MD04G1134300.v1.1

Protein of unknown function, DUF604

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Reverse (-)
22106690 .. 22110092
3403 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1134300.v1.1.491

Sequence Viewer

Length: 1488 bp
ATGTCTTGTGCAAGATCAAAAACCCTTCACGATCACCCCTTAAATTTCTGGAAATTCCTAATCAGAGCCATTGATGTCTTATCCCTTGCCATGAAAATAACCCTAGCTCTTTGCTCCGTGGCTTCCATCTCTATCATCCTCTATTTCGCCGTCTCAAACCGCTCCCATAATTTCCCTCCACACACCAACGTAGTCACCAACCTCAATCAAAATTGCATCTCCGCCGACGGTCACGAAAAGACAAACATTTCACACGTTCTGTTTGGCATCGGAGGCTCCGTGAAGACGTGGAACGAACGCCGACACTACACCGAATTGTGGTGGAAGCCTAACGTCACTCGCGGGTTCGTTTGGATGGACCAGATACCAACCCCATTCATGACGTGGGTGGAGACCCTTCCACAGTACAAAGTGTCCGGGGACACGTCACGGTTCAAGTACTCGTGCCCGTATGGTTCACGGTCGGCGGTTCGGTTGGCGAGAATCGTGAAAGAGAGCTTCGAGCTAGGTTTAGAAAATGTGAGGTGGTTTGTTATGGGGGACGATGATACGGTCTATTTCCCCGATAACTTACTTTCAGTGTTAGCAAAATACGATCACAATCAAATGTACTATATTGGCGGGAACTCGGAGAGTGTGGAGCAAGATGAGATCTTCTCATACACTACGGCTTACGGCGGTGGCGGGTTTGCCATTAGTTACCCATTGGCTGCTGAGCTTGTTAAAATTTTGGACGGCTGCATTGATCGGTATGATAAACTCTACGGCGGGGATCAAAAGATCCAGGGTTGCTTGAGCGAGATTGGAGTGCCGCTAACAAAAGAGCTCGGCTTTCACCAACTTGATATATGGGGCAACCCGTATGGTTTGCTATCGGCGCACCCTGTGACCCCGTTGGTGTCACTCCACCATTTTGACTCTGTGGAGTCGATATTTCCAAACCTGAACCAGATTGACTCGGTCAAGAAGTTGGTTAGCGGGTACAAAGTGGATCCGGGCCGGACCGTACAACATAGTTTTTGTTACGACTTGAGGCGTAATTGGTCTGTTTCGGTGTCTTGGGGCTACACGGTGCAGTTGTATCCGTTTTTGGTGACGGCTAAGAAGCTGGAAACGGCGTTGCAGACGTTTTGGACGTGGAAGAATTGGGACGCGCGCTTGTTCACGTTTAATACCCAACCCGTCAGTTCGGACCCGTGTGAGAGATCGGTTGTGTATATGTTAGATGGGGTTGAAAACGTTGGTGGGGGTGAGACCCTGACTACTTACAAGAGGTACGGGGAAAATGATTGCATTCGAAGTGACTACACTCATGCTTTGAAAGTTGAGGTTTTCAATGTCTCGGCTCCCAAATTCAACCCAGACTTGTGGAATAAGGCGCCACGTAGACAATGTTGCGAGATCATCAATGGCACAGAAGGAGCTGACAGAGTTGTACAAGTCCAAATTAGAAGCTGCAATCGCTTTGAGAGTGTGACACCTCCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

496

Amino Acids

56.26

Weight (kDa)

6.7

Isoelectric Point (pI)

