MD04G1070700.v1.1

Protein of unknown function (DUF1191)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0013131
Physical Location & Seq
Reverse (-)
9659175 .. 9660149
975 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1070700.v1.1.491

Sequence Viewer

Length: 975 bp
ATGATTTATTGTTACTATATTCGTTCTTCGAAATCAAGCTCATTTTCTCACATGGGCTCTCCCTTCTATCTCACATTGGTTGTTCTTTCATTCATATGTGTAGCGTTCACAAAATCTGAAGCTCAGAAGATCCAATCAGCCCGTCTTCTCGACCTTCTCATTCGAGACGTCACCTTCAAGGCGTACGACACACGCATCAGGACAGGAACACTACACACTGTAAATTTACCAGCAAACTTCTCAGGCATCATAGTTGATACTGCAAGATACAGATGTGGCAGTCTGCGAAGGTACGGCGCGCAGGTAAAAGAATTTCATCTAGGCACTGGTGTATCTGTGCATCCATGTGCTGAGAGGGTCATGGTAGTTAGACAAAATTTGGGATATAATTGGTCCTCAATATATTATGCCAACTATGACCTATCTGGATATCAGCTTGTTTCTCCAATTTTAGGCCTCTTAGCGTATAACGCCGGTACGGATGTGAACTTCAGCAACCCTTTTGAGCTTGGTATTGAAGCTGGAGAAAAACCCATCAGCATTGATTTTAAAAACATCACAAGGGTGAACAATGAATTGGGTACAAGGCCATTATGTGCAAGTTTTGAAGGTGATGGCAAAGTGACATTGGCAAGGGAAACTAAACCTTACATTTGTGTTGCAAAAAGGCATGGACATTTCGGGTTGGTCATCGAGAAGCCTATTCCGGTGCAATTGAGGAAGAGAGTGAGCCAGTGGAAAATAGCGGTTGGAAGCTCGGTTGGATCTGCATTGGGTGCTTTTCTTTTGGGACTGCTTTTAGTGGCAATGCTTGTGAAGGTGAAGAAGCAGTCGAGGATGGTGGAGATGGAGAGAAGGGCTTATGAAGAGGAAGCTTTACAGGTATCAATGGTTGGACATGTGAGGGCTCCTACCGCATCGGGTACTCGAACAACACCAGCAATTGAGCATGAGTATATACCTCCTCCTCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1191

Protein Analysis

325

Amino Acids

36.05

Weight (kDa)

9.48

Isoelectric Point (pI)

