Rmu_sc0002748.1_g000013

Protein of unknown function (DUF1191)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002748.1
OG0013131
Physical Location & Seq
Forward (+)
41706 .. 42635
930 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002748.1_g000013.1.cds

Sequence Viewer

Length: 930 bp
atgggatctctcttcactctatcactcatacttctttcatccctatcattaacattatcaaacagtgaagctcagaagatcaaatcagctcgccttctcgaccttctcatccgagactacaccttcaagacctataaaacatactccaggacaggaacactgcacaatgttcatttaccagcaaacttctctggcatcacagttgatacagcgagattcagatgtggcagtctccgaaggtacggcgcgcaggtaaaggaatttcatctaggcattggtgtgtctgtgaatccatgtgcagagagggtaatggtggttacacaaaaattaggatataattggtcatctatatattatgccaactatgacttatctgggtaccagcttgtgtccccaattttaggcctattagcttataatgctggtactgatgtgaactttagcaacccttttgaggtaggaattcaagctctagaaaatcccatcactatagacttcaaaaacatcacaagggtgaacaatgaattaggtgctacaaggcctttatgtgctagctttgaaggtgatggtaaagtgacactagcaaaggaggcttcaccttacatttgtgttgcgaaaaggcatggtcatttcggattggtgattgagaagccctcgccagttccactgaggaagaaggttagccagtggaaagtggtggttggtagcacagttgggtgtgcaataggtgttttacttctggggttgcttctggtggcaatgcttgtgaaggtgaagaagaaatcgaggattgtggagatggagagaagagcttatgaagaagaagctttacaggtatcaatggttggacatgttagagctcctacagcttcagggacacgaactactccagcgattgaacaggagtatatacctcctcgtcctcgttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1191

Protein Analysis

309

Amino Acids

34.04

Weight (kDa)

9.61

Isoelectric Point (pI)

