pycom04g06390

Protein of unknown function (DUF1191)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0013131
Physical Location & Seq
Reverse (-)
6465213 .. 6465827
615 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g06390.1

Sequence Viewer

Length: 615 bp
ATGATAGTTAGACAAAATTTGGGATATAATTGGTCCTCAATATATTATGCCAACTATGACCTATCTGGATATCAGCTTGTTTCTCCAATTTTAGGCCTCTTAGCATATAACGCCGGTATGGATGTGAACTTCAGCAACCCTTTTGAGCTTGGTATTGAAGCTGGAGAAAAACCCATCAGCATTGACTTTAAAAACATCACAAGGGTGAACAATGAATTGGGTACAAGGCCATTATGTGCAAGTTTTGAAGGTGATGGCAAAGTGACATTGGCAAGGGAAACTAAACCTTACATTTGTGTTGCAAAAAGGCATGGACATTTCGGGTTGGTCATTGAGAAGCCTATTCCGGTGCAGTTGAGGAAGAGAGTGAGCCAGTGGAAAATAGCGGTTGGAAGCTCGGTTGGATCTGCATTGGGTGCTTTTCTTTTGGGACTGCTTCTAGTGGCAATGCTTGTGAAGGGGAAGAAGCAGTCGAGGATGGTGGAGATGGAGAGAAGGGCTTATGAAGAGGAAGCTTTACAGGTATCAATGGTTGGACATGTGAGGGCTCCTACCGCATCGGGTACTCGAACAACACCAGCAATTGAGCATGCGTATATACCTCCTCCTCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1191

Protein Analysis

205

Amino Acids

22.49

Weight (kDa)

9.34

Isoelectric Point (pI)

