Rw3G004150

Protein of unknown function (DUF679)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0016869
Physical Location & Seq
Forward (+)
3598652 .. 3599579
928 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G004150.1

Sequence Viewer

Length: 921 bp
ATGGCTGAACCGTTTGTTCAACACATAAACTCATCGTCATCAACACCAGTAGCAAACTCTGCGGCGGCCGCCTCATTAGTCCGGTCAATGGCAGATCAACAGATTGTGTTACAAATTGGACAACTATCAAGTTCAACACCACCACTACCACCACCTCATGATGAACAAACTAAATCAGTAGCACCAGCATCACACCATGGTACCTTAAACCTCAGGGTAACTGAGCCGATTTTGCTACACATAAACTCGTTAACACCACTTCTCAATAACCAACCAATTAGTACTCAATCAACACCAACACCAACACCACCACCACCACCAAAAAACCAAGTAACCTCTAATCCACCGACTGATATTGCTCAATCTTTGAAAGGCACAAAGCACCAAAAGGCACTTAGCAAGATGGGAAGCCTGGCAAACCTGTTACCCACAGGCACTGTTCTTGCATTCCAAGCCATCACGCCTTCCCTTTCCTACAACGGTAGATGCCACATCTTCAACAAGTACCTTGTTGCATTCGTCATGCTGGCTTGCTCTCTCGTTTGCTTCGTCTCTTCCTTCACCGACAGCCTAGAATATGAGCAGAAAGTGTACTATGGCATTGCAACATTCAACGGGCTTTCAGTTTTCAACTATGAACGTCGTGAGGTTGAAGAAAAAGCTCTTGAGGATAAGCTGAAGTCGCTGAAGATTACACCCAGGGACTATCTTCATGCGTTTCTCTCGGTTTTTGTGTTCCTGATATTTGCTTGTAGCAGCTTAGAGGTGCAGACCTGCTACTTTCCGGCTGGAATAAGAGATCAGTTGGAGTATTCGATGGTGATATATTTGCCTTTGGTCGTTGGATTGCTGTCAAGTTTCTTGTTCACCCATTTCCCTACTAACCGTAGAGGGATTGGCTACACATGCACCAGAACATGA

Protein Analysis

306

Amino Acids

33.61

Weight (kDa)

8.48

Isoelectric Point (pI)

