Rorug07G0056800

Protein of unknown function (DUF1191)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0013131
Physical Location & Seq
Forward (+)
4089186 .. 4090789
1604 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0056800.1

Sequence Viewer

Length: 1368 bp
ATGCAAGGGATATTGGGTTTGAAAACACATATCCCAAAAGAGAAGGAAGCGAGTTTTAGAGTTGCATGGAAAAGGAAATTCCAACAAGAAAATCCAACTGCTGTTGATGTGAATTTGGATGTCTTTGGATTGTGGGCTTATGACTGTGCCAAGGCACTAGCCATGGCAGTAGAACATGTTGGGAGTGGTAGAAACTTCACCTTCGAAAAGATGAATTCTTCTGGTAGTTCCAGTGATTTAGAGAATTTTGGGGTCTCTCAGATGGGTCCTCAGCTTGTCCAAGCGCTACTCGGTACAAGTTTTATAGGATTTTCAGGAAATTTTAGTCTCGTAAAAGGGCAACTACAATCATCAACTTTTGAGATTGTGAATCTGATTGGAAATGGGGAAAAGGTGATTGGATTTTGGACATCCCAAAACGGACTTGTAAGAAACTTCAGTTCTGCTTCTAATGCTAGTCTTGGACCTATTTTATGGCCAGGAGACATCTCCTCTGCTCCAAGAGGTTGGCAGATTCCTACAAGTCCCCAGAAGAAGTTAAAAATTTTAGTTCCAGTCAATCTAGGGTTTAATGAATTTGTGAAATCGACATATGATCGTAGCACTAACACAACCAGGGTCACTGATGGATACTGTTTACAAGTCTTTAAAGCTGCAAGTCGAGCATTACCCTATGCTTACGAATTTTATGCTTATGCAAAGCCTAATGGTGAGAGTAATGGTAGTTACGACGATTTAGTCAAGGAAGTATTCCGAGGGAACTATGATGCTGCAGTAGGGGATATAACCATTACACCGGACAGGTTCCTGTATGTTGACTTCACATTGCCATACACAGAATCCGGGGTATACATGATTGTGCCCCTTAAAGACCACGGTAAGAACACTTGGGTGTTTTTGGATCCTTTGACTTGGGACCTTTGGTTAACAACCGGCTGTTTTTTCGTATTCATTGGATTTGTGGTATGGGTTCTTGAACATCGAATAAACGAGGATTTCCGCGGGCCTAAAAGTCACCAAATTGGCACAAGCTTTTGGTTCGCTTTCTCAACCATGGGGAGCGAGTGCATGGTTAGTAACTTGGCTAGGTTCGTAGTGGTCATCTGGTGTGTGGTAGTCCTTATATTGACCCAGAGCTATACCGCAAGTTTAACTTCAATGTTGACAATTCAGCAGCTCCAACCAACTATTACTGATGTACACTTGCTCGTGAAGAATGGACACAGTGTTGGATATCAAGAAGGTTCTTTTGTTAAGGAGATTTTGAAGAAACTAGGGTTCACGGACGACAAACTTAAGGTCTATAATTCCACTGAATATTTGCATCAATGCAACTTTTTCAAAATGGTAGTGCAAATGGTGGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1191

Protein Analysis

455

Amino Acids

50.93

Weight (kDa)

7.07

Isoelectric Point (pI)

