Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003556.1

Orthogroup ID

OG0016869

Physical Location & Seq

Genomic Coordinates Forward (+)

50557 .. 51492

Gene Structure 936 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003556.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

atggctgaaccgtttgttcaacacataaactcatcgtcatcaacaccagtagcaaactctgcggcggccgcctcattagtccggtcaatggcagatcaacagattgtgttacaaattggacaactatcaagttcaacaccaccactaccaccacctcatgatgaacaaactaaatcagtagcaccagcatcacaccatggtaccttaaacctcagggtaactgagccgattttgctacacataaactcgttaacaccacttctcaataaccaaccaattagtactcaatcaacaccaacaccaacatcaccaccaccaccaccaccaccaccaccaaaaaaccaagtaacctctaatccaccgactgatattgcacaatctttgaaaggcacaaagcaccaaaaggcacttagcaagatgggaagcctggcaaacctgttacccacaggcactgttcttgcattccaagccatcacgccttccctttcctacaacggtagatgccacatcttcaacaagtaccttgttgcattcgtcatgctggcttgctctctcgtttgcttcgtctcttccttcaccgacagcctagaatatgagcagaaagtgtactatggcattgcaacattcaacgggctttcagttttcaactatgaacgtcgtgaggttgaagaaaaagctcttgaggataagctgaagtcgctgaagattacacccagggactatcttcatgcgtttctctcggtttttgtgttcctgatatttgcttgtagcagcttagaggtgcagacctgctactttccggctggaataagagatcagttggagtattcgatggtgatatatttgcctttggtcgttggattgctgtcaagtttcttgttcacccatttccctactaaccgtagagggattggctacacatgcaccagaacatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0008150 GO:0009705 GO:0009987 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071840 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF679

Protein Analysis

311

Amino Acids

34.08

Weight (kDa)

8.48

Isoelectric Point (pI)