45.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF679 PF05078 134 - 301 2.8e-52 Protein of unknown function (DUF679)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016869)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g05190
malus_domestica MD04G1047900.v1.1
prunus_persica Prupe.1G204900_v2.0.a1 Prupe.1G205000_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0453841
rosa_laevigata RLG00000025498
rosa_multiflora Rmu_sc0003556.1_g000012
rosa_roxburghii Rroxscaffold_6G00430670
rosa_rugosa Rorug02G0651600
rosa_samantha Rh3AG054000 Rh3BG055400 Rh3CG054700 Rh3DG056000
rosa_wichuraiana Rw3G004150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 782
Acc65I GGTACC 1 cut(s) 200
AccB1I GGYRCC 1 cut(s) 200
AciI CCGC 3 cut(s) 62, 65, 69
AcoI YGGCCR 1 cut(s) 66
AcuI CTGAAG 2 cut(s) 698, 707
AfaI GTAC 4 cut(s) 202, 283, 506, 593
AfiI CCNNNNNNNGG 1 cut(s) 88
AgsI TTSAA 7 cut(s) 20, 135, 370, 499, 613, 631, 653
AjnI CCWGG 2 cut(s) 411, 698
AluBI AGCT 3 cut(s) 662, 676, 759
AluI AGCT 3 cut(s) 662, 676, 759
Alw26I GTCTC 1 cut(s) 556
AlwNI CAGNNNCTG 1 cut(s) 437
AoxI GGCC 1 cut(s) 66
ApeKI GCWGC 1 cut(s) 756
Asp718I GGTACC 1 cut(s) 200
AsuHPI GGTGA 3 cut(s) 553, 832, 859
AxyI CCTNAGG 1 cut(s) 212
BaeI ACNNNNGTAYC 2 cut(s) 184, 217
BanI GGYRCC 1 cut(s) 200
BbvI GCAGC 1 cut(s) 768
BccI CCATC 3 cut(s) 397, 464, 811
BciT130I CCWGG 2 cut(s) 413, 700
BcoDI GTCTC 1 cut(s) 556
BfaI CTAG 1 cut(s) 572
BfuAI ACCTGC 1 cut(s) 782
BisI GCNGC 4 cut(s) 63, 66, 69, 757
BlsI GCNGC 4 cut(s) 64, 67, 70, 758
BmcAI AGTACT 1 cut(s) 283
Bme1390I CCNGG 2 cut(s) 413, 700
BmiI GGNNCC 1 cut(s) 202
BmrFI CCNGG 2 cut(s) 413, 700
BmsI GCATC 2 cut(s) 197, 476
BpuEI CTTGAG 1 cut(s) 686
BsaJI CCNNGG 3 cut(s) 196, 698, 699
BsaWI WCCGGW 1 cut(s) 81
Bsc4I CCNNNNNNNGG 1 cut(s) 88
Bse1I ACTGG 1 cut(s) 47
Bse21I CCTNAGG 1 cut(s) 212
Bse3DI GCAATG 1 cut(s) 600
BseBI CCWGG 2 cut(s) 413, 700
BseDI CCNNGG 3 cut(s) 196, 698, 699
BseLI CCNNNNNNNGG 1 cut(s) 88
BseMI GCAATG 1 cut(s) 600
BseMII CTCAG 2 cut(s) 213, 226
BseNI ACTGG 1 cut(s) 47
BseX3I CGGCCG 1 cut(s) 66
BseXI GCAGC 1 cut(s) 768
BsgI GTGCAG 1 cut(s) 788
Bsh1285I CGRYCG 1 cut(s) 69
BshFI GGCC 1 cut(s) 68
BshNI GGYRCC 1 cut(s) 200
BsiEI CGRYCG 1 cut(s) 69
BsiSI CCGG 2 cut(s) 82, 785
BslFI GGGAC 1 cut(s) 716
BslI CCNNNNNNNGG 1 cut(s) 88
BsmAI GTCTC 1 cut(s) 556
BsmBI CGTCTC 1 cut(s) 556
BsmFI GGGAC 1 cut(s) 716
