RchiOBHm_Chr7g0199881

Protein of unknown function (DUF1191)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0013131
Physical Location & Seq
Reverse (-)
17871580 .. 17872709
1130 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ17887

Sequence Viewer

Length: 1023 bp
ATGCCCAATAAATCAAACAAAACCGTACTACATTTATGTTCTATATCACTCACTAGCTTCATCAGTTTTTCAGAATCAAGCTCATTTTCTCACATGGGATCTCTCTTCACTCTATCACTCATACTTCTTTCATCCCTATCATTAACATTATCAAACAGTGAAGCTCAGAAGATCAAATCAGCTCGCCTTCTCGACCTTCTCATCCGAGACTACACCTTCAAGACCTATAAAACATACTCCAGGACAGGAACACTGCACAATGTTCATTTACCAGCAAACTTCTCTGGCATCACAGTTGATACAGCGAGATTCAGATGTGGCAGTCTCCGAAGGTACGGCGCGCAGGTAAAGGAATTTCATCTAGGCATTGGTGTGTCTGTGAATCCATGTGCAGAGAGGGTAATGGTGGTTACACAAAAATTAGGATATAATTGGTCATCTATATATTATGCCAACTATGACTTATCTGGGTACCAGCTTGTGTCCCCAATTTTAGGCCTATTAGCTTATAATGCTGGTACTGATGTGAACTTTAGCAACCCTTTTGAGGTAGGAATTCAAGCTCTAGAAAATCCCATCACTATAGACTTCAAAAACATCACAAGGGTGAACAATGAATTAGGTGCTACAAGGCCTTTATGTGCTAGCTTTGAAGGTGATGGTAAAGTGACACTAGCAAAGGAGGCTTCACCTTACATTTGTGTTGCGAAAAGGCATGGTCATTTCGGATTGGTGATTGAGAAGCCCTCGCCAGTTCCACTGAGGAAGAAGGTTAGCCAGTGGAAAGTGGTGGTTGGTAGCACAGTTGGGTGTGCAATAGGTGTTTTACTTCTGGGGTTGCTTCTGGTGGCAATGCTTGTGAAGGTGAAGAAGAAATCGAGGATTGTGGAGATGGAGAGAAGAGCTTATGAAGAAGAAGCTTTACAGGTATCAATGGTTGGACATGTTAGAGCTCCTACAGCTTCAGGGACACGAACTACTCCAGCGATTGAACAGGAGTATATACCTCCTCGTCCTCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1191

Protein Analysis

340

Amino Acids

37.43

Weight (kDa)

9.59

Isoelectric Point (pI)

