Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0006722

Physical Location & Seq

Genomic Coordinates Reverse (-)

25098491 .. 25099625

Gene Structure 1135 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G260300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGTACTATATTGGCGGGAACTCGGAGAGCGTGGAACAAGATGTGATACACTCGTACACTATGGCCTACGGCGGAGGCGGGTTTGCTATTAGTTATCCATTGGCTGCTGAGCTTGTTAAGATCTTAGATGGGTGCATCGATCGGTATGATAAATTCTACGGCTCAGATCAAAAAATTCAGGGTTGTTTGAGTGAGATCGGAGTGCCCGTAACAAAAGAACTCGGGTTCCACCAGCTCGATATACGTGGAAGCCCGTATGGTTTGCTAGCGGCGCACCCGCTGGCCCCACTAGTGTCACTCCACCATTTTGACTATTTCGAGTCAATATTTCCAAACCTAACTCAGATTGACTCGGTGGAAAAGTTGGTCAGCGGGTATGAAGTGGATCCAAGTCGGATCCTGCAGCAAAGTTTTTGTTATGACTTGAATCGTAATTGGTCTGTTTCGGTGTCTTGGGGTTACACTGTGCAGTTTTATCCGTTTCTGGTGACTGCTAAGAAGTTAGAAACGGCAGTAGGGACGTTTCAGACATGGAGGAGTTGGGACACTGGTCCGTTCACATTTAATACTCAACCCATCAGTTCAGACATGTGTGAGAGACCCGTTGTTTTTATGTTGGATCGGGTTGAGAGTGTTGGTGGGGGTAAGACCTTGACCGGTTACAAGAGGTACAATATGGGAAAAGAGGAAACAGATTGTCCTAGATGTAACTACACTGCCGTGGCAGTTCAATTTTTCAACGTCTCAGCTCCCATATTCAACCCTGACTTGTGGAATAAGGCACCACGTAGACAATGCTGCGAGATCATCAATGGTACAGATGGAGCTGACAACGTTGTTCATGTCCAAATTAGAGGCTGCAAGCGCTTTGAGAGTGTCACTCCTCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF604

Protein Analysis

297

Amino Acids

33.26

Weight (kDa)

5.4

Isoelectric Point (pI)