BsmI GAATGC 2 cut(s) 446, 515
BsnI GGCC 1 cut(s) 68
Bsp143I GATC 2 cut(s) 94, 799
Bsp19I CCATGG 1 cut(s) 196
BspACI CCGC 3 cut(s) 62, 65, 69
BspANI GGCC 1 cut(s) 68
BspCNI CTCAG 2 cut(s) 214, 225
BspHI TCATGA 1 cut(s) 157
BspLI GGNNCC 1 cut(s) 202
BspMI ACCTGC 1 cut(s) 782
BspT107I GGYRCC 1 cut(s) 200
BsrDI GCAATG 1 cut(s) 600
BsrI ACTGG 1 cut(s) 47
BssECI CCNNGG 3 cut(s) 196, 698, 699
BssMI GATC 2 cut(s) 94, 799
BssT1I CCWWGG 1 cut(s) 196
Bst2UI CCWGG 2 cut(s) 413, 700
Bst4CI ACNGT 4 cut(s) 12, 439, 482, 887
Bst6I CTCTTC 1 cut(s) 559
BstAPI GCANNNNNTGC 1 cut(s) 59
BstC8I GCNNGC 2 cut(s) 528, 532
BstDEI CTNAG 4 cut(s) 212, 222, 395, 760
BstDSI CCRYGG 1 cut(s) 196
BstKTI GATC 2 cut(s) 97, 802
BstMAI GTCTC 1 cut(s) 556
BstMBI GATC 2 cut(s) 94, 799
BstMCI CGRYCG 1 cut(s) 69
BstMWI GCNNNNNNNGC 6 cut(s) 59, 68, 232, 452, 682, 906
BstNI CCWGG 2 cut(s) 413, 700
BstNSI RCATGY 1 cut(s) 909
BstSCI CCNGG 2 cut(s) 411, 698
BstV1I GCAGC 1 cut(s) 768
BstZI CGGCCG 1 cut(s) 66
Bsu36I CCTNAGG 1 cut(s) 212
BsuRI GGCC 1 cut(s) 68
BtgI CCRYGG 1 cut(s) 196
BtsIMutI CAGTG 1 cut(s) 435
BveI ACCTGC 1 cut(s) 782
Cac8I GCNNGC 2 cut(s) 528, 532
CaiI CAGNNNCTG 1 cut(s) 437
CciI TCATGA 1 cut(s) 157
CciNI GCGGCCGC 1 cut(s) 66
Csp6I GTAC 4 cut(s) 201, 282, 505, 592
CviAII CATG 6 cut(s) 158, 197, 523, 713, 906, 918
CviQI GTAC 4 cut(s) 201, 282, 505, 592
DdeI CTNAG 4 cut(s) 212, 222, 395, 760
DpnI GATC 2 cut(s) 96, 801
DpnII GATC 2 cut(s) 94, 799
EaeI YGGCCR 1 cut(s) 66
EagI CGGCCG 1 cut(s) 66
Eam1104I CTCTTC 1 cut(s) 559
EarI CTCTTC 1 cut(s) 559
EclXI CGGCCG 1 cut(s) 66
Eco130I CCWWGG 1 cut(s) 196
Eco52I CGGCCG 1 cut(s) 66
Eco57I CTGAAG 2 cut(s) 698, 707
Eco81I CCTNAGG 1 cut(s) 212
EcoRII CCWGG 2 cut(s) 411, 698
EcoT14I CCWWGG 1 cut(s) 196
ErhI CCWWGG 1 cut(s) 196
Esp3I CGTCTC 1 cut(s) 556
FaeI CATG 6 cut(s) 161, 200, 526, 716, 909, 921
FaqI GGGAC 1 cut(s) 716
FatI CATG 6 cut(s) 157, 196, 522, 712, 905, 917
Fnu4HI GCNGC 4 cut(s) 63, 66, 69, 757
Fsp4HI GCNGC 4 cut(s) 63, 66, 69, 757
FspBI CTAG 1 cut(s) 572
GluI GCNGC 4 cut(s) 63, 66, 69, 757
HaeIII GGCC 1 cut(s) 68
HapII CCGG 2 cut(s) 82, 785
Hin1II CATG 6 cut(s) 161, 200, 526, 716, 909, 921
HincII GTYRAC 1 cut(s) 252
HindII GTYRAC 1 cut(s) 252
HpaI GTTAAC 1 cut(s) 252
HpaII CCGG 2 cut(s) 82, 785
HphI GGTGA 3 cut(s) 553, 832, 859
Hpy166II GTNNAC 3 cut(s) 252, 592, 867
Hpy188III TCNNGA 4 cut(s) 158, 644, 665, 739