32.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1191 PF06697 59 - 247 1.7e-63 Protein of unknown function (DUF1191)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013131)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G11950 AT4G22900
fragaria_vesca FvH4_5g01210
malus_domestica MD00G1122700.v1.1 MD04G1070700.v1.1
prunus_persica Prupe.5G087200_v2.0.a1
pyrus_communis pycom04g06390 pycom06g06860
rosa_chinensis RchiOBHm_Chr7g0199881
rosa_laevigata RLG00000003763
rosa_multiflora Rmu_sc0002748.1_g000013
rosa_roxburghii Rroxscaffold_3G00256410
rosa_rugosa Rorug07G0056800
rosa_samantha Rh7AG182100 Rh7BG185000 Rh7CG191600 Rh7DG184900
rosa_wichuraiana Rw7G015970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 510
Acc36I ACCTGC 1 cut(s) 334
Acc65I GGTACC 1 cut(s) 471
AccB1I GGYRCC 1 cut(s) 471
AccII CGCG 1 cut(s) 341
AclWI GGATC 1 cut(s) 106
AcsI RAATTY 2 cut(s) 353, 555
AcuI CTGAAG 1 cut(s) 948
AfaI GTAC 4 cut(s) 27, 335, 473, 520
AfiI CCNNNNNNNGG 2 cut(s) 494, 547
AflIII ACRYGT 1 cut(s) 943
AgsI TTSAA 5 cut(s) 220, 560, 592, 653, 992
AjnI CCWGG 1 cut(s) 239
AleI CACNNNNGTG 1 cut(s) 605
Alw21I GWGCWC 1 cut(s) 955
Alw26I GTCTC 2 cut(s) 201, 329
AlwI GGATC 1 cut(s) 106
AoxI GGCC 2 cut(s) 496, 632
ApoI RAATTY 2 cut(s) 353, 555
Asp718I GGTACC 1 cut(s) 471
AspLEI GCGC 2 cut(s) 341, 343
AsuHPI GGTGA 5 cut(s) 619, 668, 681, 745, 877
AsuNHI GCTAGC 1 cut(s) 644
BaeI ACNNNNGTAYC 2 cut(s) 510, 543
BanI GGYRCC 1 cut(s) 471
BanII GRGCYC 1 cut(s) 955
BarI GAAGNNNNNNTAC 2 cut(s) 906, 938
Bbv12I GWGCWC 1 cut(s) 955
BccI CCATC 3 cut(s) 584, 653, 886
BceAI ACGGC 1 cut(s) 352
BciT130I CCWGG 1 cut(s) 241
BcoDI GTCTC 2 cut(s) 201, 329
BfaI CTAG 5 cut(s) 54, 362, 566, 645, 674
BfmI CTRYAG 2 cut(s) 582, 957
BfuAI ACCTGC 1 cut(s) 334
Bme1390I CCNGG 1 cut(s) 241
BmiI GGNNCC 1 cut(s) 473
BmrFI CCNGG 1 cut(s) 241
BmsI GCATC 1 cut(s) 297
BmtI GCTAGC 1 cut(s) 648
BplI GAGNNNNNCTC 2 cut(s) 731, 763
BpmI CTGGAG 2 cut(s) 223, 966
Bsc4I CCNNNNNNNGG 2 cut(s) 494, 547
Bse1I ACTGG 2 cut(s) 752, 778
Bse3DI GCAATG 1 cut(s) 858
BseBI CCWGG 1 cut(s) 241
BseGI GGATG 2 cut(s) 131, 201
BseLI CCNNNNNNNGG 2 cut(s) 494, 547
BseMI GCAATG 1 cut(s) 858
BseMII CTCAG 2 cut(s) 179, 752
BseNI ACTGG 2 cut(s) 752, 778
BsePI GCGCGC 1 cut(s) 339
BseRI GAGGAG 1 cut(s) 999
BsgI GTGCAG 2 cut(s) 239, 411
Bsh1236I CGCG 1 cut(s) 341
BshFI GGCC 2 cut(s) 498, 634
BshNI GGYRCC 1 cut(s) 471
BsiHKAI GWGCWC 1 cut(s) 955
BslFI GGGAC 2 cut(s) 469, 982
BslI CCNNNNNNNGG 2 cut(s) 494, 547
BsmAI GTCTC 2 cut(s) 201, 329
BsmFI GGGAC 2 cut(s) 469, 982