38.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006722)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37730
fragaria_vesca	FvH4_6g13140
malus_domestica	MD04G1134300.v1.1 MD04G1134500.v1.1 MD12G1148000.v1.1
prunus_persica	Prupe.6G260300_v2.0.a1 Prupe.6G260400_v2.0.a1
pyrus_communis	pycom04g12190 pycom04g12200
rosa_chinensis	RchiOBHm_Chr3g0465521 RchiOBHm_Chr3g0465641
rosa_laevigata	RLG00000024632 RLG00000024636
rosa_multiflora	Rmu_co8472167.1_g000001 Rmu_sc0000550.1_g000021
rosa_roxburghii	Rroxscaffold_6G00414960 Rroxscaffold_6G00414990
rosa_rugosa	Rorug03G0077200 Rorug03G0077700
rosa_samantha	Rh3BG143400 Rh3CG144400 Rh3DG143700 Rh3DG144700
rosa_wichuraiana	Rw3G011610 Rw3G011640 Rw3G011680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	781
AccI	GTMKAC	1 cut(s)	790
AciI	CCGC	6 cut(s)	15, 72, 78, 269, 278, 372
AclI	AACGTT	1 cut(s)	834
AclWI	GGATC	5 cut(s)	380, 391, 393, 404, 627
AcsI	RAATTY	2 cut(s)	152, 174
AfaI	GTAC	4 cut(s)	5, 56, 671, 817
AfeI	AGCGCT	1 cut(s)	866
AflIII	ACRYGT	1 cut(s)	588
AgeI	ACCGGT	1 cut(s)	656
AgsI	TTSAA	4 cut(s)	427, 731, 739, 760
AhlI	ACTAGT	1 cut(s)	289
AleI	CACNNNNGTG	1 cut(s)	719
AloI	GAACNNNNNNTCC	2 cut(s)	210, 242
AluBI	AGCT	4 cut(s)	112, 235, 749, 827
AluI	AGCT	4 cut(s)	112, 235, 749, 827
Alw26I	GTCTC	2 cut(s)	592, 748
AlwI	GGATC	5 cut(s)	380, 391, 393, 404, 627
Ama87I	CYCGRG	1 cut(s)	221
Aor51HI	AGCGCT	1 cut(s)	866
AoxI	GGCC	2 cut(s)	63, 282
ApeKI	GCWGC	4 cut(s)	104, 403, 798, 858
ApoI	RAATTY	2 cut(s)	152, 174
AsiGI	ACCGGT	1 cut(s)	656
AspLEI	GCGC	2 cut(s)	274, 867
AspS9I	GGNCC	2 cut(s)	283, 551
AsuHPI	GGTGA	1 cut(s)	499
AsuNHI	GCTAGC	1 cut(s)	265
AvaI	CYCGRG	1 cut(s)	221
AvaII	GGWCC	1 cut(s)	551
BaeGI	GKGCMC	1 cut(s)	207
BaeI	ACNNNNGTAYC	2 cut(s)	38, 71
BamHI	GGATCC	2 cut(s)	385, 396
BanI	GGYRCC	1 cut(s)	781
BbvI	GCAGC	4 cut(s)	91, 415, 785, 845
BccI	CCATC	3 cut(s)	122, 584, 815
BceAI	ACGGC	4 cut(s)	85, 175, 525, 704
BcoDI	GTCTC	2 cut(s)	592, 748
BcuI	ACTAGT	1 cut(s)	289
BfaI	CTAG	3 cut(s)	266, 290, 702
BfmI	CTRYAG	1 cut(s)	401
BfoI	RGCGCY	1 cut(s)	868
BglII	AGATCT	1 cut(s)	120
BisI	GCNGC	5 cut(s)	105, 270, 404, 799, 859
BlpI	GCTNAGC	1 cut(s)	108
BlsI	GCNGC	5 cut(s)	106, 271, 405, 800, 860
Bme18I	GGWCC	1 cut(s)	551
BmeT110I	CYCGRG	1 cut(s)	221
BmgT120I	GGNCC	2 cut(s)	283, 551
BmiI	GGNNCC	5 cut(s)	227, 285, 387, 398, 783
BmsI	GCATC	1 cut(s)	144
