Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0006722

Physical Location & Seq

Genomic Coordinates Forward (+)

11456235 .. 11457263

Gene Structure 1029 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G011680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGCCTAATGTCACCCACGGGTTTATCTGGCTGGACCAGAAACCCTCGCCCAACATAACATGGCCAGAGACCTCGCCAGAGTACAAAGTCTCAGCGGACACATCACGGTTCAAGTACTCCTGCTGGTACAGTTCCCGCTCCGCCATTCGAATTGCAAGAATTGTAAAAGAGAATTTCAAGTTGGGCTTGGAGAATGAAAGGTGGTTTGTCATGGGAGACGATGAGACGGTGTTTTTCACTGACAACTTAGTTACAGTGTTAGCGAAATACGATCACAATCAGATGTATTACATTGGCGGGAATTCAGAGAGTGTGGAGCAAGATGTGATACACTCATACACTGTGGCCTATGGCGGTGGTGGTTTTGCTATAAGCTACCCATTGGCAGCTGAGCTGGTTAGGGTTTTGGATGGGTGCATTGATAGGTATGATGCGTTTTATGGCTCAGATCAAAAGGTCCGGGTCCGTTTGAGCGAGATTGGGGTGCCCTTCACAAAAGAGCTAGGATTTCACCAGGTTGACATACGAAGGAGTCCTTACGGTTTGCTAGTGGCGCACCCGGTGGCACCACTAGTGTCACTGCACCACTTGGATTACGTGGAGCCCATGTTTCCTGGCCTAACCCCGATTGACTCAGTTAAGAAGTTGTTGTACCTGTCGTTGGTGACGGAAAAGAACCGAGAAACTGCCTTGGAGACGTTTCAGACATGGAGGAGTTGGGAAATGGGTCCGTACACGTTCAATACCCGATCCGTGAGCCCATATCCATGTAAGAGACCGCTTGTGTATTTCTTGGATCGGGTTGAGAGTGTTGGTGGGGATGAGACTTTGACTATGTACAAGAGGTACGCGGAGAAAGAAGAAAAAGAATGTCTCCAACGTGACTACATTGCTGCTTCGGAAGTTCAGTTCTTCACAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF604

Protein Analysis

307

Amino Acids

35.4

Weight (kDa)

5.49

Isoelectric Point (pI)

49.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fringe	PF02434	46 - 144	5.5e-10	Fringe-like
DUF604	PF04646	107 - 217	8.4e-52	Protein of unknown function, DUF604
DUF604	PF04646	220 - 303	2.7e-16	Protein of unknown function, DUF604