35.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fringe PF02434 170 - 280 1.6e-11 Fringe-like
DUF604 PF04646 215 - 466 1.2e-101 Protein of unknown function, DUF604
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1378
AccBSI CCGCTC 1 cut(s) 162
AccI GTMKAC 1 cut(s) 1387
AccII CGCG 3 cut(s) 342, 1154, 1156
AclI AACGTT 1 cut(s) 1239
AclWI GGATC 4 cut(s) 775, 780, 986, 999
AcsI RAATTY 4 cut(s) 43, 53, 726, 1352
AcyI GRCGYC 1 cut(s) 1379
AdeI CACNNNGTG 1 cut(s) 886
AfaI GTAC 7 cut(s) 407, 440, 611, 983, 1008, 1277, 1437
AfiI CCNNNNNNNGG 1 cut(s) 318
AflIII ACRYGT 2 cut(s) 253, 423
AgsI TTSAA 5 cut(s) 436, 1235, 1321, 1336, 1357
AjiI CACGTC 4 cut(s) 288, 384, 426, 1137
AjnI CCWGG 1 cut(s) 783
AluBI AGCT 8 cut(s) 107, 498, 505, 718, 826, 1108, 1424, 1455
AluI AGCT 8 cut(s) 107, 498, 505, 718, 826, 1108, 1424, 1455
Alw21I GWGCWC 1 cut(s) 828
Alw26I GTCTC 4 cut(s) 157, 386, 1247, 1345
AlwI GGATC 4 cut(s) 775, 780, 986, 999
AoxI GGCC 1 cut(s) 997
ApeKI GCWGC 3 cut(s) 710, 738, 1455
ApoI RAATTY 4 cut(s) 43, 53, 726, 1352
AspLEI GCGC 4 cut(s) 880, 1156, 1158, 1381
AspS9I GGNCC 4 cut(s) 358, 997, 1002, 1192
AsuC2I CCSGG 2 cut(s) 418, 996
AsuHPI GGTGA 5 cut(s) 26, 187, 827, 1105, 1262
AsuII TTCGAA 1 cut(s) 1297
AvaII GGWCC 3 cut(s) 358, 1002, 1192
BaeGI GKGCMC 1 cut(s) 449
BamHI GGATCC 1 cut(s) 991
BanI GGYRCC 1 cut(s) 1378
BanII GRGCYC 1 cut(s) 828
BauI CACGAG 1 cut(s) 442
BbsI GAAGAC 1 cut(s) 290
Bbv12I GWGCWC 1 cut(s) 828
BbvI GCAGC 3 cut(s) 697, 725, 1442
BccI CCATC 3 cut(s) 134, 349, 1220
BceAI ACGGC 7 cut(s) 134, 684, 691, 751, 781, 1113, 1131
BciT130I CCWGG 1 cut(s) 785
BciVI GTATCC 1 cut(s) 1092
BcnI CCSGG 2 cut(s) 418, 996
BcoDI GTCTC 4 cut(s) 157, 386, 1247, 1345
BfaI CTAG 2 cut(s) 104, 506
BfoI RGCGCY 1 cut(s) 1382
BfuI GTATCC 1 cut(s) 1092
BglII AGATCT 1 cut(s) 651
BisI GCNGC 4 cut(s) 711, 739, 812, 1456
BlpI GCTNAGC 1 cut(s) 714
BlsI GCNGC 4 cut(s) 712, 740, 813, 1457
BmcAI AGTACT 1 cut(s) 440
Bme1390I CCNGG 3 cut(s) 418, 785, 996
Bme18I GGWCC 3 cut(s) 358, 1002, 1192
BmgBI CACGTC 4 cut(s) 288, 384, 426, 1137