BmtI	GCTAGC	1 cut(s)	269
BoxI	GACNNNNGTC	1 cut(s)	549
BplI	GAGNNNNNCTC	1 cut(s)	865
Bpu1102I	GCTNAGC	1 cut(s)	108
Bsa29I	ATCGAT	1 cut(s)	138
BsaAI	YACGTR	2 cut(s)	245, 788
BsaI	GGTCTC	1 cut(s)	592
BsaJI	CCNNGG	1 cut(s)	720
BsaWI	WCCGGW	1 cut(s)	656
BsaXI	ACNNNNNCTCC	2 cut(s)	192, 222
Bse118I	RCCGGY	1 cut(s)	656
Bse1I	ACTGG	1 cut(s)	553
BseCI	ATCGAT	1 cut(s)	138
BseDI	CCNNGG	1 cut(s)	720
BseMII	CTCAG	4 cut(s)	99, 177, 356, 759
BseNI	ACTGG	1 cut(s)	553
BseRI	GAGGAG	2 cut(s)	550, 873
BseSI	GKGCMC	1 cut(s)	207
BseXI	GCAGC	4 cut(s)	91, 415, 785, 845
BsgI	GTGCAG	1 cut(s)	488
Bsh1285I	CGRYCG	1 cut(s)	142
BshFI	GGCC	2 cut(s)	65, 284
BshNI	GGYRCC	1 cut(s)	781
BshTI	ACCGGT	1 cut(s)	656
BshVI	ATCGAT	1 cut(s)	138
BsiEI	CGRYCG	1 cut(s)	142
BsiHKCI	CYCGRG	1 cut(s)	221
BsiSI	CCGG	1 cut(s)	657
BslFI	GGGAC	2 cut(s)	532, 557
BsmAI	GTCTC	2 cut(s)	592, 748
BsmBI	CGTCTC	1 cut(s)	748
BsmFI	GGGAC	2 cut(s)	532, 557
BsnI	GGCC	2 cut(s)	65, 284
Bso31I	GGTCTC	1 cut(s)	592
BsoBI	CYCGRG	1 cut(s)	221
Bsp1286I	GDGCHC	1 cut(s)	207
Bsp143I	GATC	8 cut(s)	120, 139, 166, 195, 385, 396, 619, 804
Bsp1720I	GCTNAGC	1 cut(s)	108
BspACI	CCGC	6 cut(s)	15, 72, 78, 269, 278, 372
BspANI	GGCC	2 cut(s)	65, 284
BspCNI	CTCAG	4 cut(s)	100, 176, 355, 758
BspDI	ATCGAT	1 cut(s)	138
BspLI	GGNNCC	5 cut(s)	227, 285, 387, 398, 783
BspMAI	CTGCAG	1 cut(s)	405
BspOI	GCTAGC	1 cut(s)	269
BspPI	GGATC	5 cut(s)	380, 391, 393, 404, 627
BspT107I	GGYRCC	1 cut(s)	781
BspTNI	GGTCTC	1 cut(s)	592
BsrFI	RCCGGY	1 cut(s)	656
BsrI	ACTGG	1 cut(s)	553
BssAI	RCCGGY	1 cut(s)	656
BssECI	CCNNGG	1 cut(s)	720
BssMI	GATC	8 cut(s)	120, 139, 166, 195, 385, 396, 619, 804
Bst4CI	ACNGT	1 cut(s)	466
BstBAI	YACGTR	2 cut(s)	245, 788
BstC8I	GCNNGC	3 cut(s)	267, 282, 863
BstDEI	CTNAG	7 cut(s)	108, 124, 163, 342, 495, 745, 885
BstDSI	CCRYGG	1 cut(s)	720
BstH2I	RGCGCY	1 cut(s)	868
BstHHI	GCGC	2 cut(s)	274, 867
BstKTI	GATC	8 cut(s)	123, 142, 169, 198, 388, 399, 622, 807
BstMAI	GTCTC	2 cut(s)	592, 748
BstMBI	GATC	8 cut(s)	120, 139, 166, 195, 385, 396, 619, 804
BstMCI	CGRYCG	1 cut(s)	142
BstMWI	GCNNNNNNNGC	2 cut(s)	271, 864
BstNSI	RCATGY	1 cut(s)	592
BstPAI	GACNNNNGTC	1 cut(s)	549
BstSFI	CTRYAG	1 cut(s)	401
BstSLI	GKGCMC	1 cut(s)	207
BstV1I	GCAGC	4 cut(s)	91, 415, 785, 845
BstX2I	RGATCY	3 cut(s)	120, 385, 396
BstYI	RGATCY	3 cut(s)	120, 385, 396
Bsu15I	ATCGAT	1 cut(s)	138
BsuRI	GGCC	2 cut(s)	65, 284
BsuTUI	ATCGAT	1 cut(s)	138