29.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013131)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G11950 AT4G22900
fragaria_vesca FvH4_5g01210
malus_domestica MD00G1122700.v1.1 MD04G1070700.v1.1
prunus_persica Prupe.5G087200_v2.0.a1
pyrus_communis pycom04g06390 pycom06g06860
rosa_chinensis RchiOBHm_Chr7g0199881
rosa_laevigata RLG00000003763
rosa_multiflora Rmu_sc0002748.1_g000013
rosa_roxburghii Rroxscaffold_3G00256410
rosa_rugosa Rorug07G0056800
rosa_samantha Rh7AG182100 Rh7BG185000 Rh7CG191600 Rh7DG184900
rosa_wichuraiana Rw7G015970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 417
Acc36I ACCTGC 1 cut(s) 241
Acc65I GGTACC 1 cut(s) 378
AccB1I GGYRCC 1 cut(s) 378
AccII CGCG 1 cut(s) 248
AclWI GGATC 1 cut(s) 13
AcsI RAATTY 2 cut(s) 260, 462
AcuI CTGAAG 1 cut(s) 855
AfaI GTAC 3 cut(s) 242, 380, 427
AfiI CCNNNNNNNGG 2 cut(s) 401, 454
AflIII ACRYGT 1 cut(s) 850
AgsI TTSAA 5 cut(s) 127, 467, 499, 560, 899
AjnI CCWGG 1 cut(s) 146
AleI CACNNNNGTG 1 cut(s) 512
Alw21I GWGCWC 1 cut(s) 862
Alw26I GTCTC 2 cut(s) 108, 236
AlwI GGATC 1 cut(s) 13
AoxI GGCC 2 cut(s) 403, 539
ApoI RAATTY 2 cut(s) 260, 462
Asp718I GGTACC 1 cut(s) 378
AspLEI GCGC 2 cut(s) 248, 250
AsuHPI GGTGA 5 cut(s) 526, 575, 588, 652, 784
AsuNHI GCTAGC 1 cut(s) 551
BaeI ACNNNNGTAYC 2 cut(s) 417, 450
BanI GGYRCC 1 cut(s) 378
BanII GRGCYC 1 cut(s) 862
BarI GAAGNNNNNNTAC 2 cut(s) 813, 845
Bbv12I GWGCWC 1 cut(s) 862
BccI CCATC 3 cut(s) 491, 560, 793
BceAI ACGGC 1 cut(s) 259
BciT130I CCWGG 1 cut(s) 148
BcoDI GTCTC 2 cut(s) 108, 236
BfaI CTAG 4 cut(s) 269, 473, 552, 581
BfmI CTRYAG 2 cut(s) 489, 864
BfuAI ACCTGC 1 cut(s) 241
Bme1390I CCNGG 1 cut(s) 148
BmiI GGNNCC 1 cut(s) 380
BmrFI CCNGG 1 cut(s) 148
BmsI GCATC 1 cut(s) 204
BmtI GCTAGC 1 cut(s) 555
BplI GAGNNNNNCTC 2 cut(s) 638, 670
BpmI CTGGAG 2 cut(s) 130, 873
Bsc4I CCNNNNNNNGG 2 cut(s) 401, 454
Bse1I ACTGG 2 cut(s) 659, 685
Bse3DI GCAATG 1 cut(s) 765
BseBI CCWGG 1 cut(s) 148
BseGI GGATG 2 cut(s) 38, 108
BseLI CCNNNNNNNGG 2 cut(s) 401, 454
BseMI GCAATG 1 cut(s) 765
BseMII CTCAG 2 cut(s) 86, 659
BseNI ACTGG 2 cut(s) 659, 685
BsePI GCGCGC 1 cut(s) 246
BseRI GAGGAG 1 cut(s) 906
BsgI GTGCAG 2 cut(s) 146, 318
Bsh1236I CGCG 1 cut(s) 248
BshFI GGCC 2 cut(s) 405, 541
BshNI GGYRCC 1 cut(s) 378
BsiHKAI GWGCWC 1 cut(s) 862
BslFI GGGAC 2 cut(s) 376, 889
BslI CCNNNNNNNGG 2 cut(s) 401, 454
BsmAI GTCTC 2 cut(s) 108, 236
BsmFI GGGAC 2 cut(s) 376, 889
BsnI GGCC 2 cut(s) 405, 541