BmgT120I GGNCC 4 cut(s) 358, 997, 1002, 1192
BmiI GGNNCC 5 cut(s) 277, 993, 1194, 1347, 1380
BmrFI CCNGG 3 cut(s) 418, 785, 996
BmsI GCATC 2 cut(s) 225, 276
BpiI GAAGAC 1 cut(s) 290
BplI GAGNNNNNCTC 2 cut(s) 641, 673
Bpu1102I GCTNAGC 1 cut(s) 714
Bpu14I TTCGAA 1 cut(s) 1297
BpuEI CTTGAG 2 cut(s) 814, 1051
BpuMI CCSGG 2 cut(s) 418, 996
BsaAI YACGTR 1 cut(s) 1385
BsaBI GATNNNNATC 1 cut(s) 600
BsaHI GRCGYC 1 cut(s) 1379
BsaI GGTCTC 2 cut(s) 386, 1247
BsaJI CCNNGG 3 cut(s) 117, 417, 784
BsaXI ACNNNNNCTCC 2 cut(s) 264, 294
Bsc4I CCNNNNNNNGG 1 cut(s) 318
Bse8I GATNNNNATC 1 cut(s) 600
BseBI CCWGG 1 cut(s) 785
BseDI CCNNGG 3 cut(s) 117, 417, 784
BseGI GGATG 2 cut(s) 135, 360
BseJI GATNNNNATC 1 cut(s) 600
BseLI CCNNNNNNNGG 1 cut(s) 318
BseMII CTCAG 1 cut(s) 705
BsePI GCGCGC 1 cut(s) 1154
BseSI GKGCMC 1 cut(s) 449
BseXI GCAGC 3 cut(s) 697, 725, 1442
BsgI GTGCAG 1 cut(s) 1094
Bsh1236I CGCG 3 cut(s) 342, 1154, 1156
Bsh1285I CGRYCG 1 cut(s) 464
BshFI GGCC 1 cut(s) 999
BshNI GGYRCC 1 cut(s) 1378
BsiEI CGRYCG 1 cut(s) 464
BsiHKAI GWGCWC 1 cut(s) 828
BsiSI CCGG 3 cut(s) 417, 995, 1000
BslFI GGGAC 3 cut(s) 434, 554, 1163
BslI CCNNNNNNNGG 1 cut(s) 318
BsmAI GTCTC 4 cut(s) 157, 386, 1247, 1345
BsmBI CGTCTC 1 cut(s) 157
BsmFI GGGAC 3 cut(s) 434, 554, 1163
BsmI GAATGC 1 cut(s) 1293
BsnI GGCC 1 cut(s) 999
Bso31I GGTCTC 2 cut(s) 386, 1247
Bsp119I TTCGAA 1 cut(s) 1297
Bsp1286I GDGCHC 2 cut(s) 449, 828
Bsp1407I TGTACA 1 cut(s) 1435
Bsp1720I GCTNAGC 1 cut(s) 714
BspANI GGCC 1 cut(s) 999
BspCNI CTCAG 1 cut(s) 706
BspFNI CGCG 3 cut(s) 342, 1154, 1156
BspHI TCATGA 1 cut(s) 378
BspLI GGNNCC 5 cut(s) 277, 993, 1194, 1347, 1380
BspPI GGATC 4 cut(s) 775, 780, 986, 999
BspT104I TTCGAA 1 cut(s) 1297
BspT107I GGYRCC 1 cut(s) 1378
BspTNI GGTCTC 2 cut(s) 386, 1247
BsrBI CCGCTC 1 cut(s) 162
BsrGI TGTACA 1 cut(s) 1435
BssECI CCNNGG 3 cut(s) 117, 417, 784
BssHII GCGCGC 1 cut(s) 1154
BssNI GRCGYC 1 cut(s) 1379
BssSI CACGAG 1 cut(s) 442
Bst2BI CACGAG 1 cut(s) 442
Bst2UI CCWGG 1 cut(s) 785
Bst4CI ACNGT 7 cut(s) 230, 405, 432, 462, 553, 1006, 1072
BstACI GRCGYC 1 cut(s) 1379