34.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1191 PF06697 45 - 232 3.6e-64 Protein of unknown function (DUF1191)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013131)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G11950 AT4G22900
fragaria_vesca FvH4_5g01210
malus_domestica MD00G1122700.v1.1 MD04G1070700.v1.1
prunus_persica Prupe.5G087200_v2.0.a1
pyrus_communis pycom04g06390 pycom06g06860
rosa_chinensis RchiOBHm_Chr7g0199881
rosa_laevigata RLG00000003763
rosa_multiflora Rmu_sc0002748.1_g000013
rosa_roxburghii Rroxscaffold_3G00256410
rosa_rugosa Rorug07G0056800
rosa_samantha Rh7AG182100 Rh7BG185000 Rh7CG191600 Rh7DG184900
rosa_wichuraiana Rw7G015970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 171
Acc36I ACCTGC 1 cut(s) 292
AccII CGCG 1 cut(s) 299
AciI CCGC 2 cut(s) 746, 915
AclWI GGATC 2 cut(s) 124, 772
AcsI RAATTY 3 cut(s) 223, 311, 376
AcuI CTGAAG 2 cut(s) 138, 475
AcyI GRCGYC 1 cut(s) 168
AfaI GTAC 5 cut(s) 185, 293, 478, 583, 925
AfiI CCNNNNNNNGG 1 cut(s) 452
AflIII ACRYGT 1 cut(s) 898
AgsI TTSAA 3 cut(s) 178, 518, 608
AjuI GAANNNNNNNTTGG 2 cut(s) 560, 592
AleI CACNNNNGTG 1 cut(s) 563
AluBI AGCT 7 cut(s) 39, 122, 436, 508, 521, 756, 875
AluI AGCT 7 cut(s) 39, 122, 436, 508, 521, 756, 875
Alw26I GTCTC 1 cut(s) 159
AlwI GGATC 2 cut(s) 124, 772
AoxI GGCC 2 cut(s) 454, 587
ApoI RAATTY 3 cut(s) 223, 311, 376
AspLEI GCGC 2 cut(s) 299, 301
AspS9I GGNCC 1 cut(s) 393
AsuHPI GGTGA 4 cut(s) 163, 577, 623, 832
AsuII TTCGAA 1 cut(s) 29
AvaII GGWCC 1 cut(s) 393
BaeI ACNNNNGTAYC 6 cut(s) 259, 292, 315, 348, 468, 501
BanII GRGCYC 2 cut(s) 59, 910
BbsI GAAGAC 1 cut(s) 137
BccI CCATC 4 cut(s) 542, 608, 832, 841
BceAI ACGGC 1 cut(s) 310
BcoDI GTCTC 1 cut(s) 159
BfaI CTAG 1 cut(s) 320
BfuAI ACCTGC 1 cut(s) 292
Bme18I GGWCC 1 cut(s) 393
BmgT120I GGNCC 1 cut(s) 393
BmiI GGNNCC 1 cut(s) 909
BmsI GCATC 4 cut(s) 204, 255, 349, 926
BpiI GAAGAC 1 cut(s) 137
BpmI CTGGAG 1 cut(s) 543
Bpu14I TTCGAA 1 cut(s) 29
BsaHI GRCGYC 1 cut(s) 168
BsaWI WCCGGW 1 cut(s) 706
Bsc4I CCNNNNNNNGG 1 cut(s) 452
Bse118I RCCGGY 1 cut(s) 473
Bse1I ACTGG 2 cut(s) 331, 733
Bse3DI GCAATG 1 cut(s) 813
BseGI GGATG 3 cut(s) 340, 487, 843
BseLI CCNNNNNNNGG 1 cut(s) 452
BseMI GCAATG 1 cut(s) 813
BseMII CTCAG 3 cut(s) 137, 255, 342
BseNI ACTGG 2 cut(s) 331, 733
BsePI GCGCGC 1 cut(s) 297
BseRI GAGGAG 2 cut(s) 954, 957
Bsh1236I CGCG 1 cut(s) 299
BshFI GGCC 2 cut(s) 456, 589
BsiSI CCGG 2 cut(s) 474, 707
BsiWI CGTACG 1 cut(s) 183
BslFI GGGAC 1 cut(s) 804
BslI CCNNNNNNNGG 1 cut(s) 452
BsmAI GTCTC 1 cut(s) 159
BsmBI CGTCTC 1 cut(s) 159
BsmFI GGGAC 1 cut(s) 804
BsnI GGCC 2 cut(s) 456, 589
Bsp119I TTCGAA 1 cut(s) 29