BtgI	CCRYGG	1 cut(s)	720
BtsI	GCAGTG	1 cut(s)	714
BtsIMutI	CAGTG	3 cut(s)	462, 546, 714
Cac8I	GCNNGC	3 cut(s)	267, 282, 863
CfoI	GCGC	2 cut(s)	274, 867
Cfr10I	RCCGGY	1 cut(s)	656
Cfr13I	GGNCC	2 cut(s)	283, 551
ClaI	ATCGAT	1 cut(s)	138
Csp6I	GTAC	4 cut(s)	4, 55, 670, 816
CspAI	ACCGGT	1 cut(s)	656
CviAII	CATG	3 cut(s)	531, 589, 842
CviQI	GTAC	4 cut(s)	4, 55, 670, 816
DdeI	CTNAG	7 cut(s)	108, 124, 163, 342, 495, 745, 885
DpnI	GATC	8 cut(s)	122, 141, 168, 197, 387, 398, 621, 806
DpnII	GATC	8 cut(s)	120, 139, 166, 195, 385, 396, 619, 804
EciI	GGCGGA	1 cut(s)	87
Eco31I	GGTCTC	1 cut(s)	592
Eco47I	GGWCC	1 cut(s)	551
Eco47III	AGCGCT	1 cut(s)	866
Eco88I	CYCGRG	1 cut(s)	221
Esp3I	CGTCTC	1 cut(s)	748
FaeI	CATG	3 cut(s)	534, 592, 845
FaqI	GGGAC	2 cut(s)	532, 557
FatI	CATG	3 cut(s)	530, 588, 841
FauI	CCCGC	4 cut(s)	8, 71, 285, 365
FblI	GTMKAC	1 cut(s)	790
Fnu4HI	GCNGC	5 cut(s)	105, 270, 404, 799, 859
Fsp4HI	GCNGC	5 cut(s)	105, 270, 404, 799, 859
FspBI	CTAG	3 cut(s)	266, 290, 702
GlaI	GCGC	2 cut(s)	273, 866
GluI	GCNGC	5 cut(s)	105, 270, 404, 799, 859
HaeII	RGCGCY	1 cut(s)	868
HaeIII	GGCC	2 cut(s)	65, 284
HapII	CCGG	1 cut(s)	657
HhaI	GCGC	2 cut(s)	274, 867
Hin1II	CATG	3 cut(s)	534, 592, 845
Hin6I	GCGC	2 cut(s)	272, 865
HinP1I	GCGC	2 cut(s)	272, 865
HinfI	GANTC	3 cut(s)	320, 350, 427
HpaII	CCGG	1 cut(s)	657
HphI	GGTGA	1 cut(s)	499
Hpy166II	GTNNAC	3 cut(s)	57, 558, 791
Hpy188I	TCNGA	7 cut(s)	25, 166, 200, 345, 396, 528, 586
Hpy8I	GTNNAC	3 cut(s)	57, 558, 791
HpyCH4III	ACNGT	1 cut(s)	466
HpyCH4IV	ACGT	5 cut(s)	244, 521, 741, 787, 834
HpyCH4V	TGCA	4 cut(s)	135, 403, 469, 861
HpyF10VI	GCNNNNNNNGC	2 cut(s)	271, 864
HpyF3I	CTNAG	7 cut(s)	108, 124, 163, 342, 495, 745, 885
HpySE526I	ACGT	5 cut(s)	244, 521, 741, 787, 834
Hsp92II	CATG	3 cut(s)	534, 592, 845
HspAI	GCGC	2 cut(s)	272, 865
Kzo9I	GATC	8 cut(s)	120, 139, 166, 195, 385, 396, 619, 804
LmnI	GCTCC	2 cut(s)	754, 824
LpnPI	CCDG	8 cut(s)	164, 245, 266, 413, 470, 534, 670, 777
Lsp1109I	GCAGC	4 cut(s)	91, 415, 785, 845
LweI	GCATC	1 cut(s)	144
MaeI	CTAG	3 cut(s)	266, 290, 702
MaeII	ACGT	5 cut(s)	244, 521, 741, 787, 834
MaeIII	GTNAC	7 cut(s)	208, 294, 458, 487, 659, 707, 877
MalI	GATC	8 cut(s)	122, 141, 168, 197, 387, 398, 621, 806
MboI	GATC	8 cut(s)	120, 139, 166, 195, 385, 396, 619, 804
MflI	RGATCY	3 cut(s)	120, 385, 396
MhlI	GDGCHC	1 cut(s)	207
