Rh7AG182100

Protein of unknown function (DUF1191)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0013131
Physical Location & Seq
Reverse (-)
16199606 .. 16200226
621 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG182100.1

Sequence Viewer

Length: 621 bp
ATGGTAGTTACACAAAAATTAGGATATAATTGGTCATCTATATATTATGCCAACTATGACTTATCTGGGTACCAGCTTGTGTCCCCAATTTTAGGCCTATTAGCTTATAATGCTGGTACTGATGTGAACTTTAGCAACCCTTTTGAGGTAGGAATTCAAGCTCTAGAAAATCCCATCACTATAGACTTCAAAAACATCACAAGGGTGAACAATGAATTAGGTGCTACAAGGCCTTTATGTGCTAGCTTTGAAGGTGATGGTAAAGTGACACTAGCAAAGGAGGCTTCACCTTACATTTGTGTTGCGAAAAGGCATGGTCATTTCGGATTGGTGATTGAGAAGCCTTCGCCAGTTCCACTGAGGAAGAAGGTTAGCCAGTGGAAAGTGGTGGTTGGTAGCACAGTTGGGTGTGCAATAGGTGTTCTTCTTCTGGGGTTGCTTCTGGTGGCAATGCTTGTGAAGGTGAAGAAGAACTCGAGGATTGTGGAGATGGAGAGAAGAGCTTATGAAGAAGAAGCTTTACAGGTATCAATGGTTGGACATGTTAGAGCTCCTACAGCTTCAGGGACACGAACTATTCCAGCGATTGAACAGGAGTATATACCTCCTCGTCCTCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1191

Protein Analysis

206

Amino Acids

22.62

Weight (kDa)

9.24

Isoelectric Point (pI)