27.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ANF_receptor PF01094 1 - 127 5.1e-15 Receptor family ligand binding region
Lig_chan-Glu_bd PF10613 193 - 287 3.8e-12 Ligated ion channel L-glutamate- and glycine-binding site
Lig_chan PF00060 304 - 406 5e-28 Ligand-gated ion channel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013131)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G11950 AT4G22900
fragaria_vesca FvH4_5g01210
malus_domestica MD00G1122700.v1.1 MD04G1070700.v1.1
prunus_persica Prupe.5G087200_v2.0.a1
pyrus_communis pycom04g06390 pycom06g06860
rosa_chinensis RchiOBHm_Chr7g0199881
rosa_laevigata RLG00000003763
rosa_multiflora Rmu_sc0002748.1_g000013
rosa_roxburghii Rroxscaffold_3G00256410
rosa_rugosa Rorug07G0056800
rosa_samantha Rh7AG182100 Rh7BG185000 Rh7CG191600 Rh7DG184900
rosa_wichuraiana Rw7G015970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 737
AccI GTMKAC 1 cut(s) 849
AccII CGCG 1 cut(s) 1002
AciI CCGC 3 cut(s) 1000, 1002, 1143
AclWI GGATC 2 cut(s) 896, 909
AcoI YGGCCR 1 cut(s) 476
AcsI RAATTY 8 cut(s) 77, 112, 214, 244, 319, 543, 575, 683
AcuI CTGAAG 1 cut(s) 421
AfaI GTAC 2 cut(s) 295, 1200
AfeI AGCGCT 1 cut(s) 285
AflII CTTAAG 1 cut(s) 1295
AflIII ACRYGT 1 cut(s) 175
AgsI TTSAA 5 cut(s) 22, 977, 1158, 1267, 1342
AjnI CCWGG 2 cut(s) 478, 614
AjuI GAANNNNNNNTTGG 2 cut(s) 381, 413
AleI CACNNNNGTG 1 cut(s) 890
AluBI AGCT 5 cut(s) 274, 653, 1032, 1137, 1177
AluI AGCT 5 cut(s) 274, 653, 1032, 1137, 1177
Alw26I GTCTC 3 cut(s) 259, 332, 477
AlwI GGATC 2 cut(s) 896, 909
Aor51HI AGCGCT 1 cut(s) 285
AoxI GGCC 2 cut(s) 476, 1004
ApeKI GCWGC 3 cut(s) 653, 770, 1174
ApoI RAATTY 8 cut(s) 77, 112, 214, 244, 319, 543, 575, 683
ArsI GACNNNNNNTTYG 2 cut(s) 1284, 1316
AspLEI GCGC 1 cut(s) 286
AspS9I GGNCC 4 cut(s) 266, 464, 916, 1004
AsuC2I CCSGG 1 cut(s) 844
AsuHPI GGTGA 4 cut(s) 190, 406, 722, 1007
AsuII TTCGAA 1 cut(s) 204
AvaII GGWCC 3 cut(s) 266, 464, 916
BaeGI GKGCMC 1 cut(s) 864
BalI TGGCCA 1 cut(s) 478
BamHI GGATCC 1 cut(s) 901
BarI GAAGNNNNNNTAC 2 cut(s) 803, 835
BauI CACGAG 1 cut(s) 1208
BbvCI CCTCAGC 1 cut(s) 270
BbvI GCAGC 3 cut(s) 640, 757, 1186
BccI CCATC 2 cut(s) 256, 620
BcgI CGANNNNNNTGC 2 cut(s) 671, 705
