RLG00000025498

Protein of unknown function (DUF679)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0016869
Physical Location & Seq
Reverse (-)
46157689 .. 46158580
892 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025498

Sequence Viewer

Length: 744 bp
ATGGCTGAACCGTTTGTTCAACACATAAACTCATCGTCATCAACACCAGTAGCAAACTCTGCGTCGGCCGCCTCATTATTCCGTTCAATGGCAGATCAACAGATTGTGTTACAAATTGGACAACTATCAAGTTCAACACCACCACCACCACCTGATGATGAACAAAGCAAATCAGCAGCGCCAGCATCACACCATGGTACCTTAAACCTCAGGGCACTTAGCAAGATGGGAAGCCTGGCAAACCTGTTACCCACAGGCACTGTTCTTGCATTCCAAGCCATCACGCCTTCCCTTTCCTACAACGGTAGATGCCACATCTTCAACAAGTACCTTGTGGCATTCGTCATGCTAGCTTGTTCTCTCGTTTGCTTCGTCTCTTCCTTCACCGACAGCCTGGAATATGAGCAGAAAGTGTACTATGGCATTGCAACATTCAACGGGCTTTCAGTTTTCAACTATGAATGCCGTGAGGTTGAAGAAAAAGCTCTTAAGGATAAGCTGAAGTCGCTGAAGATTACACCCAGGGACTATCTTCATGCATTTCTCTCGGTTTTTGTGTTCTTGATATTTGCTTGTAGCAGCTTAGAGGTGCAGACCTGCTACTTTCCGGCTGGAATAAGAGATCAGTTGGAGTATTCGATGGTGATATATTTGCCTTTGGTCGTTGGATTGCTGTCAAGTTTCTTGTTCACCCATTTCCCTACTAACCGTAGAGGGATTGGCTACACATGCACCAGAACATGA

Protein Analysis

248

Amino Acids

27.23

Weight (kDa)

7.6

Isoelectric Point (pI)