BsnI GGCC 2 cut(s) 498, 634
Bsp1286I GDGCHC 1 cut(s) 955
Bsp143I GATC 2 cut(s) 98, 171
BspANI GGCC 2 cut(s) 498, 634
BspCNI CTCAG 2 cut(s) 178, 753
BspFNI CGCG 1 cut(s) 341
BspLI GGNNCC 1 cut(s) 473
BspMI ACCTGC 1 cut(s) 334
BspOI GCTAGC 1 cut(s) 648
BspPI GGATC 1 cut(s) 106
BspQI GCTCTTC 1 cut(s) 895
BspT107I GGYRCC 1 cut(s) 471
BsrDI GCAATG 1 cut(s) 858
BsrI ACTGG 2 cut(s) 752, 778
BssHII GCGCGC 1 cut(s) 339
BssMI GATC 2 cut(s) 98, 171
Bst2UI CCWGG 1 cut(s) 241
Bst4CI ACNGT 4 cut(s) 25, 158, 295, 805
Bst6I CTCTTC 2 cut(s) 110, 895
BstC8I GCNNGC 3 cut(s) 184, 341, 646
BstDEI CTNAG 2 cut(s) 165, 761
BstF5I GGATG 2 cut(s) 131, 201
BstFNI CGCG 1 cut(s) 341
BstHHI GCGC 2 cut(s) 341, 343
BstKTI GATC 2 cut(s) 101, 174
BstMAI GTCTC 2 cut(s) 201, 329
BstMBI GATC 2 cut(s) 98, 171
BstMWI GCNNNNNNNGC 3 cut(s) 512, 683, 959
BstNI CCWGG 1 cut(s) 241
BstNSI RCATGY 1 cut(s) 947
BstSCI CCNGG 1 cut(s) 239
BstSFI CTRYAG 2 cut(s) 582, 957
BstUI CGCG 1 cut(s) 341
BstX2I RGATCY 1 cut(s) 98
BstYI RGATCY 1 cut(s) 98
BsuRI GGCC 2 cut(s) 498, 634
BtsCI GGATG 2 cut(s) 131, 201
BtsI GCAGTG 1 cut(s) 251
BtsIMutI CAGTG 4 cut(s) 163, 251, 758, 785
BveI ACCTGC 1 cut(s) 334
Cac8I GCNNGC 3 cut(s) 184, 341, 646
CfoI GCGC 2 cut(s) 341, 343
Csp6I GTAC 4 cut(s) 26, 334, 472, 519
CviAII CATG 4 cut(s) 94, 387, 716, 944
CviQI GTAC 4 cut(s) 26, 334, 472, 519
DdeI CTNAG 2 cut(s) 165, 761
DpnI GATC 2 cut(s) 100, 173
DpnII GATC 2 cut(s) 98, 171
Eam1104I CTCTTC 2 cut(s) 110, 895
EarI CTCTTC 2 cut(s) 110, 895
Ecl136II GAGCTC 1 cut(s) 953
Eco147I AGGCCT 2 cut(s) 498, 634
Eco24I GRGCYC 1 cut(s) 955
Eco53kI GAGCTC 1 cut(s) 953
Eco57I CTGAAG 1 cut(s) 948
EcoICRI GAGCTC 1 cut(s) 953
EcoRI GAATTC 1 cut(s) 555
EcoRII CCWGG 1 cut(s) 239
EcoT38I GRGCYC 1 cut(s) 955
FaeI CATG 4 cut(s) 97, 390, 719, 947
FaqI GGGAC 2 cut(s) 469, 982
FatI CATG 4 cut(s) 93, 386, 715, 943
FokI GGATG 2 cut(s) 118, 188
FriOI GRGCYC 1 cut(s) 955
FspBI CTAG 5 cut(s) 54, 362, 566, 645, 674
GlaI GCGC 2 cut(s) 340, 342
GsuI CTGGAG 2 cut(s) 223, 966
HaeIII GGCC 2 cut(s) 498, 634
HhaI GCGC 2 cut(s) 341, 343
Hin1II CATG 4 cut(s) 97, 390, 719, 947
Hin6I GCGC 2 cut(s) 339, 341
HinP1I GCGC 2 cut(s) 339, 341
HindIII AAGCTT 1 cut(s) 918
HinfI GANTC 3 cut(s) 74, 309, 382
HphI GGTGA 5 cut(s) 619, 668, 681, 745, 877
Hpy166II GTNNAC 2 cut(s) 529, 610
Hpy188I TCNGA 6 cut(s) 73, 168, 206, 314, 329, 728
Hpy188III TCNNGA 3 cut(s) 191, 220, 566
Hpy8I GTNNAC 2 cut(s) 529, 610
HpyAV CCTTC 7 cut(s) 197, 206, 226, 324, 647, 763, 856
HpyCH4III ACNGT 4 cut(s) 25, 158, 295, 805