BciT130I CCWGG 2 cut(s) 480, 616
BciVI GTATCC 1 cut(s) 623
BcnI CCSGG 1 cut(s) 844
BcoDI GTCTC 3 cut(s) 259, 332, 477
BfaI CTAG 5 cut(s) 158, 456, 563, 1086, 1274
BfmI CTRYAG 1 cut(s) 771
BfoI RGCGCY 1 cut(s) 287
BfrI CTTAAG 1 cut(s) 1295
BfuI GTATCC 1 cut(s) 623
BisI GCNGC 3 cut(s) 654, 771, 1175
BlsI GCNGC 3 cut(s) 655, 772, 1176
Bme1390I CCNGG 3 cut(s) 480, 616, 844
Bme18I GGWCC 3 cut(s) 266, 464, 916
BmgT120I GGNCC 4 cut(s) 266, 464, 916, 1004
BmiI GGNNCC 4 cut(s) 267, 806, 903, 917
BmrFI CCNGG 3 cut(s) 480, 616, 844
BmsI GCATC 2 cut(s) 757, 1333
Bpu10I CCTNAGC 1 cut(s) 270
Bpu14I TTCGAA 1 cut(s) 204
BpuMI CCSGG 1 cut(s) 844
BsaI GGTCTC 1 cut(s) 259
BsaJI CCNNGG 8 cut(s) 150, 162, 615, 754, 843, 874, 1000, 1053
BsaWI WCCGGW 1 cut(s) 796
Bse118I RCCGGY 1 cut(s) 932
Bse1I ACTGG 2 cut(s) 231, 554
Bse3DI GCAATG 1 cut(s) 824
BseBI CCWGG 2 cut(s) 480, 616
BseDI CCNNGG 8 cut(s) 150, 162, 615, 754, 843, 874, 1000, 1053
BseGI GGATG 2 cut(s) 124, 410
BseMI GCAATG 1 cut(s) 824
BseMII CTCAG 2 cut(s) 272, 284
BseNI ACTGG 2 cut(s) 231, 554
BseRI GAGGAG 1 cut(s) 481
BseSI GKGCMC 1 cut(s) 864
BseXI GCAGC 3 cut(s) 640, 757, 1186
Bsh1236I CGCG 1 cut(s) 1002
BshFI GGCC 2 cut(s) 478, 1006
BsiSI CCGG 3 cut(s) 797, 843, 933
BslFI GGGAC 2 cut(s) 510, 929
BsmAI GTCTC 3 cut(s) 259, 332, 477
BsmFI GGGAC 2 cut(s) 510, 929
BsnI GGCC 2 cut(s) 478, 1006
Bso31I GGTCTC 1 cut(s) 259
Bsp119I TTCGAA 1 cut(s) 204
Bsp1286I GDGCHC 1 cut(s) 864
Bsp1407I TGTACA 1 cut(s) 1198
Bsp143I GATC 2 cut(s) 595, 901
Bsp19I CCATGG 2 cut(s) 162, 1053
BspACI CCGC 3 cut(s) 1000, 1002, 1143
BspANI GGCC 2 cut(s) 478, 1006
BspCNI CTCAG 2 cut(s) 271, 283
BspFNI CGCG 1 cut(s) 1002
BspLI GGNNCC 4 cut(s) 267, 806, 903, 917
BspMAI CTGCAG 1 cut(s) 775
BspPI GGATC 2 cut(s) 896, 909
BspT104I TTCGAA 1 cut(s) 204
BspTI CTTAAG 1 cut(s) 1295
BspTNI GGTCTC 1 cut(s) 259
BsrDI GCAATG 1 cut(s) 824
BsrFI RCCGGY 1 cut(s) 932
BsrGI TGTACA 1 cut(s) 1198
BsrI ACTGG 2 cut(s) 231, 554
BssAI RCCGGY 1 cut(s) 932
BssECI CCNNGG 8 cut(s) 150, 162, 615, 754, 843, 874, 1000, 1053
BssMI GATC 2 cut(s) 595, 901
BssNAI GTATAC 1 cut(s) 850
BssSI CACGAG 1 cut(s) 1208
BssT1I CCWWGG 3 cut(s) 150, 162, 1053
Bst1107I GTATAC 1 cut(s) 850