38.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1191 PF06697 1 - 112 2.3e-33 Protein of unknown function (DUF1191)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013131)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G11950 AT4G22900
fragaria_vesca FvH4_5g01210
malus_domestica MD00G1122700.v1.1 MD04G1070700.v1.1
prunus_persica Prupe.5G087200_v2.0.a1
pyrus_communis pycom04g06390 pycom06g06860
rosa_chinensis RchiOBHm_Chr7g0199881
rosa_laevigata RLG00000003763
rosa_multiflora Rmu_sc0002748.1_g000013
rosa_roxburghii Rroxscaffold_3G00256410
rosa_rugosa Rorug07G0056800
rosa_samantha Rh7AG182100 Rh7BG185000 Rh7CG191600 Rh7DG184900
rosa_wichuraiana Rw7G015970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 386, 555
AclWI GGATC 1 cut(s) 412
AcsI RAATTY 1 cut(s) 16
AcuI CTGAAG 1 cut(s) 115
AfaI GTAC 2 cut(s) 223, 565
AfiI CCNNNNNNNGG 1 cut(s) 92
AflIII ACRYGT 1 cut(s) 538
AgsI TTSAA 2 cut(s) 158, 248
AjuI GAANNNNNNNTTGG 2 cut(s) 200, 232
AleI CACNNNNGTG 1 cut(s) 203
AluBI AGCT 5 cut(s) 76, 148, 161, 396, 515
AluI AGCT 5 cut(s) 76, 148, 161, 396, 515
AlwI GGATC 1 cut(s) 412
AoxI GGCC 2 cut(s) 94, 227
ApoI RAATTY 1 cut(s) 16
AspS9I GGNCC 1 cut(s) 33
AsuHPI GGTGA 2 cut(s) 217, 263
AvaII GGWCC 1 cut(s) 33
BanII GRGCYC 1 cut(s) 550
BccI CCATC 4 cut(s) 182, 248, 472, 481
BfaI CTAG 1 cut(s) 440
Bme18I GGWCC 1 cut(s) 33
BmgT120I GGNCC 1 cut(s) 33
BmiI GGNNCC 1 cut(s) 549
BmsI GCATC 1 cut(s) 566
BpmI CTGGAG 1 cut(s) 183
BsaWI WCCGGW 1 cut(s) 346
Bsc4I CCNNNNNNNGG 1 cut(s) 92
Bse118I RCCGGY 1 cut(s) 113
Bse1I ACTGG 1 cut(s) 373
Bse3DI GCAATG 1 cut(s) 453
BseGI GGATG 2 cut(s) 127, 483
BseLI CCNNNNNNNGG 1 cut(s) 92
BseMI GCAATG 1 cut(s) 453
BseNI ACTGG 1 cut(s) 373
BseRI GAGGAG 2 cut(s) 594, 597
BsgI GTGCAG 1 cut(s) 371
BshFI GGCC 2 cut(s) 96, 229
BsiSI CCGG 2 cut(s) 114, 347
BslFI GGGAC 1 cut(s) 444
BslI CCNNNNNNNGG 1 cut(s) 92
BsmFI GGGAC 1 cut(s) 444
BsnI GGCC 2 cut(s) 96, 229
Bsp1286I GDGCHC 1 cut(s) 550
Bsp143I GATC 1 cut(s) 404
BspACI CCGC 2 cut(s) 386, 555
BspANI GGCC 2 cut(s) 96, 229
BspLI GGNNCC 1 cut(s) 549
BspPI GGATC 1 cut(s) 412
BsrDI GCAATG 1 cut(s) 453
BsrFI RCCGGY 1 cut(s) 113
BsrI ACTGG 1 cut(s) 373
BssAI RCCGGY 1 cut(s) 113
BssMI GATC 1 cut(s) 404
Bst6I CTCTTC 2 cut(s) 356, 501
BstAPI GCANNNNNTGC 1 cut(s) 416
BstC8I GCNNGC 1 cut(s) 591
BstDEI CTNAG 1 cut(s) 100
BstF5I GGATG 2 cut(s) 127, 483
BstKTI GATC 1 cut(s) 407
BstMBI GATC 1 cut(s) 404
BstMWI GCNNNNNNNGC 3 cut(s) 110, 416, 554
BstNSI RCATGY 2 cut(s) 542, 593
BstX2I RGATCY 1 cut(s) 404
BstYI RGATCY 1 cut(s) 404
BsuRI GGCC 2 cut(s) 96, 229
BtsCI GGATG 2 cut(s) 127, 483
BtsIMutI CAGTG 2 cut(s) 380, 610
Cac8I GCNNGC 1 cut(s) 591
Cfr10I RCCGGY 1 cut(s) 113
Cfr13I GGNCC 1 cut(s) 33
Csp6I GTAC 2 cut(s) 222, 564
CviAII CATG 3 cut(s) 311, 539, 590
CviQI GTAC 2 cut(s) 222, 564