BstAUI TGTACA 1 cut(s) 1435
BstBAI YACGTR 1 cut(s) 1385
BstBI TTCGAA 1 cut(s) 1297
BstC8I GCNNGC 1 cut(s) 1156
BstDEI CTNAG 2 cut(s) 714, 1101
BstDSI CCRYGG 1 cut(s) 117
BstF5I GGATG 2 cut(s) 135, 360
BstFNI CGCG 3 cut(s) 342, 1154, 1156
BstH2I RGCGCY 1 cut(s) 1382
BstHHI GCGC 4 cut(s) 880, 1156, 1158, 1381
BstMAI GTCTC 4 cut(s) 157, 386, 1247, 1345
BstMCI CGRYCG 1 cut(s) 464
BstMWI GCNNNNNNNGC 3 cut(s) 273, 877, 1461
BstNI CCWGG 1 cut(s) 785
BstSCI CCNGG 3 cut(s) 416, 783, 994
BstSLI GKGCMC 1 cut(s) 449
BstUI CGCG 3 cut(s) 342, 1154, 1156
BstV1I GCAGC 3 cut(s) 697, 725, 1442
BstV2I GAAGAC 1 cut(s) 290
BstX2I RGATCY 3 cut(s) 651, 780, 991
BstXI CCANNNNNNTGG 1 cut(s) 1368
BstYI RGATCY 3 cut(s) 651, 780, 991
BsuI GTATCC 1 cut(s) 1092
BsuRI GGCC 1 cut(s) 999
BtgI CCRYGG 1 cut(s) 117
BtrI CACGTC 4 cut(s) 288, 384, 426, 1137
BtsCI GGATG 2 cut(s) 135, 360
BtsIMutI CAGTG 1 cut(s) 585
Cac8I GCNNGC 1 cut(s) 1156
CciI TCATGA 1 cut(s) 378
CfoI GCGC 4 cut(s) 880, 1156, 1158, 1381
Cfr13I GGNCC 4 cut(s) 358, 997, 1002, 1192
CpoI CGGWCCG 1 cut(s) 1002
CseI GACGC 1 cut(s) 1160
Csp6I GTAC 7 cut(s) 406, 439, 610, 982, 1007, 1276, 1436
CspI CGGWCCG 1 cut(s) 1002
CviAII CATG 3 cut(s) 91, 379, 1313
CviQI GTAC 7 cut(s) 406, 439, 610, 982, 1007, 1276, 1436
DdeI CTNAG 2 cut(s) 714, 1101
DinI GGCGCC 1 cut(s) 1380
DraIII CACNNNGTG 1 cut(s) 886
EciI GGCGGA 1 cut(s) 211
Ecl136II GAGCTC 1 cut(s) 826
Eco24I GRGCYC 1 cut(s) 828
Eco31I GGTCTC 2 cut(s) 386, 1247
Eco47I GGWCC 3 cut(s) 358, 1002, 1192
Eco53kI GAGCTC 1 cut(s) 826
EcoICRI GAGCTC 1 cut(s) 826
EcoRII CCWGG 1 cut(s) 783
EcoT38I GRGCYC 1 cut(s) 828
EgeI GGCGCC 1 cut(s) 1380
EheI GGCGCC 1 cut(s) 1380
Esp3I CGTCTC 1 cut(s) 157
FaeI CATG 3 cut(s) 94, 382, 1316
FaqI GGGAC 3 cut(s) 434, 554, 1163
FatI CATG 3 cut(s) 90, 378, 1312
FauI CCCGC 5 cut(s) 335, 614, 677, 761, 971
FblI GTMKAC 1 cut(s) 1387
Fnu4HI GCNGC 4 cut(s) 711, 739, 812, 1456
FokI GGATG 2 cut(s) 122, 367
FriOI GRGCYC 1 cut(s) 828
Fsp4HI GCNGC 4 cut(s) 711, 739, 812, 1456
FspBI CTAG 2 cut(s) 104, 506
GlaI GCGC 4 cut(s) 879, 1155, 1157, 1380