Bst2BI CACGAG 1 cut(s) 1208
Bst2UI CCWGG 2 cut(s) 480, 616
Bst4CI ACNGT 4 cut(s) 146, 635, 878, 1226
BstAFI CTTAAG 1 cut(s) 1295
BstAUI TGTACA 1 cut(s) 1198
BstBI TTCGAA 1 cut(s) 204
BstC8I GCNNGC 1 cut(s) 1004
BstDEI CTNAG 2 cut(s) 258, 270
BstDSI CCRYGG 4 cut(s) 162, 874, 1000, 1053
BstF5I GGATG 2 cut(s) 124, 410
BstFNI CGCG 1 cut(s) 1002
BstH2I RGCGCY 1 cut(s) 287
BstHHI GCGC 1 cut(s) 286
BstKTI GATC 2 cut(s) 598, 904
BstMAI GTCTC 3 cut(s) 259, 332, 477
BstMBI GATC 2 cut(s) 595, 901
BstMWI GCNNNNNNNGC 2 cut(s) 452, 662
BstNI CCWGG 2 cut(s) 480, 616
BstNSI RCATGY 1 cut(s) 179
BstSCI CCNGG 3 cut(s) 478, 614, 842
BstSFI CTRYAG 1 cut(s) 771
BstSLI GKGCMC 1 cut(s) 864
BstUI CGCG 1 cut(s) 1002
BstV1I GCAGC 3 cut(s) 640, 757, 1186
BstX2I RGATCY 1 cut(s) 901
BstXI CCANNNNNNTGG 1 cut(s) 507
BstYI RGATCY 1 cut(s) 901
BstZ17I GTATAC 1 cut(s) 850
BsuI GTATCC 1 cut(s) 623
BsuRI GGCC 2 cut(s) 478, 1006
BtgI CCRYGG 4 cut(s) 162, 874, 1000, 1053
BtsCI GGATG 2 cut(s) 124, 410
BtsIMutI CAGTG 4 cut(s) 238, 621, 1231, 1311
Cac8I GCNNGC 1 cut(s) 1004
CfoI GCGC 1 cut(s) 286
Cfr10I RCCGGY 1 cut(s) 932
Cfr13I GGNCC 4 cut(s) 266, 464, 916, 1004
Cfr42I CCGCGG 1 cut(s) 1003
Csp6I GTAC 2 cut(s) 294, 1199
CviAII CATG 6 cut(s) 66, 163, 176, 853, 1054, 1069
CviQI GTAC 2 cut(s) 294, 1199
DdeI CTNAG 2 cut(s) 258, 270
DpnI GATC 2 cut(s) 597, 903
DpnII GATC 2 cut(s) 595, 901
DraI TTTAAA 1 cut(s) 649
DrdI GACNNNNNNGTC 1 cut(s) 737
DseDI GACNNNNNNGTC 1 cut(s) 737
EaeI YGGCCR 1 cut(s) 476
Eco130I CCWWGG 3 cut(s) 150, 162, 1053
Eco31I GGTCTC 1 cut(s) 259
Eco32I GATATC 1 cut(s) 1235
Eco47I GGWCC 3 cut(s) 266, 464, 916
Eco47III AGCGCT 1 cut(s) 285
Eco57I CTGAAG 1 cut(s) 421
EcoO109I RGGNCCY 2 cut(s) 266, 916
EcoRI GAATTC 1 cut(s) 214
EcoRII CCWGG 2 cut(s) 478, 614
EcoRV GATATC 1 cut(s) 1235
EcoT14I CCWWGG 3 cut(s) 150, 162, 1053
ErhI CCWWGG 3 cut(s) 150, 162, 1053
FaeI CATG 6 cut(s) 69, 166, 179, 856, 1057, 1072
FalI AAGNNNNNCTT 2 cut(s) 1138, 1170
FaqI GGGAC 2 cut(s) 510, 929
FatI CATG 6 cut(s) 65, 162, 175, 852, 1053, 1068
FauI CCCGC 1 cut(s) 995
FauNDI CATATG 1 cut(s) 592
FblI GTMKAC 1 cut(s) 849
Fnu4HI GCNGC 3 cut(s) 654, 771, 1175
FokI GGATG 2 cut(s) 131, 397