45.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF679 PF05078 75 - 242 4.9e-52 Protein of unknown function (DUF679)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016869)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g05190
malus_domestica MD04G1047900.v1.1
prunus_persica Prupe.1G204900_v2.0.a1 Prupe.1G205000_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0453841
rosa_laevigata RLG00000025498
rosa_multiflora Rmu_sc0003556.1_g000012
rosa_roxburghii Rroxscaffold_6G00430670
rosa_rugosa Rorug02G0651600
rosa_samantha Rh3AG054000 Rh3BG055400 Rh3CG054700 Rh3DG056000
rosa_wichuraiana Rw3G004150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 605
Acc65I GGTACC 1 cut(s) 197
AccB1I GGYRCC 1 cut(s) 197
AciI CCGC 1 cut(s) 69
AcoI YGGCCR 1 cut(s) 66
AcuI CTGAAG 2 cut(s) 521, 530
AfaI GTAC 3 cut(s) 199, 329, 416
AfiI CCNNNNNNNGG 1 cut(s) 88
AflII CTTAAG 1 cut(s) 488
AgsI TTSAA 7 cut(s) 20, 87, 135, 322, 436, 454, 476
AjnI CCWGG 3 cut(s) 234, 393, 521
AluBI AGCT 4 cut(s) 353, 485, 499, 582
AluI AGCT 4 cut(s) 353, 485, 499, 582
Alw26I GTCTC 1 cut(s) 379
AlwNI CAGNNNCTG 1 cut(s) 260
AoxI GGCC 1 cut(s) 66
ApeKI GCWGC 2 cut(s) 176, 579
ArsI GACNNNNNNTTYG 2 cut(s) 47, 79
Asp718I GGTACC 1 cut(s) 197
AspLEI GCGC 1 cut(s) 181
AsuHPI GGTGA 3 cut(s) 376, 655, 682
AsuNHI GCTAGC 1 cut(s) 349
AxyI CCTNAGG 1 cut(s) 209
BaeGI GKGCMC 1 cut(s) 217
BaeI ACNNNNGTAYC 2 cut(s) 181, 214
BanI GGYRCC 1 cut(s) 197
BbvI GCAGC 2 cut(s) 188, 591
BccI CCATC 3 cut(s) 220, 287, 634
BceAI ACGGC 1 cut(s) 450
BcgI CGANNNNNNTGC 2 cut(s) 528, 562
BciT130I CCWGG 3 cut(s) 236, 395, 523
BcoDI GTCTC 1 cut(s) 379
BfaI CTAG 1 cut(s) 350
BfoI RGCGCY 1 cut(s) 182
BfrI CTTAAG 1 cut(s) 488
BfuAI ACCTGC 1 cut(s) 605
BisI GCNGC 3 cut(s) 69, 177, 580
BlsI GCNGC 3 cut(s) 70, 178, 581
Bme1390I CCNGG 3 cut(s) 236, 395, 523
BmiI GGNNCC 1 cut(s) 199
BmrFI CCNGG 3 cut(s) 236, 395, 523
BmsI GCATC 2 cut(s) 194, 299
BmtI GCTAGC 1 cut(s) 353
BsaJI CCNNGG 3 cut(s) 193, 521, 522
Bsc4I CCNNNNNNNGG 1 cut(s) 88
Bse1I ACTGG 1 cut(s) 47
Bse21I CCTNAGG 1 cut(s) 209
Bse3DI GCAATG 1 cut(s) 423
BseBI CCWGG 3 cut(s) 236, 395, 523
BseDI CCNNGG 3 cut(s) 193, 521, 522
BseLI CCNNNNNNNGG 1 cut(s) 88
BseMI GCAATG 1 cut(s) 423
BseMII CTCAG 1 cut(s) 223
BseNI ACTGG 1 cut(s) 47
BseSI GKGCMC 1 cut(s) 217
BseX3I CGGCCG 1 cut(s) 66
BseXI GCAGC 2 cut(s) 188, 591
BsgI GTGCAG 1 cut(s) 611
Bsh1285I CGRYCG 1 cut(s) 69
BshFI GGCC 1 cut(s) 68
BshNI GGYRCC 1 cut(s) 197
BsiEI CGRYCG 1 cut(s) 69
BsiSI CCGG 1 cut(s) 608
BslFI GGGAC 1 cut(s) 539