49.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016869)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g05190
malus_domestica	MD04G1047900.v1.1
prunus_persica	Prupe.1G204900_v2.0.a1 Prupe.1G205000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0453841
rosa_laevigata	RLG00000025498
rosa_multiflora	Rmu_sc0003556.1_g000012
rosa_roxburghii	Rroxscaffold_6G00430670
rosa_rugosa	Rorug02G0651600
rosa_samantha	Rh3AG054000 Rh3BG055400 Rh3CG054700 Rh3DG056000
rosa_wichuraiana	Rw3G004150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	797
Acc65I	GGTACC	1 cut(s)	200
AccB1I	GGYRCC	1 cut(s)	200
AciI	CCGC	3 cut(s)	62, 65, 69
AcoI	YGGCCR	1 cut(s)	66
AcuI	CTGAAG	2 cut(s)	713, 722
AfaI	GTAC	4 cut(s)	202, 283, 521, 608
AfiI	CCNNNNNNNGG	1 cut(s)	88
AgsI	TTSAA	7 cut(s)	20, 135, 385, 514, 628, 646, 668
AjnI	CCWGG	2 cut(s)	426, 713
AluBI	AGCT	3 cut(s)	677, 691, 774
AluI	AGCT	3 cut(s)	677, 691, 774
Alw26I	GTCTC	1 cut(s)	571
AlwNI	CAGNNNCTG	1 cut(s)	452
AoxI	GGCC	1 cut(s)	66
ApeKI	GCWGC	1 cut(s)	771
Asp718I	GGTACC	1 cut(s)	200
AsuHPI	GGTGA	4 cut(s)	300, 568, 847, 874
AxyI	CCTNAGG	1 cut(s)	212
BaeI	ACNNNNGTAYC	2 cut(s)	184, 217
BanI	GGYRCC	1 cut(s)	200
BbvI	GCAGC	1 cut(s)	783
BccI	CCATC	3 cut(s)	412, 479, 826
BciT130I	CCWGG	2 cut(s)	428, 715
BcoDI	GTCTC	1 cut(s)	571
BfaI	CTAG	1 cut(s)	587
BfuAI	ACCTGC	1 cut(s)	797
BisI	GCNGC	4 cut(s)	63, 66, 69, 772
BlsI	GCNGC	4 cut(s)	64, 67, 70, 773
BmcAI	AGTACT	1 cut(s)	283
Bme1390I	CCNGG	2 cut(s)	428, 715
BmiI	GGNNCC	1 cut(s)	202
BmrFI	CCNGG	2 cut(s)	428, 715
BmsI	GCATC	2 cut(s)	197, 491
BpuEI	CTTGAG	1 cut(s)	701
BsaJI	CCNNGG	3 cut(s)	196, 713, 714
BsaWI	WCCGGW	1 cut(s)	81
Bsc4I	CCNNNNNNNGG	1 cut(s)	88
Bse1I	ACTGG	1 cut(s)	47
Bse21I	CCTNAGG	1 cut(s)	212
Bse3DI	GCAATG	1 cut(s)	615
BseBI	CCWGG	2 cut(s)	428, 715
BseDI	CCNNGG	3 cut(s)	196, 713, 714
BseLI	CCNNNNNNNGG	1 cut(s)	88
BseMI	GCAATG	1 cut(s)	615
BseMII	CTCAG	2 cut(s)	213, 226
BseNI	ACTGG	1 cut(s)	47
BseX3I	CGGCCG	1 cut(s)	66
BseXI	GCAGC	1 cut(s)	783
BsgI	GTGCAG	1 cut(s)	803
Bsh1285I	CGRYCG	1 cut(s)	69
BshFI	GGCC	1 cut(s)	68
BshNI	GGYRCC	1 cut(s)	200
BsiEI	CGRYCG	1 cut(s)	69
BsiSI	CCGG	2 cut(s)	82, 800
BslFI	GGGAC	1 cut(s)	731
BslI	CCNNNNNNNGG	1 cut(s)	88
BsmAI	GTCTC	1 cut(s)	571
BsmBI	CGTCTC	1 cut(s)	571
BsmFI	GGGAC	1 cut(s)	731
BsmI	GAATGC	2 cut(s)	461, 530
BsnI	GGCC	1 cut(s)	68
Bsp143I	GATC	2 cut(s)	94, 814