MluCI	AATT	5 cut(s)	152, 174, 433, 731, 849
MlyI	GAGTC	2 cut(s)	329, 344
MmeI	TCCRAC	2 cut(s)	374, 597
MnlI	CCTC	5 cut(s)	68, 528, 660, 679, 848
MseI	TTAA	2 cut(s)	117, 564
MslI	CAYNNNNRTG	1 cut(s)	719
MspA1I	CMGCKG	2 cut(s)	280, 372
MspI	CCGG	1 cut(s)	657
MwoI	GCNNNNNNNGC	2 cut(s)	271, 864
NdeII	GATC	8 cut(s)	120, 139, 166, 195, 385, 396, 619, 804
NheI	GCTAGC	1 cut(s)	265
NlaIII	CATG	3 cut(s)	534, 592, 845
NlaIV	GGNNCC	5 cut(s)	227, 285, 387, 398, 783
NmuCI	GTSAC	3 cut(s)	294, 487, 877
NspI	RCATGY	1 cut(s)	592
OliI	CACNNNNGTG	1 cut(s)	719
PciI	ACATGT	1 cut(s)	588
PcsI	WCGNNNNNNNCGW	1 cut(s)	204
PfeI	GAWTC	1 cut(s)	427
PinAI	ACCGGT	1 cut(s)	656
PkrI	GCNGC	5 cut(s)	106, 271, 405, 800, 860
Ple19I	CGATCG	1 cut(s)	142
PleI	GAGTC	2 cut(s)	328, 344
PpsI	GAGTC	2 cut(s)	328, 344
Ppu21I	YACGTR	2 cut(s)	245, 788
PscI	ACATGT	1 cut(s)	588
PshAI	GACNNNNGTC	1 cut(s)	549
Psp1406I	AACGTT	1 cut(s)	834
PspN4I	GGNNCC	5 cut(s)	227, 285, 387, 398, 783
PspPI	GGNCC	2 cut(s)	283, 551
PstI	CTGCAG	1 cut(s)	405
PsuI	RGATCY	3 cut(s)	120, 385, 396
PvuI	CGATCG	1 cut(s)	142
RsaI	GTAC	4 cut(s)	5, 56, 671, 817
RsaNI	GTAC	4 cut(s)	4, 55, 670, 816
RseI	CAYNNNNRTG	1 cut(s)	719
SaqAI	TTAA	2 cut(s)	117, 564
SatI	GCNGC	5 cut(s)	105, 270, 404, 799, 859
Sau3AI	GATC	8 cut(s)	120, 139, 166, 195, 385, 396, 619, 804
Sau96I	GGNCC	2 cut(s)	283, 551
SchI	GAGTC	2 cut(s)	329, 344
SduI	GDGCHC	1 cut(s)	207
SfaNI	GCATC	1 cut(s)	144
SfcI	CTRYAG	1 cut(s)	401
SinI	GGWCC	1 cut(s)	551
SmiMI	CAYNNNNRTG	1 cut(s)	719
SpeI	ACTAGT	1 cut(s)	289
Sse9I	AATT	5 cut(s)	152, 174, 433, 731, 849
SsiI	CCGC	6 cut(s)	15, 72, 78, 269, 278, 372
SspI	AATATT	1 cut(s)	327
SspMI	CTAG	3 cut(s)	266, 290, 702
TaaI	ACNGT	1 cut(s)	466
TaiI	ACGT	5 cut(s)	247, 524, 744, 790, 837
TaqI	TCGA	3 cut(s)	138, 237, 318
TasI	AATT	5 cut(s)	152, 174, 433, 731, 849
TatI	WGTACW	1 cut(s)	3
TauI	GCSGC	1 cut(s)	272
TfiI	GAWTC	1 cut(s)	427
Tru1I	TTAA	2 cut(s)	117, 564
Tru9I	TTAA	2 cut(s)	117, 564
TscAI	CASTG	3 cut(s)	469, 553, 721
TseFI	GTSAC	3 cut(s)	294, 487, 877
TseI	GCWGC	4 cut(s)	104, 403, 798, 858
Tsp45I	GTSAC	3 cut(s)	294, 487, 877
TspDTI	ATGAA	2 cut(s)	393, 830
TspGWI	ACGGA	2 cut(s)	468, 543
TspRI	CASTG	3 cut(s)	469, 553, 721
VpaK11BI	GGWCC	1 cut(s)	551
XapI	RAATTY	2 cut(s)	152, 174
XceI	RCATGY	1 cut(s)	592
XmiI	GTMKAC	1 cut(s)	790
XspI	CTAG	3 cut(s)	266, 290, 702

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.