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006722)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37730
fragaria_vesca	FvH4_6g13140
malus_domestica	MD04G1134300.v1.1 MD04G1134500.v1.1 MD12G1148000.v1.1
prunus_persica	Prupe.6G260300_v2.0.a1 Prupe.6G260400_v2.0.a1
pyrus_communis	pycom04g12190 pycom04g12200
rosa_chinensis	RchiOBHm_Chr3g0465521 RchiOBHm_Chr3g0465641
rosa_laevigata	RLG00000024632 RLG00000024636
rosa_multiflora	Rmu_co8472167.1_g000001 Rmu_sc0000550.1_g000021
rosa_roxburghii	Rroxscaffold_6G00414960 Rroxscaffold_6G00414990
rosa_rugosa	Rorug03G0077200 Rorug03G0077700
rosa_samantha	Rh3BG143400 Rh3CG144400 Rh3DG143700 Rh3DG144700
rosa_wichuraiana	Rw3G011610 Rw3G011640 Rw3G011680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	484, 565
AccBSI	CCGCTC	1 cut(s)	138
AccII	CGCG	1 cut(s)	851
AciI	CCGC	7 cut(s)	95, 136, 141, 297, 354, 779, 851
AclWI	GGATC	2 cut(s)	744, 804
AcoI	YGGCCR	1 cut(s)	62
AcsI	RAATTY	2 cut(s)	172, 301
AdeI	CACNNNGTG	1 cut(s)	562
AfaI	GTAC	7 cut(s)	83, 116, 128, 653, 734, 839, 848
AfiI	CCNNNNNNNGG	1 cut(s)	661
AflIII	ACRYGT	1 cut(s)	735
AgsI	TTSAA	3 cut(s)	112, 178, 742
AhlI	ACTAGT	1 cut(s)	571
AjnI	CCWGG	2 cut(s)	513, 613
AjuI	GAANNNNNNNTTGG	2 cut(s)	164, 196
AloI	GAACNNNNNNTCC	1 cut(s)	893
AluBI	AGCT	4 cut(s)	375, 389, 394, 502
AluI	AGCT	4 cut(s)	375, 389, 394, 502
Alw26I	GTCTC	8 cut(s)	62, 94, 210, 218, 689, 769, 818, 878
AlwI	GGATC	2 cut(s)	744, 804
AoxI	GGCC	3 cut(s)	62, 345, 616
ApeKI	GCWGC	2 cut(s)	386, 893
ApoI	RAATTY	2 cut(s)	172, 301
AspLEI	GCGC	1 cut(s)	556
AspS9I	GGNCC	4 cut(s)	34, 457, 463, 728
AsuC2I	CCSGG	2 cut(s)	461, 560
AsuHPI	GGTGA	3 cut(s)	4, 503, 676
AsuII	TTCGAA	1 cut(s)	148
AvaII	GGWCC	4 cut(s)	34, 457, 463, 728
BaeGI	GKGCMC	1 cut(s)	489
BalI	TGGCCA	1 cut(s)	64
BanI	GGYRCC	2 cut(s)	484, 565
BanII	GRGCYC	2 cut(s)	606, 761
BarI	GAAGNNNNNNTAC	2 cut(s)	635, 667
BbvI	GCAGC	2 cut(s)	398, 880
BccI	CCATC	1 cut(s)	404
BciT130I	CCWGG	2 cut(s)	515, 615
BcnI	CCSGG	2 cut(s)	461, 560
BcoDI	GTCTC	8 cut(s)	62, 94, 210, 218, 689, 769, 818, 878
BcuI	ACTAGT	1 cut(s)	571
BfaI	CTAG	3 cut(s)	503, 548, 572
BisI	GCNGC	2 cut(s)	387, 894
BlpI	GCTNAGC	1 cut(s)	390
BlsI	GCNGC	2 cut(s)	388, 895
BmcAI	AGTACT	1 cut(s)	116
Bme1390I	CCNGG	4 cut(s)	461, 515, 560, 615
Bme18I	GGWCC	4 cut(s)	34, 457, 463, 728
BmgT120I	GGNCC	4 cut(s)	34, 457, 463, 728
BmiI	GGNNCC	5 cut(s)	464, 486, 567, 603, 729
BmrFI	CCNGG	4 cut(s)	461, 515, 560, 615
BmsI	GCATC	1 cut(s)	421
Bpu1102I	GCTNAGC	1 cut(s)	390
Bpu14I	TTCGAA	1 cut(s)	148
BpuMI	CCSGG	2 cut(s)	461, 560
BsaAI	YACGTR	1 cut(s)	598
BsaBI	GATNNNNATC	1 cut(s)	276
BsaI	GGTCTC	2 cut(s)	62, 769
BsaJI	CCNNGG	2 cut(s)	16, 690
BsaXI	ACNNNNNCTCC	2 cut(s)	593, 623
Bsc4I	CCNNNNNNNGG	1 cut(s)	661
Bse3DI	GCAATG	1 cut(s)	888
Bse8I	GATNNNNATC	1 cut(s)	276
BseBI	CCWGG	2 cut(s)	515, 615
BseDI	CCNNGG	2 cut(s)	16, 690
BseGI	GGATG	2 cut(s)	415, 826
BseJI	GATNNNNATC	1 cut(s)	276
BseLI	CCNNNNNNNGG	1 cut(s)	661
BseMI	GCAATG	1 cut(s)	888
BseMII	CTCAG	4 cut(s)	105, 381, 459, 648
BseRI	GAGGAG	1 cut(s)	727
BseSI	GKGCMC	1 cut(s)	489
BseXI	GCAGC	2 cut(s)	398, 880
BsgI	GTGCAG	1 cut(s)	566
Bsh1236I	CGCG	1 cut(s)	851
BshFI	GGCC	3 cut(s)	64, 347, 618
BshNI	GGYRCC	2 cut(s)	484, 565
BsiSI	CCGG	2 cut(s)	460, 560