Bsp1286I GDGCHC 2 cut(s) 59, 910
Bsp143I GATC 2 cut(s) 129, 764
BspACI CCGC 2 cut(s) 746, 915
BspANI GGCC 2 cut(s) 456, 589
BspCNI CTCAG 3 cut(s) 136, 254, 343
BspFNI CGCG 1 cut(s) 299
BspLI GGNNCC 1 cut(s) 909
BspMI ACCTGC 1 cut(s) 292
BspPI GGATC 2 cut(s) 124, 772
BspT104I TTCGAA 1 cut(s) 29
BsrDI GCAATG 1 cut(s) 813
BsrFI RCCGGY 1 cut(s) 473
BsrI ACTGG 2 cut(s) 331, 733
BssAI RCCGGY 1 cut(s) 473
BssHII GCGCGC 1 cut(s) 297
BssMI GATC 2 cut(s) 129, 764
BssNI GRCGYC 1 cut(s) 168
Bst4CI ACNGT 1 cut(s) 220
Bst6I CTCTTC 2 cut(s) 716, 861
BstACI GRCGYC 1 cut(s) 168
BstAPI GCANNNNNTGC 1 cut(s) 776
BstBI TTCGAA 1 cut(s) 29
BstC8I GCNNGC 1 cut(s) 299
BstDEI CTNAG 4 cut(s) 123, 241, 351, 460
BstF5I GGATG 3 cut(s) 340, 487, 843
BstFNI CGCG 1 cut(s) 299
BstHHI GCGC 2 cut(s) 299, 301
BstKTI GATC 2 cut(s) 132, 767
BstMAI GTCTC 1 cut(s) 159
BstMBI GATC 2 cut(s) 129, 764
BstMWI GCNNNNNNNGC 3 cut(s) 470, 776, 914
BstNSI RCATGY 1 cut(s) 902
BstUI CGCG 1 cut(s) 299
BstV2I GAAGAC 1 cut(s) 137
BstX2I RGATCY 2 cut(s) 129, 764
BstYI RGATCY 2 cut(s) 129, 764
BsuRI GGCC 2 cut(s) 456, 589
BtsCI GGATG 3 cut(s) 340, 487, 843
BtsIMutI CAGTG 4 cut(s) 216, 324, 740, 970
BveI ACCTGC 1 cut(s) 292
Cac8I GCNNGC 1 cut(s) 299
CfoI GCGC 2 cut(s) 299, 301
Cfr10I RCCGGY 1 cut(s) 473
Cfr13I GGNCC 1 cut(s) 393
Csp6I GTAC 5 cut(s) 184, 292, 477, 582, 924
CviAII CATG 6 cut(s) 52, 345, 361, 671, 899, 950
CviQI GTAC 5 cut(s) 184, 292, 477, 582, 924
DdeI CTNAG 4 cut(s) 123, 241, 351, 460
DpnI GATC 2 cut(s) 131, 766
DpnII GATC 2 cut(s) 129, 764
DraI TTTAAA 1 cut(s) 550
Eam1104I CTCTTC 2 cut(s) 716, 861
EarI CTCTTC 2 cut(s) 716, 861
Eco147I AGGCCT 1 cut(s) 456
Eco24I GRGCYC 2 cut(s) 59, 910
Eco32I GATATC 1 cut(s) 431
Eco47I GGWCC 1 cut(s) 393
Eco57I CTGAAG 2 cut(s) 138, 475
EcoRV GATATC 1 cut(s) 431
EcoT38I GRGCYC 2 cut(s) 59, 910
Esp3I CGTCTC 1 cut(s) 159
FaeI CATG 6 cut(s) 55, 348, 364, 674, 902, 953
FaqI GGGAC 1 cut(s) 804
FatI CATG 6 cut(s) 51, 344, 360, 670, 898, 949
FauNDI CATATG 1 cut(s) 95
FokI GGATG 3 cut(s) 327, 494, 850
FriOI GRGCYC 2 cut(s) 59, 910
FspBI CTAG 1 cut(s) 320
GlaI GCGC 2 cut(s) 298, 300
GsuI CTGGAG 1 cut(s) 543
HaeIII GGCC 2 cut(s) 456, 589
HapII CCGG 2 cut(s) 474, 707
HhaI GCGC 2 cut(s) 299, 301
Hin1I GRCGYC 1 cut(s) 168
Hin1II CATG 6 cut(s) 55, 348, 364, 674, 902, 953
Hin6I GCGC 2 cut(s) 297, 299
HinP1I GCGC 2 cut(s) 297, 299
HindIII AAGCTT 1 cut(s) 873
HpaII CCGG 2 cut(s) 474, 707
HphI GGTGA 4 cut(s) 163, 577, 623, 832
Hpy166II GTNNAC 3 cut(s) 108, 487, 568
Hpy188I TCNGA 2 cut(s) 118, 126
Hpy188III TCNNGA 5 cut(s) 149, 164, 199, 426, 694
Hpy8I GTNNAC 3 cut(s) 108, 487, 568
HpyAV CCTTC 7 cut(s) 73, 164, 184, 282, 602, 811, 849