Fsp4HI GCNGC 3 cut(s) 654, 771, 1175
FspBI CTAG 5 cut(s) 158, 456, 563, 1086, 1274
GlaI GCGC 1 cut(s) 285
GluI GCNGC 3 cut(s) 654, 771, 1175
HaeII RGCGCY 1 cut(s) 287
HaeIII GGCC 2 cut(s) 478, 1006
HapII CCGG 3 cut(s) 797, 843, 933
HhaI GCGC 1 cut(s) 286
Hin1II CATG 6 cut(s) 69, 166, 179, 856, 1057, 1072
Hin6I GCGC 1 cut(s) 284
HinP1I GCGC 1 cut(s) 284
HincII GTYRAC 3 cut(s) 817, 927, 1164
HindII GTYRAC 3 cut(s) 817, 927, 1164
HindIII AAGCTT 1 cut(s) 1030
HinfI GANTC 3 cut(s) 370, 514, 839
HpaI GTTAAC 1 cut(s) 927
HpaII CCGG 3 cut(s) 797, 843, 933
HphI GGTGA 4 cut(s) 190, 406, 722, 1007
Hpy166II GTNNAC 7 cut(s) 638, 817, 850, 927, 1164, 1201, 1281
Hpy188I TCNGA 3 cut(s) 261, 375, 755
Hpy188III TCNNGA 4 cut(s) 315, 974, 1210, 1238
Hpy8I GTNNAC 7 cut(s) 638, 817, 850, 927, 1164, 1201, 1281
Hpy99I CGWCG 1 cut(s) 734
HpyAV CCTTC 3 cut(s) 37, 211, 1235
HpyCH4III ACNGT 4 cut(s) 146, 635, 878, 1226
HpyCH4V TGCA 9 cut(s) 4, 65, 656, 698, 773, 1068, 1324, 1332, 1354
HpyF10VI GCNNNNNNNGC 2 cut(s) 452, 662
HpyF3I CTNAG 2 cut(s) 258, 270
Hsp92II CATG 6 cut(s) 69, 166, 179, 856, 1057, 1072
HspAI GCGC 1 cut(s) 284
KspAI GTTAAC 1 cut(s) 927
KspI CCGCGG 1 cut(s) 1003
Kzo9I GATC 2 cut(s) 595, 901
LmnI GCTCC 3 cut(s) 502, 1059, 1182
Lsp1109I GCAGC 3 cut(s) 640, 757, 1186
LweI GCATC 2 cut(s) 757, 1333
MaeI CTAG 5 cut(s) 158, 456, 563, 1086, 1274
MaeIII GTNAC 4 cut(s) 619, 725, 1013, 1076
MalI GATC 2 cut(s) 597, 903
MboI GATC 2 cut(s) 595, 901
MboII GAAGA 4 cut(s) 210, 544, 1225, 1279
MflI RGATCY 1 cut(s) 901
MhlI GDGCHC 1 cut(s) 864
MlsI TGGCCA 1 cut(s) 478
MluNI TGGCCA 1 cut(s) 478
MmeI TCCRAC 4 cut(s) 106, 119, 1204, 1210
MnlI CCTC 5 cut(s) 279, 497, 502, 749, 985
Mox20I TGGCCA 1 cut(s) 478
MscI TGGCCA 1 cut(s) 478
MseI TTAA 8 cut(s) 539, 570, 648, 867, 926, 1151, 1254, 1296
MslI CAYNNNNRTG 2 cut(s) 857, 890
Msp20I TGGCCA 1 cut(s) 478
MspA1I CMGCKG 1 cut(s) 1002
MspCI CTTAAG 1 cut(s) 1295
MspI CCGG 3 cut(s) 797, 843, 933
MspR9I CCNGG 3 cut(s) 480, 616, 844
MvaI CCWGG 2 cut(s) 480, 616
MvnI CGCG 1 cut(s) 1002
MwoI GCNNNNNNNGC 2 cut(s) 452, 662
NciI CCSGG 1 cut(s) 844
NcoI CCATGG 2 cut(s) 162, 1053
NdeI CATATG 1 cut(s) 592
NdeII GATC 2 cut(s) 595, 901