Bsp1286I GDGCHC 1 cut(s) 862
Bsp143I GATC 2 cut(s) 5, 78
BspANI GGCC 2 cut(s) 405, 541
BspCNI CTCAG 2 cut(s) 85, 660
BspFNI CGCG 1 cut(s) 248
BspLI GGNNCC 1 cut(s) 380
BspMI ACCTGC 1 cut(s) 241
BspOI GCTAGC 1 cut(s) 555
BspPI GGATC 1 cut(s) 13
BspQI GCTCTTC 1 cut(s) 802
BspT107I GGYRCC 1 cut(s) 378
BsrDI GCAATG 1 cut(s) 765
BsrI ACTGG 2 cut(s) 659, 685
BssHII GCGCGC 1 cut(s) 246
BssMI GATC 2 cut(s) 5, 78
Bst2UI CCWGG 1 cut(s) 148
Bst4CI ACNGT 3 cut(s) 65, 202, 712
Bst6I CTCTTC 2 cut(s) 17, 802
BstC8I GCNNGC 3 cut(s) 91, 248, 553
BstDEI CTNAG 2 cut(s) 72, 668
BstF5I GGATG 2 cut(s) 38, 108
BstFNI CGCG 1 cut(s) 248
BstHHI GCGC 2 cut(s) 248, 250
BstKTI GATC 2 cut(s) 8, 81
BstMAI GTCTC 2 cut(s) 108, 236
BstMBI GATC 2 cut(s) 5, 78
BstMWI GCNNNNNNNGC 3 cut(s) 419, 590, 866
BstNI CCWGG 1 cut(s) 148
BstNSI RCATGY 1 cut(s) 854
BstSCI CCNGG 1 cut(s) 146
BstSFI CTRYAG 2 cut(s) 489, 864
BstUI CGCG 1 cut(s) 248
BstX2I RGATCY 1 cut(s) 5
BstYI RGATCY 1 cut(s) 5
BsuRI GGCC 2 cut(s) 405, 541
BtsCI GGATG 2 cut(s) 38, 108
BtsI GCAGTG 1 cut(s) 158
BtsIMutI CAGTG 4 cut(s) 70, 158, 665, 692
BveI ACCTGC 1 cut(s) 241
Cac8I GCNNGC 3 cut(s) 91, 248, 553
CfoI GCGC 2 cut(s) 248, 250
Csp6I GTAC 3 cut(s) 241, 379, 426
CviAII CATG 3 cut(s) 294, 623, 851
CviQI GTAC 3 cut(s) 241, 379, 426
DdeI CTNAG 2 cut(s) 72, 668
DpnI GATC 2 cut(s) 7, 80
DpnII GATC 2 cut(s) 5, 78
Eam1104I CTCTTC 2 cut(s) 17, 802
EarI CTCTTC 2 cut(s) 17, 802
Ecl136II GAGCTC 1 cut(s) 860
Eco147I AGGCCT 2 cut(s) 405, 541
Eco24I GRGCYC 1 cut(s) 862
Eco53kI GAGCTC 1 cut(s) 860
Eco57I CTGAAG 1 cut(s) 855
EcoICRI GAGCTC 1 cut(s) 860
EcoRI GAATTC 1 cut(s) 462
EcoRII CCWGG 1 cut(s) 146
EcoT38I GRGCYC 1 cut(s) 862
FaeI CATG 3 cut(s) 297, 626, 854
FaqI GGGAC 2 cut(s) 376, 889
FatI CATG 3 cut(s) 293, 622, 850
FokI GGATG 2 cut(s) 25, 95
FriOI GRGCYC 1 cut(s) 862
FspBI CTAG 4 cut(s) 269, 473, 552, 581
GlaI GCGC 2 cut(s) 247, 249
GsuI CTGGAG 2 cut(s) 130, 873
HaeIII GGCC 2 cut(s) 405, 541
HhaI GCGC 2 cut(s) 248, 250
Hin1II CATG 3 cut(s) 297, 626, 854
Hin6I GCGC 2 cut(s) 246, 248
HinP1I GCGC 2 cut(s) 246, 248
HindIII AAGCTT 1 cut(s) 825
HinfI GANTC 2 cut(s) 216, 289
HphI GGTGA 5 cut(s) 526, 575, 588, 652, 784
Hpy166II GTNNAC 2 cut(s) 436, 517
Hpy188I TCNGA 5 cut(s) 75, 113, 221, 236, 635
Hpy188III TCNNGA 3 cut(s) 98, 127, 473
Hpy8I GTNNAC 2 cut(s) 436, 517
HpyAV CCTTC 7 cut(s) 104, 113, 133, 231, 554, 670, 763
HpyCH4III ACNGT 3 cut(s) 65, 202, 712
HpyCH4V TGCA 3 cut(s) 163, 299, 722