DdeI CTNAG 1 cut(s) 100
DpnI GATC 1 cut(s) 406
DpnII GATC 1 cut(s) 404
DraI TTTAAA 1 cut(s) 190
Eam1104I CTCTTC 2 cut(s) 356, 501
EarI CTCTTC 2 cut(s) 356, 501
Eco147I AGGCCT 1 cut(s) 96
Eco24I GRGCYC 1 cut(s) 550
Eco32I GATATC 1 cut(s) 71
Eco47I GGWCC 1 cut(s) 33
Eco57I CTGAAG 1 cut(s) 115
EcoRV GATATC 1 cut(s) 71
EcoT38I GRGCYC 1 cut(s) 550
FaeI CATG 3 cut(s) 314, 542, 593
FaqI GGGAC 1 cut(s) 444
FatI CATG 3 cut(s) 310, 538, 589
FokI GGATG 2 cut(s) 134, 490
FriOI GRGCYC 1 cut(s) 550
FspBI CTAG 1 cut(s) 440
GsuI CTGGAG 1 cut(s) 183
HaeIII GGCC 2 cut(s) 96, 229
HapII CCGG 2 cut(s) 114, 347
Hin1II CATG 3 cut(s) 314, 542, 593
HindIII AAGCTT 1 cut(s) 513
HpaII CCGG 2 cut(s) 114, 347
HphI GGTGA 2 cut(s) 217, 263
Hpy166II GTNNAC 2 cut(s) 127, 208
Hpy188III TCNNGA 1 cut(s) 66
Hpy8I GTNNAC 2 cut(s) 127, 208
HpyAV CCTTC 3 cut(s) 242, 451, 489
HpyCH4V TGCA 4 cut(s) 239, 302, 352, 410
HpyF10VI GCNNNNNNNGC 3 cut(s) 110, 416, 554
HpyF3I CTNAG 1 cut(s) 100
Hsp92II CATG 3 cut(s) 314, 542, 593
Kzo9I GATC 1 cut(s) 404
LmnI GCTCC 1 cut(s) 553
LpnPI CCDG 7 cut(s) 51, 127, 147, 360, 386, 506, 591
LweI GCATC 1 cut(s) 566
MaeI CTAG 1 cut(s) 440
MaeIII GTNAC 1 cut(s) 262
MalI GATC 1 cut(s) 406
MboI GATC 1 cut(s) 404
MboII GAAGA 3 cut(s) 373, 475, 518
MfeI CAATTG 1 cut(s) 582
MflI RGATCY 1 cut(s) 404
MhlI GDGCHC 1 cut(s) 550
MluCI AATT 5 cut(s) 16, 28, 87, 215, 582
MmeI TCCRAC 3 cut(s) 370, 382, 514
MnlI CCTC 8 cut(s) 46, 107, 351, 468, 502, 537, 612, 615
MseI TTAA 1 cut(s) 189
MslI CAYNNNNRTG 1 cut(s) 203
MspI CCGG 2 cut(s) 114, 347
MunI CAATTG 1 cut(s) 582
MwoI GCNNNNNNNGC 3 cut(s) 110, 416, 554
NdeII GATC 1 cut(s) 404
NlaIII CATG 3 cut(s) 314, 542, 593
NlaIV GGNNCC 1 cut(s) 549
NmuCI GTSAC 1 cut(s) 262
NspI RCATGY 2 cut(s) 542, 593
OliI CACNNNNGTG 1 cut(s) 203
PaeI GCATGC 1 cut(s) 593
PceI AGGCCT 1 cut(s) 96
PciI ACATGT 1 cut(s) 538
PscI ACATGT 1 cut(s) 538
PspN4I GGNNCC 1 cut(s) 549
PspPI GGNCC 1 cut(s) 33
PsuI RGATCY 1 cut(s) 404
RsaI GTAC 2 cut(s) 223, 565
RsaNI GTAC 2 cut(s) 222, 564
RseI CAYNNNNRTG 1 cut(s) 203
SaqAI TTAA 1 cut(s) 189
Sau3AI GATC 1 cut(s) 404
Sau96I GGNCC 1 cut(s) 33
SduI GDGCHC 1 cut(s) 550
SfaNI GCATC 1 cut(s) 566
SinI GGWCC 1 cut(s) 33
SmiMI CAYNNNNRTG 1 cut(s) 203
SphI GCATGC 1 cut(s) 593
Sse9I AATT 5 cut(s) 16, 28, 87, 215, 582
SseBI AGGCCT 1 cut(s) 96
SsiI CCGC 2 cut(s) 386, 555
SspMI CTAG 1 cut(s) 440
StuI AGGCCT 1 cut(s) 96
TaqI TCGA 2 cut(s) 473, 568
TasI AATT 5 cut(s) 16, 28, 87, 215, 582
Tru1I TTAA 1 cut(s) 189
Tru9I TTAA 1 cut(s) 189
TscAI CASTG 1 cut(s) 380
TseFI GTSAC 1 cut(s) 262
Tsp45I GTSAC 1 cut(s) 262
TspDTI ATGAA 2 cut(s) 228, 519
TspRI CASTG 1 cut(s) 380
VpaK11BI GGWCC 1 cut(s) 33
XapI RAATTY 1 cut(s) 16
XceI RCATGY 2 cut(s) 542, 593
XspI CTAG 1 cut(s) 440
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.