Bsp19I	CCATGG	1 cut(s)	196
BspACI	CCGC	3 cut(s)	62, 65, 69
BspANI	GGCC	1 cut(s)	68
BspCNI	CTCAG	2 cut(s)	214, 225
BspHI	TCATGA	1 cut(s)	157
BspLI	GGNNCC	1 cut(s)	202
BspMI	ACCTGC	1 cut(s)	797
BspT107I	GGYRCC	1 cut(s)	200
BsrDI	GCAATG	1 cut(s)	615
BsrI	ACTGG	1 cut(s)	47
BssECI	CCNNGG	3 cut(s)	196, 713, 714
BssMI	GATC	2 cut(s)	94, 814
BssT1I	CCWWGG	1 cut(s)	196
Bst2UI	CCWGG	2 cut(s)	428, 715
Bst4CI	ACNGT	4 cut(s)	12, 454, 497, 902
Bst6I	CTCTTC	1 cut(s)	574
BstAPI	GCANNNNNTGC	1 cut(s)	59
BstC8I	GCNNGC	2 cut(s)	543, 547
BstDEI	CTNAG	4 cut(s)	212, 222, 410, 775
BstDSI	CCRYGG	1 cut(s)	196
BstKTI	GATC	2 cut(s)	97, 817
BstMAI	GTCTC	1 cut(s)	571
BstMBI	GATC	2 cut(s)	94, 814
BstMCI	CGRYCG	1 cut(s)	69
BstMWI	GCNNNNNNNGC	6 cut(s)	59, 68, 232, 467, 697, 921
BstNI	CCWGG	2 cut(s)	428, 715
BstNSI	RCATGY	1 cut(s)	924
BstSCI	CCNGG	2 cut(s)	426, 713
BstV1I	GCAGC	1 cut(s)	783
BstZI	CGGCCG	1 cut(s)	66
Bsu36I	CCTNAGG	1 cut(s)	212
BsuRI	GGCC	1 cut(s)	68
BtgI	CCRYGG	1 cut(s)	196
BtsIMutI	CAGTG	1 cut(s)	450
BveI	ACCTGC	1 cut(s)	797
Cac8I	GCNNGC	2 cut(s)	543, 547
CaiI	CAGNNNCTG	1 cut(s)	452
CciI	TCATGA	1 cut(s)	157
CciNI	GCGGCCGC	1 cut(s)	66
Csp6I	GTAC	4 cut(s)	201, 282, 520, 607
CviAII	CATG	6 cut(s)	158, 197, 538, 728, 921, 933
CviQI	GTAC	4 cut(s)	201, 282, 520, 607
DdeI	CTNAG	4 cut(s)	212, 222, 410, 775
DpnI	GATC	2 cut(s)	96, 816
DpnII	GATC	2 cut(s)	94, 814
EaeI	YGGCCR	1 cut(s)	66
EagI	CGGCCG	1 cut(s)	66
Eam1104I	CTCTTC	1 cut(s)	574
EarI	CTCTTC	1 cut(s)	574
EclXI	CGGCCG	1 cut(s)	66
Eco130I	CCWWGG	1 cut(s)	196
Eco52I	CGGCCG	1 cut(s)	66
Eco57I	CTGAAG	2 cut(s)	713, 722
Eco81I	CCTNAGG	1 cut(s)	212
EcoRII	CCWGG	2 cut(s)	426, 713
EcoT14I	CCWWGG	1 cut(s)	196
ErhI	CCWWGG	1 cut(s)	196
Esp3I	CGTCTC	1 cut(s)	571
FaeI	CATG	6 cut(s)	161, 200, 541, 731, 924, 936
FaqI	GGGAC	1 cut(s)	731
FatI	CATG	6 cut(s)	157, 196, 537, 727, 920, 932
Fnu4HI	GCNGC	4 cut(s)	63, 66, 69, 772
Fsp4HI	GCNGC	4 cut(s)	63, 66, 69, 772
FspBI	CTAG	1 cut(s)	587
GluI	GCNGC	4 cut(s)	63, 66, 69, 772
HaeIII	GGCC	1 cut(s)	68
HapII	CCGG	2 cut(s)	82, 800
Hin1II	CATG	6 cut(s)	161, 200, 541, 731, 924, 936
HincII	GTYRAC	1 cut(s)	252
HindII	GTYRAC	1 cut(s)	252
HpaI	GTTAAC	1 cut(s)	252
HpaII	CCGG	2 cut(s)	82, 800
HphI	GGTGA	4 cut(s)	300, 568, 847, 874
Hpy166II	GTNNAC	3 cut(s)	252, 607, 882
Hpy188III	TCNNGA	4 cut(s)	158, 659, 680, 754
Hpy8I	GTNNAC	3 cut(s)	252, 607, 882