HpyCH4III ACNGT 1 cut(s) 220
HpyCH4IV ACGT 1 cut(s) 168
HpyCH4V TGCA 6 cut(s) 263, 340, 599, 662, 712, 770
HpyF10VI GCNNNNNNNGC 3 cut(s) 470, 776, 914
HpyF3I CTNAG 4 cut(s) 123, 241, 351, 460
HpySE526I ACGT 1 cut(s) 168
Hsp92I GRCGYC 1 cut(s) 168
Hsp92II CATG 6 cut(s) 55, 348, 364, 674, 902, 953
HspAI GCGC 2 cut(s) 297, 299
Kzo9I GATC 2 cut(s) 129, 764
LmnI GCTCC 1 cut(s) 913
LweI GCATC 4 cut(s) 204, 255, 349, 926
MaeI CTAG 1 cut(s) 320
MaeII ACGT 1 cut(s) 168
MaeIII GTNAC 3 cut(s) 11, 169, 622
MalI GATC 2 cut(s) 131, 766
MboI GATC 2 cut(s) 129, 764
MboII GAAGA 6 cut(s) 18, 137, 139, 733, 835, 878
MfeI CAATTG 2 cut(s) 713, 942
MflI RGATCY 2 cut(s) 129, 764
MhlI GDGCHC 2 cut(s) 59, 910
MluCI AATT 8 cut(s) 223, 311, 376, 388, 447, 575, 713, 942
MmeI TCCRAC 3 cut(s) 730, 742, 874
MnlI CCTC 9 cut(s) 348, 406, 467, 711, 828, 862, 897, 972, 975
MseI TTAA 1 cut(s) 549
MslI CAYNNNNRTG 3 cut(s) 94, 345, 563
MspI CCGG 2 cut(s) 474, 707
MunI CAATTG 2 cut(s) 713, 942
MvnI CGCG 1 cut(s) 299
MwoI GCNNNNNNNGC 3 cut(s) 470, 776, 914
NdeI CATATG 1 cut(s) 95
NdeII GATC 2 cut(s) 129, 764
NlaIII CATG 6 cut(s) 55, 348, 364, 674, 902, 953
NlaIV GGNNCC 1 cut(s) 909
NmuCI GTSAC 2 cut(s) 169, 622
NspI RCATGY 1 cut(s) 902
NspV TTCGAA 1 cut(s) 29
OliI CACNNNNGTG 1 cut(s) 563
PauI GCGCGC 1 cut(s) 297
PceI AGGCCT 1 cut(s) 456
PciI ACATGT 1 cut(s) 898
Pfl23II CGTACG 1 cut(s) 183
PscI ACATGT 1 cut(s) 898
PspLI CGTACG 1 cut(s) 183
PspN4I GGNNCC 1 cut(s) 909
PspPI GGNCC 1 cut(s) 393
PsuI RGATCY 2 cut(s) 129, 764
PteI GCGCGC 1 cut(s) 297
RsaI GTAC 5 cut(s) 185, 293, 478, 583, 925
RsaNI GTAC 5 cut(s) 184, 292, 477, 582, 924
RseI CAYNNNNRTG 3 cut(s) 94, 345, 563
SaqAI TTAA 1 cut(s) 549
Sau3AI GATC 2 cut(s) 129, 764
Sau96I GGNCC 1 cut(s) 393
SduI GDGCHC 2 cut(s) 59, 910
SfaNI GCATC 4 cut(s) 204, 255, 349, 926
SfuI TTCGAA 1 cut(s) 29
SinI GGWCC 1 cut(s) 393
SmiMI CAYNNNNRTG 3 cut(s) 94, 345, 563
Sse9I AATT 8 cut(s) 223, 311, 376, 388, 447, 575, 713, 942
SseBI AGGCCT 1 cut(s) 456
SsiI CCGC 2 cut(s) 746, 915
SspMI CTAG 1 cut(s) 320
StuI AGGCCT 1 cut(s) 456
TaaI ACNGT 1 cut(s) 220
TaiI ACGT 1 cut(s) 171
TaqI TCGA 6 cut(s) 29, 150, 163, 693, 833, 928
TasI AATT 8 cut(s) 223, 311, 376, 388, 447, 575, 713, 942
Tru1I TTAA 1 cut(s) 549
Tru9I TTAA 1 cut(s) 549
TscAI CASTG 3 cut(s) 223, 331, 740
TseFI GTSAC 2 cut(s) 169, 622
Tsp45I GTSAC 2 cut(s) 169, 622
TspDTI ATGAA 5 cut(s) 78, 82, 305, 588, 879
TspGWI ACGGA 1 cut(s) 494
TspRI CASTG 3 cut(s) 223, 331, 740
VpaK11BI GGWCC 1 cut(s) 393
XapI RAATTY 3 cut(s) 223, 311, 376
XceI RCATGY 1 cut(s) 902
XspI CTAG 1 cut(s) 320
ZraI GACGTC 1 cut(s) 169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.