BslI CCNNNNNNNGG 1 cut(s) 88
BsmAI GTCTC 1 cut(s) 379
BsmBI CGTCTC 1 cut(s) 379
BsmFI GGGAC 1 cut(s) 539
BsmI GAATGC 3 cut(s) 269, 338, 467
BsnI GGCC 1 cut(s) 68
Bsp1286I GDGCHC 1 cut(s) 217
Bsp143I GATC 2 cut(s) 94, 622
Bsp19I CCATGG 1 cut(s) 193
BspACI CCGC 1 cut(s) 69
BspANI GGCC 1 cut(s) 68
BspCNI CTCAG 1 cut(s) 222
BspLI GGNNCC 1 cut(s) 199
BspMI ACCTGC 1 cut(s) 605
BspOI GCTAGC 1 cut(s) 353
BspT107I GGYRCC 1 cut(s) 197
BspTI CTTAAG 1 cut(s) 488
BsrDI GCAATG 1 cut(s) 423
BsrI ACTGG 1 cut(s) 47
BssECI CCNNGG 3 cut(s) 193, 521, 522
BssMI GATC 2 cut(s) 94, 622
BssT1I CCWWGG 1 cut(s) 193
Bst2UI CCWGG 3 cut(s) 236, 395, 523
Bst4CI ACNGT 4 cut(s) 12, 262, 305, 710
Bst6I CTCTTC 1 cut(s) 382
BstAFI CTTAAG 1 cut(s) 488
BstAPI GCANNNNNTGC 1 cut(s) 59
BstC8I GCNNGC 2 cut(s) 183, 351
BstDEI CTNAG 3 cut(s) 209, 218, 583
BstDSI CCRYGG 1 cut(s) 193
BstH2I RGCGCY 1 cut(s) 182
BstHHI GCGC 1 cut(s) 181
BstKTI GATC 2 cut(s) 97, 625
BstMAI GTCTC 1 cut(s) 379
BstMBI GATC 2 cut(s) 94, 622
BstMCI CGRYCG 1 cut(s) 69
BstMWI GCNNNNNNNGC 6 cut(s) 59, 68, 182, 275, 505, 729
BstNI CCWGG 3 cut(s) 236, 395, 523
BstNSI RCATGY 1 cut(s) 732
BstSCI CCNGG 3 cut(s) 234, 393, 521
BstSLI GKGCMC 1 cut(s) 217
BstV1I GCAGC 2 cut(s) 188, 591
BstZI CGGCCG 1 cut(s) 66
Bsu36I CCTNAGG 1 cut(s) 209
BsuRI GGCC 1 cut(s) 68
BtgI CCRYGG 1 cut(s) 193
BtsIMutI CAGTG 1 cut(s) 258
BveI ACCTGC 1 cut(s) 605
Cac8I GCNNGC 2 cut(s) 183, 351
CaiI CAGNNNCTG 1 cut(s) 260
CfoI GCGC 1 cut(s) 181
CseI GACGC 1 cut(s) 51
Csp6I GTAC 3 cut(s) 198, 328, 415
CviAII CATG 5 cut(s) 194, 346, 536, 729, 741
CviQI GTAC 3 cut(s) 198, 328, 415
DdeI CTNAG 3 cut(s) 209, 218, 583
DpnI GATC 2 cut(s) 96, 624
DpnII GATC 2 cut(s) 94, 622
EaeI YGGCCR 1 cut(s) 66
EagI CGGCCG 1 cut(s) 66
Eam1104I CTCTTC 1 cut(s) 382
EarI CTCTTC 1 cut(s) 382
EclXI CGGCCG 1 cut(s) 66
Eco130I CCWWGG 1 cut(s) 193
Eco52I CGGCCG 1 cut(s) 66
Eco57I CTGAAG 2 cut(s) 521, 530
Eco81I CCTNAGG 1 cut(s) 209
EcoRII CCWGG 3 cut(s) 234, 393, 521
EcoT14I CCWWGG 1 cut(s) 193
EcoT22I ATGCAT 1 cut(s) 541
ErhI CCWWGG 1 cut(s) 193
Esp3I CGTCTC 1 cut(s) 379
FaeI CATG 5 cut(s) 197, 349, 539, 732, 744
FaqI GGGAC 1 cut(s) 539
FatI CATG 5 cut(s) 193, 345, 535, 728, 740
Fnu4HI GCNGC 3 cut(s) 69, 177, 580
Fsp4HI GCNGC 3 cut(s) 69, 177, 580
FspBI CTAG 1 cut(s) 350
GlaI GCGC 1 cut(s) 180
GluI GCNGC 3 cut(s) 69, 177, 580
HaeII RGCGCY 1 cut(s) 182
HaeIII GGCC 1 cut(s) 68
HapII CCGG 1 cut(s) 608
HgaI GACGC 1 cut(s) 51
HhaI GCGC 1 cut(s) 181
Hin1II CATG 5 cut(s) 197, 349, 539, 732, 744
Hin6I GCGC 1 cut(s) 179