36.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1191 PF06697 1 - 113 2.8e-31 Protein of unknown function (DUF1191)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013131)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G11950 AT4G22900
fragaria_vesca FvH4_5g01210
malus_domestica MD00G1122700.v1.1 MD04G1070700.v1.1
prunus_persica Prupe.5G087200_v2.0.a1
pyrus_communis pycom04g06390 pycom06g06860
rosa_chinensis RchiOBHm_Chr7g0199881
rosa_laevigata RLG00000003763
rosa_multiflora Rmu_sc0002748.1_g000013
rosa_roxburghii Rroxscaffold_3G00256410
rosa_rugosa Rorug07G0056800
rosa_samantha Rh7AG182100 Rh7BG185000 Rh7CG191600 Rh7DG184900
rosa_wichuraiana Rw7G015970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 108
Acc65I GGTACC 1 cut(s) 69
AccB1I GGYRCC 1 cut(s) 69
AcsI RAATTY 1 cut(s) 153
AcuI CTGAAG 1 cut(s) 546
AfaI GTAC 2 cut(s) 71, 118
AfiI CCNNNNNNNGG 2 cut(s) 92, 145
AflIII ACRYGT 1 cut(s) 541
AgsI TTSAA 4 cut(s) 158, 190, 251, 590
AleI CACNNNNGTG 1 cut(s) 203
AluBI AGCT 8 cut(s) 76, 104, 161, 246, 503, 518, 551, 560
AluI AGCT 8 cut(s) 76, 104, 161, 246, 503, 518, 551, 560
Alw21I GWGCWC 1 cut(s) 553
Ama87I CYCGRG 1 cut(s) 475
AoxI GGCC 2 cut(s) 94, 230
ApoI RAATTY 1 cut(s) 153
Asp718I GGTACC 1 cut(s) 69
AsuHPI GGTGA 5 cut(s) 217, 266, 279, 343, 475
AsuNHI GCTAGC 1 cut(s) 242
AvaI CYCGRG 1 cut(s) 475
BaeI ACNNNNGTAYC 2 cut(s) 108, 141
BanI GGYRCC 1 cut(s) 69
BanII GRGCYC 1 cut(s) 553
BarI GAAGNNNNNNTAC 2 cut(s) 504, 536
Bbv12I GWGCWC 1 cut(s) 553
BccI CCATC 3 cut(s) 182, 251, 484
BfaI CTAG 3 cut(s) 164, 243, 272
BfmI CTRYAG 2 cut(s) 180, 555
BmeT110I CYCGRG 1 cut(s) 475
BmiI GGNNCC 1 cut(s) 71
BmtI GCTAGC 1 cut(s) 246
Bsc4I CCNNNNNNNGG 2 cut(s) 92, 145
Bse1I ACTGG 2 cut(s) 350, 376
Bse3DI GCAATG 1 cut(s) 456
BseLI CCNNNNNNNGG 2 cut(s) 92, 145
BseMI GCAATG 1 cut(s) 456
BseMII CTCAG 1 cut(s) 350
BseNI ACTGG 2 cut(s) 350, 376
BseRI GAGGAG 1 cut(s) 597
BshFI GGCC 2 cut(s) 96, 232
BshNI GGYRCC 1 cut(s) 69
BsiHKAI GWGCWC 1 cut(s) 553
BsiHKCI CYCGRG 1 cut(s) 475
BslFI GGGAC 2 cut(s) 67, 580
BslI CCNNNNNNNGG 2 cut(s) 92, 145
BsmFI GGGAC 2 cut(s) 67, 580
BsnI GGCC 2 cut(s) 96, 232
BsoBI CYCGRG 1 cut(s) 475
Bsp1286I GDGCHC 1 cut(s) 553
BspANI GGCC 2 cut(s) 96, 232
BspCNI CTCAG 1 cut(s) 351
BspLI GGNNCC 1 cut(s) 71
BspOI GCTAGC 1 cut(s) 246
BspQI GCTCTTC 1 cut(s) 493
BspT107I GGYRCC 1 cut(s) 69
BsrDI GCAATG 1 cut(s) 456
BsrI ACTGG 2 cut(s) 350, 376
Bst4CI ACNGT 1 cut(s) 403
Bst6I CTCTTC 1 cut(s) 493
BstC8I GCNNGC 1 cut(s) 244
BstDEI CTNAG 1 cut(s) 359
BstMWI GCNNNNNNNGC 3 cut(s) 110, 281, 557
BstNSI RCATGY 1 cut(s) 545
BstSFI CTRYAG 2 cut(s) 180, 555
BsuRI GGCC 2 cut(s) 96, 232
BtsIMutI CAGTG 2 cut(s) 356, 383
Cac8I GCNNGC 1 cut(s) 244