NlaIII CATG 6 cut(s) 69, 166, 179, 856, 1057, 1072
NlaIV GGNNCC 4 cut(s) 267, 806, 903, 917
NmuCI GTSAC 2 cut(s) 619, 1013
NspI RCATGY 1 cut(s) 179
NspV TTCGAA 1 cut(s) 204
OliI CACNNNNGTG 1 cut(s) 890
PciI ACATGT 1 cut(s) 175
PfeI GAWTC 3 cut(s) 370, 514, 839
PkrI GCNGC 3 cut(s) 655, 772, 1176
PpuMI RGGWCCY 2 cut(s) 266, 916
PscI ACATGT 1 cut(s) 175
Psp5II RGGWCCY 2 cut(s) 266, 916
Psp6I CCWGG 2 cut(s) 478, 614
PspGI CCWGG 2 cut(s) 478, 614
PspN4I GGNNCC 4 cut(s) 267, 806, 903, 917
PspPI GGNCC 4 cut(s) 266, 464, 916, 1004
PspPPI RGGWCCY 2 cut(s) 266, 916
PstI CTGCAG 1 cut(s) 775
PsuI RGATCY 1 cut(s) 901
RsaI GTAC 2 cut(s) 295, 1200
RsaNI GTAC 2 cut(s) 294, 1199
RseI CAYNNNNRTG 2 cut(s) 857, 890
SacII CCGCGG 1 cut(s) 1003
SaqAI TTAA 8 cut(s) 539, 570, 648, 867, 926, 1151, 1254, 1296
SatI GCNGC 3 cut(s) 654, 771, 1175
Sau3AI GATC 2 cut(s) 595, 901
Sau96I GGNCC 4 cut(s) 266, 464, 916, 1004
ScrFI CCNGG 3 cut(s) 480, 616, 844
SduI GDGCHC 1 cut(s) 864
SfaNI GCATC 2 cut(s) 757, 1333
SfcI CTRYAG 1 cut(s) 771
Sfr303I CCGCGG 1 cut(s) 1003
SfuI TTCGAA 1 cut(s) 204
SgrBI CCGCGG 1 cut(s) 1003
SinI GGWCC 3 cut(s) 266, 464, 916
SmiMI CAYNNNNRTG 2 cut(s) 857, 890
SmlI CTYRAG 1 cut(s) 1295
SmoI CTYRAG 1 cut(s) 1295
SsiI CCGC 3 cut(s) 1000, 1002, 1143
SspI AATATT 1 cut(s) 1319
SspMI CTAG 5 cut(s) 158, 456, 563, 1086, 1274
StyD4I CCNGG 3 cut(s) 478, 614, 842
StyI CCWWGG 3 cut(s) 150, 162, 1053
TaaI ACNGT 4 cut(s) 146, 635, 878, 1226
TaqI TCGA 4 cut(s) 204, 587, 661, 982
TatI WGTACW 1 cut(s) 1198
TfiI GAWTC 3 cut(s) 370, 514, 839
Tru1I TTAA 8 cut(s) 539, 570, 648, 867, 926, 1151, 1254, 1296
Tru9I TTAA 8 cut(s) 539, 570, 648, 867, 926, 1151, 1254, 1296
TscAI CASTG 4 cut(s) 238, 628, 1231, 1318
TseFI GTSAC 2 cut(s) 619, 1013
TseI GCWGC 3 cut(s) 653, 770, 1174
Tsp45I GTSAC 2 cut(s) 619, 1013
TspDTI ATGAA 3 cut(s) 227, 588, 940
TspGWI ACGGA 2 cut(s) 435, 1298
TspRI CASTG 4 cut(s) 238, 628, 1231, 1318
Vha464I CTTAAG 1 cut(s) 1295
VpaK11BI GGWCC 3 cut(s) 266, 464, 916
XapI RAATTY 8 cut(s) 77, 112, 214, 244, 319, 543, 575, 683
XceI RCATGY 1 cut(s) 179
XmiI GTMKAC 1 cut(s) 849
XspI CTAG 5 cut(s) 158, 456, 563, 1086, 1274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.