HinP1I GCGC 1 cut(s) 179
HpaII CCGG 1 cut(s) 608
HphI GGTGA 3 cut(s) 376, 655, 682
Hpy166II GTNNAC 2 cut(s) 415, 690
Hpy188III TCNNGA 1 cut(s) 562
Hpy8I GTNNAC 2 cut(s) 415, 690
Hpy99I CGWCG 1 cut(s) 67
HpyAV CCTTC 2 cut(s) 297, 391
HpyCH4III ACNGT 4 cut(s) 12, 262, 305, 710
HpyCH4V TGCA 5 cut(s) 269, 428, 539, 592, 732
HpyF10VI GCNNNNNNNGC 6 cut(s) 59, 68, 182, 275, 505, 729
HpyF3I CTNAG 3 cut(s) 209, 218, 583
Hsp92II CATG 5 cut(s) 197, 349, 539, 732, 744
HspAI GCGC 1 cut(s) 179
KpnI GGTACC 1 cut(s) 201
Kzo9I GATC 2 cut(s) 94, 622
Lsp1109I GCAGC 2 cut(s) 188, 591
LweI GCATC 2 cut(s) 194, 299
MaeI CTAG 1 cut(s) 350
MaeIII GTNAC 2 cut(s) 108, 246
MalI GATC 2 cut(s) 96, 624
MboI GATC 2 cut(s) 94, 622
MboII GAAGA 5 cut(s) 310, 369, 488, 523, 524
MhlI GDGCHC 1 cut(s) 217
MluCI AATT 1 cut(s) 114
MmeI TCCRAC 2 cut(s) 609, 646
MnlI CCTC 5 cut(s) 82, 218, 463, 580, 707
Mph1103I ATGCAT 1 cut(s) 541
MseI TTAA 2 cut(s) 203, 489
MspCI CTTAAG 1 cut(s) 488
MspI CCGG 1 cut(s) 608
MspR9I CCNGG 3 cut(s) 236, 395, 523
Mva1269I GAATGC 3 cut(s) 269, 338, 467
MvaI CCWGG 3 cut(s) 236, 395, 523
MwoI GCNNNNNNNGC 6 cut(s) 59, 68, 182, 275, 505, 729
NcoI CCATGG 1 cut(s) 193
NdeII GATC 2 cut(s) 94, 622
NheI GCTAGC 1 cut(s) 349
NlaIII CATG 5 cut(s) 197, 349, 539, 732, 744
NlaIV GGNNCC 1 cut(s) 199
NsiI ATGCAT 1 cut(s) 541
NspI RCATGY 1 cut(s) 732
PasI CCCWGGG 1 cut(s) 522
PcsI WCGNNNNNNNCGW 1 cut(s) 369
PctI GAATGC 3 cut(s) 269, 338, 467
PkrI GCNGC 3 cut(s) 70, 178, 581
Psp6I CCWGG 3 cut(s) 234, 393, 521
PspGI CCWGG 3 cut(s) 234, 393, 521
PspN4I GGNNCC 1 cut(s) 199
PstNI CAGNNNCTG 1 cut(s) 260
RsaI GTAC 3 cut(s) 199, 329, 416
RsaNI GTAC 3 cut(s) 198, 328, 415
SaqAI TTAA 2 cut(s) 203, 489
SatI GCNGC 3 cut(s) 69, 177, 580
Sau3AI GATC 2 cut(s) 94, 622
ScrFI CCNGG 3 cut(s) 236, 395, 523
SduI GDGCHC 1 cut(s) 217
SfaNI GCATC 2 cut(s) 194, 299
SmlI CTYRAG 1 cut(s) 488
SmoI CTYRAG 1 cut(s) 488
Sse9I AATT 1 cut(s) 114
SsiI CCGC 1 cut(s) 69
SspMI CTAG 1 cut(s) 350
StyD4I CCNGG 3 cut(s) 234, 393, 521
StyI CCWWGG 1 cut(s) 193
TaaI ACNGT 4 cut(s) 12, 262, 305, 710
TaqI TCGA 1 cut(s) 638
TasI AATT 1 cut(s) 114
TatI WGTACW 1 cut(s) 414
TauI GCSGC 1 cut(s) 71
Tru1I TTAA 2 cut(s) 203, 489
Tru9I TTAA 2 cut(s) 203, 489
TscAI CASTG 1 cut(s) 265
TseI GCWGC 2 cut(s) 176, 579
TspDTI ATGAA 3 cut(s) 174, 474, 524
TspGWI ACGGA 1 cut(s) 71
TspRI CASTG 1 cut(s) 265
Vha464I CTTAAG 1 cut(s) 488
XceI RCATGY 1 cut(s) 732
XspI CTAG 1 cut(s) 350
Zsp2I ATGCAT 1 cut(s) 541
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.