Hpy99I	CGWCG	1 cut(s)	660
HpyAV	CCTTC	2 cut(s)	489, 583
HpyCH4III	ACNGT	4 cut(s)	12, 454, 497, 902
HpyCH4IV	ACGT	1 cut(s)	655
HpyCH4V	TGCA	6 cut(s)	374, 461, 530, 620, 784, 924
HpyF10VI	GCNNNNNNNGC	6 cut(s)	59, 68, 232, 467, 697, 921
HpyF3I	CTNAG	4 cut(s)	212, 222, 410, 775
HpySE526I	ACGT	1 cut(s)	655
Hsp92II	CATG	6 cut(s)	161, 200, 541, 731, 924, 936
KpnI	GGTACC	1 cut(s)	204
KspAI	GTTAAC	1 cut(s)	252
Kzo9I	GATC	2 cut(s)	94, 814
Lsp1109I	GCAGC	1 cut(s)	783
LweI	GCATC	2 cut(s)	197, 491
MaeI	CTAG	1 cut(s)	587
MaeII	ACGT	1 cut(s)	655
MaeIII	GTNAC	4 cut(s)	108, 217, 346, 438
MalI	GATC	2 cut(s)	96, 816
MboI	GATC	2 cut(s)	94, 814
MboII	GAAGA	5 cut(s)	502, 561, 680, 715, 716
MluCI	AATT	2 cut(s)	114, 276
MmeI	TCCRAC	2 cut(s)	801, 838
MnlI	CCTC	8 cut(s)	82, 165, 221, 361, 655, 676, 772, 899
MseI	TTAA	2 cut(s)	206, 251
MspI	CCGG	2 cut(s)	82, 800
MspR9I	CCNGG	2 cut(s)	428, 715
Mva1269I	GAATGC	2 cut(s)	461, 530
MvaI	CCWGG	2 cut(s)	428, 715
MwoI	GCNNNNNNNGC	6 cut(s)	59, 68, 232, 467, 697, 921
NcoI	CCATGG	1 cut(s)	196
NdeII	GATC	2 cut(s)	94, 814
NlaIII	CATG	6 cut(s)	161, 200, 541, 731, 924, 936
NlaIV	GGNNCC	1 cut(s)	202
NotI	GCGGCCGC	1 cut(s)	66
NspI	RCATGY	1 cut(s)	924
PagI	TCATGA	1 cut(s)	157
PasI	CCCWGGG	1 cut(s)	714
PcsI	WCGNNNNNNNCGW	1 cut(s)	561
PctI	GAATGC	2 cut(s)	461, 530
PkrI	GCNGC	4 cut(s)	64, 67, 70, 773
Psp6I	CCWGG	2 cut(s)	426, 713
PspGI	CCWGG	2 cut(s)	426, 713
PspN4I	GGNNCC	1 cut(s)	202
PstNI	CAGNNNCTG	1 cut(s)	452
RsaI	GTAC	4 cut(s)	202, 283, 521, 608
RsaNI	GTAC	4 cut(s)	201, 282, 520, 607
SaqAI	TTAA	2 cut(s)	206, 251
SatI	GCNGC	4 cut(s)	63, 66, 69, 772
Sau3AI	GATC	2 cut(s)	94, 814
ScaI	AGTACT	1 cut(s)	283
ScrFI	CCNGG	2 cut(s)	428, 715
SfaNI	GCATC	2 cut(s)	197, 491
SmlI	CTYRAG	1 cut(s)	680
SmoI	CTYRAG	1 cut(s)	680
Sse9I	AATT	2 cut(s)	114, 276
SsiI	CCGC	3 cut(s)	62, 65, 69
SspMI	CTAG	1 cut(s)	587
StyD4I	CCNGG	2 cut(s)	426, 713
StyI	CCWWGG	1 cut(s)	196
TaaI	ACNGT	4 cut(s)	12, 454, 497, 902
TaiI	ACGT	1 cut(s)	658
TaqI	TCGA	1 cut(s)	830
TasI	AATT	2 cut(s)	114, 276
TatI	WGTACW	2 cut(s)	281, 606
TauI	GCSGC	3 cut(s)	65, 68, 71
Tru1I	TTAA	2 cut(s)	206, 251
Tru9I	TTAA	2 cut(s)	206, 251
TscAI	CASTG	1 cut(s)	457
TseI	GCWGC	1 cut(s)	771
TspDTI	ATGAA	3 cut(s)	177, 666, 716
TspRI	CASTG	1 cut(s)	457
XceI	RCATGY	1 cut(s)	924
XspI	CTAG	1 cut(s)	587
ZrmI	AGTACT	1 cut(s)	283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.