503
MvaI	CCWGG	1 cut(s)	688
MwoI	GCNNNNNNNGC	7 cut(s)	59, 68, 185, 232, 440, 670, 894
NcoI	CCATGG	1 cut(s)	196
NdeII	GATC	2 cut(s)	94, 787
NlaIII	CATG	5 cut(s)	161, 200, 514, 704, 909
NlaIV	GGNNCC	1 cut(s)	202
NotI	GCGGCCGC	1 cut(s)	66
PagI	TCATGA	1 cut(s)	157
PaqCI	CACCTGC	1 cut(s)	902
PasI	CCCWGGG	1 cut(s)	687
PcsI	WCGNNNNNNNCGW	1 cut(s)	534
PctI	GAATGC	2 cut(s)	434, 503
PkrI	GCNGC	5 cut(s)	64, 67, 70, 181, 746
Psp6I	CCWGG	1 cut(s)	686
PspGI	CCWGG	1 cut(s)	686
PspN4I	GGNNCC	1 cut(s)	202
PstNI	CAGNNNCTG	1 cut(s)	425
RsaI	GTAC	4 cut(s)	202, 283, 494, 581
RsaNI	GTAC	4 cut(s)	201, 282, 493, 580
SaqAI	TTAA	2 cut(s)	206, 251
SatI	GCNGC	5 cut(s)	63, 66, 69, 180, 745
Sau3AI	GATC	2 cut(s)	94, 787
ScaI	AGTACT	1 cut(s)	283
ScrFI	CCNGG	1 cut(s)	688
SfaNI	GCATC	2 cut(s)	197, 464
SmlI	CTYRAG	1 cut(s)	653
SmoI	CTYRAG	1 cut(s)	653
Sse9I	AATT	2 cut(s)	114, 276
SsiI	CCGC	3 cut(s)	62, 65, 69
SspMI	CTAG	1 cut(s)	560
StyD4I	CCNGG	1 cut(s)	686
StyI	CCWWGG	1 cut(s)	196
TaaI	ACNGT	4 cut(s)	12, 427, 470, 875
TaiI	ACGT	1 cut(s)	631
TaqI	TCGA	1 cut(s)	803
TasI	AATT	2 cut(s)	114, 276
TatI	WGTACW	2 cut(s)	281, 579
TauI	GCSGC	3 cut(s)	65, 68, 71
Tru1I	TTAA	2 cut(s)	206, 251
Tru9I	TTAA	2 cut(s)	206, 251
TscAI	CASTG	1 cut(s)	430
TseI	GCWGC	2 cut(s)	179, 744
TspDTI	ATGAA	3 cut(s)	177, 639, 689
TspRI	CASTG	1 cut(s)	430
XspI	CTAG	1 cut(s)	560
ZrmI	AGTACT	1 cut(s)	283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.