GluI GCNGC 4 cut(s) 711, 739, 812, 1456
HaeII RGCGCY 1 cut(s) 1382
HaeIII GGCC 1 cut(s) 999
HapII CCGG 3 cut(s) 417, 995, 1000
HgaI GACGC 1 cut(s) 1160
HhaI GCGC 4 cut(s) 880, 1156, 1158, 1381
Hin1I GRCGYC 1 cut(s) 1379
Hin1II CATG 3 cut(s) 94, 382, 1316
Hin6I GCGC 4 cut(s) 878, 1154, 1156, 1379
HinP1I GCGC 4 cut(s) 878, 1154, 1156, 1379
HinfI GANTC 4 cut(s) 483, 917, 926, 956
HpaII CCGG 3 cut(s) 417, 995, 1000
HphI GGTGA 5 cut(s) 26, 187, 827, 1105, 1262
Hpy166II GTNNAC 3 cut(s) 458, 1164, 1388
Hpy188I TCNGA 4 cut(s) 65, 272, 631, 1192
Hpy188III TCNNGA 6 cut(s) 29, 49, 233, 379, 487, 964
Hpy8I GTNNAC 3 cut(s) 458, 1164, 1388
Hpy99I CGWCG 1 cut(s) 230
HpyAV CCTTC 3 cut(s) 35, 407, 1412
HpyCH4III ACNGT 7 cut(s) 230, 405, 432, 462, 553, 1006, 1072
HpyCH4V TGCA 7 cut(s) 11, 216, 741, 1075, 1123, 1293, 1458
HpyF10VI GCNNNNNNNGC 3 cut(s) 273, 877, 1461
HpyF3I CTNAG 2 cut(s) 714, 1101
Hsp92I GRCGYC 1 cut(s) 1379
Hsp92II CATG 3 cut(s) 94, 382, 1316
HspAI GCGC 4 cut(s) 878, 1154, 1156, 1379
KasI GGCGCC 1 cut(s) 1378
LmnI GCTCC 6 cut(s) 119, 167, 281, 640, 1351, 1421
Lsp1109I GCAGC 3 cut(s) 697, 725, 1442
LweI GCATC 2 cut(s) 225, 276
MaeI CTAG 2 cut(s) 104, 506
MbiI CCGCTC 1 cut(s) 162
MboII GAAGA 3 cut(s) 295, 646, 1153
MflI RGATCY 3 cut(s) 651, 780, 991
MhlI GDGCHC 2 cut(s) 449, 828
Mly113I GGCGCC 1 cut(s) 1379
MlyI GAGTC 3 cut(s) 911, 935, 950
MnlI CCTC 8 cut(s) 149, 186, 212, 266, 516, 1026, 1266, 1321
MseI TTAA 3 cut(s) 41, 723, 1170
MspI CCGG 3 cut(s) 417, 995, 1000
MspR9I CCNGG 3 cut(s) 418, 785, 996
Mva1269I GAATGC 1 cut(s) 1293
MvaI CCWGG 1 cut(s) 785
MvnI CGCG 3 cut(s) 342, 1154, 1156
MwoI GCNNNNNNNGC 3 cut(s) 273, 877, 1461
NarI GGCGCC 1 cut(s) 1379
NciI CCSGG 2 cut(s) 418, 996
NlaIII CATG 3 cut(s) 94, 382, 1316
NlaIV GGNNCC 5 cut(s) 277, 993, 1194, 1347, 1380
NmeAIII GCCGAG 2 cut(s) 807, 1322
NmuCI GTSAC 9 cut(s) 193, 230, 334, 426, 886, 900, 1093, 1301, 1474
NspV TTCGAA 1 cut(s) 1297
PagI TCATGA 1 cut(s) 378
PauI GCGCGC 1 cut(s) 1154
PcsI WCGNNNNNNNCGW 2 cut(s) 276, 1133
PctI GAATGC 1 cut(s) 1293
PfeI GAWTC 1 cut(s) 483