HpyF10VI GCNNNNNNNGC 3 cut(s) 419, 590, 866
HpyF3I CTNAG 2 cut(s) 72, 668
Hsp92II CATG 3 cut(s) 297, 626, 854
HspAI GCGC 2 cut(s) 246, 248
KpnI GGTACC 1 cut(s) 382
Kzo9I GATC 2 cut(s) 5, 78
LguI GCTCTTC 1 cut(s) 802
LmnI GCTCC 1 cut(s) 865
LweI GCATC 1 cut(s) 204
MaeI CTAG 4 cut(s) 269, 473, 552, 581
MaeIII GTNAC 2 cut(s) 316, 574
MalI GATC 2 cut(s) 7, 80
MboI GATC 2 cut(s) 5, 78
MboII GAAGA 8 cut(s) 4, 88, 685, 787, 790, 819, 830, 833
MflI RGATCY 1 cut(s) 5
MhlI GDGCHC 1 cut(s) 862
MluCI AATT 6 cut(s) 260, 326, 337, 396, 462, 524
MmeI TCCRAC 1 cut(s) 826
MnlI CCTC 8 cut(s) 297, 448, 583, 663, 664, 780, 924, 927
MseI TTAA 1 cut(s) 50
MslI CAYNNNNRTG 2 cut(s) 278, 512
MspR9I CCNGG 1 cut(s) 148
MvaI CCWGG 1 cut(s) 148
MvnI CGCG 1 cut(s) 248
MwoI GCNNNNNNNGC 3 cut(s) 419, 590, 866
NdeII GATC 2 cut(s) 5, 78
NheI GCTAGC 1 cut(s) 551
NlaIII CATG 3 cut(s) 297, 626, 854
NlaIV GGNNCC 1 cut(s) 380
NmuCI GTSAC 1 cut(s) 574
NspI RCATGY 1 cut(s) 854
OliI CACNNNNGTG 1 cut(s) 512
PauI GCGCGC 1 cut(s) 246
PceI AGGCCT 2 cut(s) 405, 541
PciI ACATGT 1 cut(s) 850
PciSI GCTCTTC 1 cut(s) 802
PfeI GAWTC 2 cut(s) 216, 289
PfoI TCCNGGA 1 cut(s) 146
PscI ACATGT 1 cut(s) 850
PsiI TTATAA 1 cut(s) 417
Psp124BI GAGCTC 1 cut(s) 862
Psp6I CCWGG 1 cut(s) 146
PspGI CCWGG 1 cut(s) 146
PspN4I GGNNCC 1 cut(s) 380
PsuI RGATCY 1 cut(s) 5
PteI GCGCGC 1 cut(s) 246
RsaI GTAC 3 cut(s) 242, 380, 427
RsaNI GTAC 3 cut(s) 241, 379, 426
RseI CAYNNNNRTG 2 cut(s) 278, 512
SacI GAGCTC 1 cut(s) 862
SapI GCTCTTC 1 cut(s) 802
SaqAI TTAA 1 cut(s) 50
Sau3AI GATC 2 cut(s) 5, 78
ScrFI CCNGG 1 cut(s) 148
SduI GDGCHC 1 cut(s) 862
SfaNI GCATC 1 cut(s) 204
SfcI CTRYAG 2 cut(s) 489, 864
SmiMI CAYNNNNRTG 2 cut(s) 278, 512
Sse9I AATT 6 cut(s) 260, 326, 337, 396, 462, 524
SseBI AGGCCT 2 cut(s) 405, 541
SspMI CTAG 4 cut(s) 269, 473, 552, 581
SstI GAGCTC 1 cut(s) 862
StuI AGGCCT 2 cut(s) 405, 541
StyD4I CCNGG 1 cut(s) 146
TaaI ACNGT 3 cut(s) 65, 202, 712
TaqI TCGA 2 cut(s) 99, 785
TasI AATT 6 cut(s) 260, 326, 337, 396, 462, 524
TfiI GAWTC 2 cut(s) 216, 289
Tru1I TTAA 1 cut(s) 50
Tru9I TTAA 1 cut(s) 50
TscAI CASTG 4 cut(s) 70, 165, 672, 692
TseFI GTSAC 1 cut(s) 574
Tsp45I GTSAC 1 cut(s) 574
TspDTI ATGAA 5 cut(s) 27, 161, 254, 537, 831
TspRI CASTG 4 cut(s) 70, 165, 672, 692
XapI RAATTY 2 cut(s) 260, 462
XbaI TCTAGA 1 cut(s) 472
XceI RCATGY 1 cut(s) 854
XspI CTAG 4 cut(s) 269, 473, 552, 581
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.