Hpy8I GTNNAC 3 cut(s) 252, 592, 867
Hpy99I CGWCG 1 cut(s) 645
HpyAV CCTTC 2 cut(s) 474, 568
HpyCH4III ACNGT 4 cut(s) 12, 439, 482, 887
HpyCH4IV ACGT 1 cut(s) 640
HpyCH4V TGCA 5 cut(s) 446, 515, 605, 769, 909
HpyF10VI GCNNNNNNNGC 6 cut(s) 59, 68, 232, 452, 682, 906
HpyF3I CTNAG 4 cut(s) 212, 222, 395, 760
HpySE526I ACGT 1 cut(s) 640
Hsp92II CATG 6 cut(s) 161, 200, 526, 716, 909, 921
KpnI GGTACC 1 cut(s) 204
KspAI GTTAAC 1 cut(s) 252
Kzo9I GATC 2 cut(s) 94, 799
Lsp1109I GCAGC 1 cut(s) 768
LweI GCATC 2 cut(s) 197, 476
MaeI CTAG 1 cut(s) 572
MaeII ACGT 1 cut(s) 640
MaeIII GTNAC 4 cut(s) 108, 217, 331, 423
MalI GATC 2 cut(s) 96, 801
MboI GATC 2 cut(s) 94, 799
MboII GAAGA 5 cut(s) 487, 546, 665, 700, 701
MluCI AATT 2 cut(s) 114, 276
MmeI TCCRAC 2 cut(s) 786, 823
MnlI CCTC 8 cut(s) 82, 165, 221, 346, 640, 661, 757, 884
MseI TTAA 2 cut(s) 206, 251
MspI CCGG 2 cut(s) 82, 785
MspR9I CCNGG 2 cut(s) 413, 700
Mva1269I GAATGC 2 cut(s) 446, 515
MvaI CCWGG 2 cut(s) 413, 700
MwoI GCNNNNNNNGC 6 cut(s) 59, 68, 232, 452, 682, 906
NcoI CCATGG 1 cut(s) 196
NdeII GATC 2 cut(s) 94, 799
NlaIII CATG 6 cut(s) 161, 200, 526, 716, 909, 921
NlaIV GGNNCC 1 cut(s) 202
NotI GCGGCCGC 1 cut(s) 66
NspI RCATGY 1 cut(s) 909
PagI TCATGA 1 cut(s) 157
PasI CCCWGGG 1 cut(s) 699
PcsI WCGNNNNNNNCGW 1 cut(s) 546
PctI GAATGC 2 cut(s) 446, 515
PkrI GCNGC 4 cut(s) 64, 67, 70, 758
Psp6I CCWGG 2 cut(s) 411, 698
PspGI CCWGG 2 cut(s) 411, 698
PspN4I GGNNCC 1 cut(s) 202
PstNI CAGNNNCTG 1 cut(s) 437
RsaI GTAC 4 cut(s) 202, 283, 506, 593
RsaNI GTAC 4 cut(s) 201, 282, 505, 592
SaqAI TTAA 2 cut(s) 206, 251
SatI GCNGC 4 cut(s) 63, 66, 69, 757
Sau3AI GATC 2 cut(s) 94, 799
ScaI AGTACT 1 cut(s) 283
ScrFI CCNGG 2 cut(s) 413, 700
SfaNI GCATC 2 cut(s) 197, 476
SmlI CTYRAG 1 cut(s) 665
SmoI CTYRAG 1 cut(s) 665
Sse9I AATT 2 cut(s) 114, 276
SsiI CCGC 3 cut(s) 62, 65, 69
SspMI CTAG 1 cut(s) 572
StyD4I CCNGG 2 cut(s) 411, 698
StyI CCWWGG 1 cut(s) 196
TaaI ACNGT 4 cut(s) 12, 439, 482, 887
TaiI ACGT 1 cut(s) 643
TaqI TCGA 1 cut(s) 815
TasI AATT 2 cut(s) 114, 276
TatI WGTACW 2 cut(s) 281, 591
TauI GCSGC 3 cut(s) 65, 68, 71
Tru1I TTAA 2 cut(s) 206, 251
Tru9I TTAA 2 cut(s) 206, 251
TscAI CASTG 1 cut(s) 442
TseI GCWGC 1 cut(s) 756
TspDTI ATGAA 3 cut(s) 177, 651, 701
TspRI CASTG 1 cut(s) 442
XceI RCATGY 1 cut(s) 909
XspI CTAG 1 cut(s) 572
ZrmI AGTACT 1 cut(s) 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.