HpyCH4V TGCA 3 cut(s) 256, 392, 815
HpyF10VI GCNNNNNNNGC 3 cut(s) 512, 683, 959
HpyF3I CTNAG 2 cut(s) 165, 761
Hsp92II CATG 4 cut(s) 97, 390, 719, 947
HspAI GCGC 2 cut(s) 339, 341
KpnI GGTACC 1 cut(s) 475
Kzo9I GATC 2 cut(s) 98, 171
LguI GCTCTTC 1 cut(s) 895
LmnI GCTCC 1 cut(s) 958
LweI GCATC 1 cut(s) 297
MaeI CTAG 5 cut(s) 54, 362, 566, 645, 674
MaeIII GTNAC 2 cut(s) 409, 667
MalI GATC 2 cut(s) 100, 173
MboI GATC 2 cut(s) 98, 171
MboII GAAGA 8 cut(s) 97, 181, 778, 880, 883, 912, 923, 926
MflI RGATCY 1 cut(s) 98
MhlI GDGCHC 1 cut(s) 955
MluCI AATT 6 cut(s) 353, 419, 430, 489, 555, 617
MmeI TCCRAC 1 cut(s) 919
MnlI CCTC 8 cut(s) 390, 541, 676, 756, 757, 873, 1017, 1020
MseI TTAA 1 cut(s) 143
MslI CAYNNNNRTG 2 cut(s) 371, 605
MspR9I CCNGG 1 cut(s) 241
MvaI CCWGG 1 cut(s) 241
MvnI CGCG 1 cut(s) 341
MwoI GCNNNNNNNGC 3 cut(s) 512, 683, 959
NdeII GATC 2 cut(s) 98, 171
NheI GCTAGC 1 cut(s) 644
NlaIII CATG 4 cut(s) 97, 390, 719, 947
NlaIV GGNNCC 1 cut(s) 473
NmuCI GTSAC 1 cut(s) 667
NspI RCATGY 1 cut(s) 947
OliI CACNNNNGTG 1 cut(s) 605
PauI GCGCGC 1 cut(s) 339
PceI AGGCCT 2 cut(s) 498, 634
PciI ACATGT 1 cut(s) 943
PciSI GCTCTTC 1 cut(s) 895
PfeI GAWTC 3 cut(s) 74, 309, 382
PfoI TCCNGGA 1 cut(s) 239
PscI ACATGT 1 cut(s) 943
PsiI TTATAA 1 cut(s) 510
Psp124BI GAGCTC 1 cut(s) 955
Psp6I CCWGG 1 cut(s) 239
PspGI CCWGG 1 cut(s) 239
PspN4I GGNNCC 1 cut(s) 473
PsuI RGATCY 1 cut(s) 98
PteI GCGCGC 1 cut(s) 339
RsaI GTAC 4 cut(s) 27, 335, 473, 520
RsaNI GTAC 4 cut(s) 26, 334, 472, 519
RseI CAYNNNNRTG 2 cut(s) 371, 605
SacI GAGCTC 1 cut(s) 955
SapI GCTCTTC 1 cut(s) 895
SaqAI TTAA 1 cut(s) 143
Sau3AI GATC 2 cut(s) 98, 171
ScrFI CCNGG 1 cut(s) 241
SduI GDGCHC 1 cut(s) 955
SfaNI GCATC 1 cut(s) 297
SfcI CTRYAG 2 cut(s) 582, 957
SmiMI CAYNNNNRTG 2 cut(s) 371, 605
Sse9I AATT 6 cut(s) 353, 419, 430, 489, 555, 617
SseBI AGGCCT 2 cut(s) 498, 634
SspMI CTAG 5 cut(s) 54, 362, 566, 645, 674
SstI GAGCTC 1 cut(s) 955
StuI AGGCCT 2 cut(s) 498, 634
StyD4I CCNGG 1 cut(s) 239
TaaI ACNGT 4 cut(s) 25, 158, 295, 805
TaqI TCGA 2 cut(s) 192, 878
TasI AATT 6 cut(s) 353, 419, 430, 489, 555, 617
TfiI GAWTC 3 cut(s) 74, 309, 382
Tru1I TTAA 1 cut(s) 143
Tru9I TTAA 1 cut(s) 143
TscAI CASTG 4 cut(s) 163, 258, 765, 785
TseFI GTSAC 1 cut(s) 667
Tsp45I GTSAC 1 cut(s) 667
TspDTI ATGAA 6 cut(s) 49, 120, 254, 347, 630, 924
TspRI CASTG 4 cut(s) 163, 258, 765, 785
XapI RAATTY 2 cut(s) 353, 555
XbaI TCTAGA 1 cut(s) 565
XceI RCATGY 1 cut(s) 947
XspI CTAG 5 cut(s) 54, 362, 566, 645, 674
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.