PflFI GACNNNGTC 1 cut(s) 959
PkrI GCNGC 4 cut(s) 712, 740, 813, 1457
PleI GAGTC 3 cut(s) 911, 934, 950
PluTI GGCGCC 1 cut(s) 1382
PpsI GAGTC 3 cut(s) 911, 934, 950
Ppu21I YACGTR 1 cut(s) 1385
Psp124BI GAGCTC 1 cut(s) 828
Psp1406I AACGTT 1 cut(s) 1239
Psp6I CCWGG 1 cut(s) 783
PspGI CCWGG 1 cut(s) 783
PspN4I GGNNCC 5 cut(s) 277, 993, 1194, 1347, 1380
PspPI GGNCC 4 cut(s) 358, 997, 1002, 1192
PsuI RGATCY 3 cut(s) 651, 780, 991
PsyI GACNNNGTC 1 cut(s) 959
PteI GCGCGC 1 cut(s) 1154
RsaI GTAC 7 cut(s) 407, 440, 611, 983, 1008, 1277, 1437
RsaNI GTAC 7 cut(s) 406, 439, 610, 982, 1007, 1276, 1436
Rsr2I CGGWCCG 1 cut(s) 1002
RsrII CGGWCCG 1 cut(s) 1002
SacI GAGCTC 1 cut(s) 828
SaqAI TTAA 3 cut(s) 41, 723, 1170
SatI GCNGC 4 cut(s) 711, 739, 812, 1456
Sau96I GGNCC 4 cut(s) 358, 997, 1002, 1192
ScaI AGTACT 1 cut(s) 440
SchI GAGTC 3 cut(s) 911, 935, 950
ScrFI CCNGG 3 cut(s) 418, 785, 996
SduI GDGCHC 2 cut(s) 449, 828
SfaNI GCATC 2 cut(s) 225, 276
SfoI GGCGCC 1 cut(s) 1380
SfuI TTCGAA 1 cut(s) 1297
SinI GGWCC 3 cut(s) 358, 1002, 1192
SmlI CTYRAG 2 cut(s) 793, 1030
SmoI CTYRAG 2 cut(s) 793, 1030
SspDI GGCGCC 1 cut(s) 1378
SspMI CTAG 2 cut(s) 104, 506
SstI GAGCTC 1 cut(s) 828
StyD4I CCNGG 3 cut(s) 416, 783, 994
TaaI ACNGT 7 cut(s) 230, 405, 432, 462, 553, 1006, 1072
TaqI TCGA 3 cut(s) 501, 929, 1297
TaqII GACCGA 1 cut(s) 949
TatI WGTACW 4 cut(s) 405, 438, 609, 1435
TauI GCSGC 1 cut(s) 814
TfiI GAWTC 1 cut(s) 483
Tru1I TTAA 3 cut(s) 41, 723, 1170
Tru9I TTAA 3 cut(s) 41, 723, 1170
TscAI CASTG 1 cut(s) 585
TseFI GTSAC 9 cut(s) 193, 230, 334, 426, 886, 900, 1093, 1301, 1474
TseI GCWGC 3 cut(s) 710, 738, 1455
Tsp45I GTSAC 9 cut(s) 193, 230, 334, 426, 886, 900, 1093, 1301, 1474
TspDTI ATGAA 2 cut(s) 107, 367
TspGWI ACGGA 4 cut(s) 106, 268, 1074, 1473
TspRI CASTG 1 cut(s) 585
Tth111I GACNNNGTC 1 cut(s) 959
VpaK11BI GGWCC 3 cut(s) 358, 1002, 1192
XapI RAATTY 4 cut(s) 43, 53, 726, 1352
XcmI CCANNNNNNNNNTGG 1 cut(s) 381
XmiI GTMKAC 1 cut(s) 1387
XspI CTAG 2 cut(s) 104, 506
ZrmI AGTACT 1 cut(s) 440
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.