Csp6I GTAC 2 cut(s) 70, 117
CviAII CATG 2 cut(s) 314, 542
CviQI GTAC 2 cut(s) 70, 117
DdeI CTNAG 1 cut(s) 359
Eam1104I CTCTTC 1 cut(s) 493
EarI CTCTTC 1 cut(s) 493
Ecl136II GAGCTC 1 cut(s) 551
Eco147I AGGCCT 2 cut(s) 96, 232
Eco24I GRGCYC 1 cut(s) 553
Eco53kI GAGCTC 1 cut(s) 551
Eco57I CTGAAG 1 cut(s) 546
Eco88I CYCGRG 1 cut(s) 475
EcoICRI GAGCTC 1 cut(s) 551
EcoRI GAATTC 1 cut(s) 153
EcoT38I GRGCYC 1 cut(s) 553
FaeI CATG 2 cut(s) 317, 545
FaqI GGGAC 2 cut(s) 67, 580
FatI CATG 2 cut(s) 313, 541
FriOI GRGCYC 1 cut(s) 553
FspBI CTAG 3 cut(s) 164, 243, 272
HaeIII GGCC 2 cut(s) 96, 232
Hin1II CATG 2 cut(s) 317, 545
HindIII AAGCTT 1 cut(s) 516
HphI GGTGA 5 cut(s) 217, 266, 279, 343, 475
Hpy166II GTNNAC 2 cut(s) 127, 208
Hpy188I TCNGA 1 cut(s) 326
Hpy188III TCNNGA 1 cut(s) 164
Hpy8I GTNNAC 2 cut(s) 127, 208
HpyAV CCTTC 4 cut(s) 245, 354, 361, 454
HpyCH4III ACNGT 1 cut(s) 403
HpyCH4V TGCA 1 cut(s) 413
HpyF10VI GCNNNNNNNGC 3 cut(s) 110, 281, 557
HpyF3I CTNAG 1 cut(s) 359
Hsp92II CATG 2 cut(s) 317, 545
KpnI GGTACC 1 cut(s) 73
LguI GCTCTTC 1 cut(s) 493
LmnI GCTCC 1 cut(s) 556
MaeI CTAG 3 cut(s) 164, 243, 272
MaeIII GTNAC 2 cut(s) 7, 265
MboII GAAGA 8 cut(s) 376, 416, 419, 478, 481, 510, 521, 524
MhlI GDGCHC 1 cut(s) 553
MluCI AATT 5 cut(s) 17, 28, 87, 153, 215
MmeI TCCRAC 1 cut(s) 517
MnlI CCTC 6 cut(s) 139, 274, 354, 471, 615, 618
MslI CAYNNNNRTG 1 cut(s) 203
MwoI GCNNNNNNNGC 3 cut(s) 110, 281, 557
NheI GCTAGC 1 cut(s) 242
NlaIII CATG 2 cut(s) 317, 545
NlaIV GGNNCC 1 cut(s) 71
NmuCI GTSAC 1 cut(s) 265
NspI RCATGY 1 cut(s) 545
OliI CACNNNNGTG 1 cut(s) 203
PaeR7I CTCGAG 1 cut(s) 475
PceI AGGCCT 2 cut(s) 96, 232
PciI ACATGT 1 cut(s) 541
PciSI GCTCTTC 1 cut(s) 493
PscI ACATGT 1 cut(s) 541
PsiI TTATAA 1 cut(s) 108
Psp124BI GAGCTC 1 cut(s) 553
PspN4I GGNNCC 1 cut(s) 71
PspXI VCTCGAGB 1 cut(s) 475
RsaI GTAC 2 cut(s) 71, 118
RsaNI GTAC 2 cut(s) 70, 117
RseI CAYNNNNRTG 1 cut(s) 203
SacI GAGCTC 1 cut(s) 553
SapI GCTCTTC 1 cut(s) 493
SduI GDGCHC 1 cut(s) 553
SfcI CTRYAG 2 cut(s) 180, 555
Sfr274I CTCGAG 1 cut(s) 475
SlaI CTCGAG 1 cut(s) 475
SmiMI CAYNNNNRTG 1 cut(s) 203
SmlI CTYRAG 1 cut(s) 475
SmoI CTYRAG 1 cut(s) 475
Sse9I AATT 5 cut(s) 17, 28, 87, 153, 215
SseBI AGGCCT 2 cut(s) 96, 232
SspMI CTAG 3 cut(s) 164, 243, 272
SstI GAGCTC 1 cut(s) 553
StuI AGGCCT 2 cut(s) 96, 232
TaaI ACNGT 1 cut(s) 403
TaqI TCGA 1 cut(s) 476
TasI AATT 5 cut(s) 17, 28, 87, 153, 215
TscAI CASTG 2 cut(s) 363, 383
TseFI GTSAC 1 cut(s) 265
Tsp45I GTSAC 1 cut(s) 265
TspDTI ATGAA 2 cut(s) 228, 522
TspRI CASTG 2 cut(s) 363, 383
XapI RAATTY 1 cut(s) 153
XbaI TCTAGA 1 cut(s) 163
XceI RCATGY 1 cut(s) 545
XhoI CTCGAG 1 cut(s) 475
XspI CTAG 3 cut(s) 164, 243, 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.