BslI	CCNNNNNNNGG	1 cut(s)	661
BsmAI	GTCTC	8 cut(s)	62, 94, 210, 218, 689, 769, 818, 878
BsmBI	CGTCTC	3 cut(s)	210, 218, 689
BsnI	GGCC	3 cut(s)	64, 347, 618
Bso31I	GGTCTC	2 cut(s)	62, 769
Bsp119I	TTCGAA	1 cut(s)	148
Bsp1286I	GDGCHC	3 cut(s)	489, 606, 761
Bsp1407I	TGTACA	1 cut(s)	837
Bsp143I	GATC	4 cut(s)	271, 448, 749, 796
Bsp1720I	GCTNAGC	1 cut(s)	390
BspACI	CCGC	7 cut(s)	95, 136, 141, 297, 354, 779, 851
BspANI	GGCC	3 cut(s)	64, 347, 618
BspCNI	CTCAG	4 cut(s)	104, 382, 458, 647
BspFNI	CGCG	1 cut(s)	851
BspLI	GGNNCC	5 cut(s)	464, 486, 567, 603, 729
BspPI	GGATC	2 cut(s)	744, 804
BspT104I	TTCGAA	1 cut(s)	148
BspT107I	GGYRCC	2 cut(s)	484, 565
BspTNI	GGTCTC	2 cut(s)	62, 769
BsrBI	CCGCTC	1 cut(s)	138
BsrDI	GCAATG	1 cut(s)	888
BsrGI	TGTACA	1 cut(s)	837
BssECI	CCNNGG	2 cut(s)	16, 690
BssMI	GATC	4 cut(s)	271, 448, 749, 796
BssT1I	CCWWGG	1 cut(s)	690
Bst2UI	CCWGG	2 cut(s)	515, 615
Bst4CI	ACNGT	6 cut(s)	108, 131, 229, 256, 343, 542
BstAUI	TGTACA	1 cut(s)	837
BstBAI	YACGTR	1 cut(s)	598
BstBI	TTCGAA	1 cut(s)	148
BstDEI	CTNAG	5 cut(s)	91, 247, 390, 445, 634
BstDSI	CCRYGG	1 cut(s)	16
BstF5I	GGATG	2 cut(s)	415, 826
BstFNI	CGCG	1 cut(s)	851
BstHHI	GCGC	1 cut(s)	556
BstKTI	GATC	4 cut(s)	274, 451, 752, 799
BstMAI	GTCTC	8 cut(s)	62, 94, 210, 218, 689, 769, 818, 878
BstMBI	GATC	4 cut(s)	271, 448, 749, 796
BstMWI	GCNNNNNNNGC	1 cut(s)	553
BstNI	CCWGG	2 cut(s)	515, 615
BstSCI	CCNGG	4 cut(s)	459, 513, 558, 613
BstSLI	GKGCMC	1 cut(s)	489
BstUI	CGCG	1 cut(s)	851
BstV1I	GCAGC	2 cut(s)	398, 880
BsuRI	GGCC	3 cut(s)	64, 347, 618
BtgI	CCRYGG	1 cut(s)	16
BtsCI	GGATG	2 cut(s)	415, 826
BtsI	GCAGTG	1 cut(s)	578
BtsIMutI	CAGTG	4 cut(s)	237, 261, 339, 578
CfoI	GCGC	1 cut(s)	556
Cfr13I	GGNCC	4 cut(s)	34, 457, 463, 728
CsiI	ACCWGGT	1 cut(s)	513
Csp6I	GTAC	7 cut(s)	82, 115, 127, 652, 733, 838, 847
CviAII	CATG	5 cut(s)	60, 211, 607, 708, 768
CviQI	GTAC	7 cut(s)	82, 115, 127, 652, 733, 838, 847
DdeI	CTNAG	5 cut(s)	91, 247, 390, 445, 634
DpnI	GATC	4 cut(s)	273, 450, 751, 798
DpnII	GATC	4 cut(s)	271, 448, 749, 796
DraIII	CACNNNGTG	1 cut(s)	562
EaeI	YGGCCR	1 cut(s)	62
EciI	GGCGGA	1 cut(s)	130
Eco130I	CCWWGG	1 cut(s)	690
Eco24I	GRGCYC	2 cut(s)	606, 761
Eco31I	GGTCTC	2 cut(s)	62, 769
Eco47I	GGWCC	4 cut(s)	34, 457, 463, 728
EcoRI	GAATTC	1 cut(s)	301
EcoRII	CCWGG	2 cut(s)	513, 613
EcoT14I	CCWWGG	1 cut(s)	690
EcoT38I	GRGCYC	2 cut(s)	606, 761
ErhI	CCWWGG	1 cut(s)	690
Esp3I	CGTCTC	3 cut(s)	210, 218, 689
FaeI	CATG	5 cut(s)	63, 214, 610, 711, 771
FalI	AAGNNNNNCTT	4 cut(s)	170, 202, 520, 552
FatI	CATG	5 cut(s)	59, 210, 606, 707, 767
FauI	CCCGC	2 cut(s)	143, 290
Fnu4HI	GCNGC	2 cut(s)	387, 894
FokI	GGATG	2 cut(s)	422, 833
FriOI	GRGCYC	2 cut(s)	606, 761
Fsp4HI	GCNGC	2 cut(s)	387, 894
FspBI	CTAG	3 cut(s)	503, 548, 572
GlaI	GCGC	1 cut(s)	555
GluI	GCNGC	2 cut(s)	387, 894
HaeIII	GGCC	3 cut(s)	64, 347, 618
HapII	CCGG	2 cut(s)	460, 560
HhaI	GCGC	1 cut(s)	556
Hin1II	CATG	5 cut(s)	63, 214, 610, 711, 771
Hin6I	GCGC	1 cut(s)	554
HinP1I	GCGC	1 cut(s)	554
HincII	GTYRAC	1 cut(s)	520
HindII	GTYRAC	1 cut(s)	520
HinfI	GANTC	2 cut(s)	532, 632
HpaII	CCGG	2 cut(s)	460, 560
HphI	GGTGA	3 cut(s)	4, 503, 676
Hpy166II	GTNNAC	2 cut(s)	520, 735
Hpy188I	TCNGA	5 cut(s)	282, 307, 448, 705, 901
Hpy8I	GTNNAC	2 cut(s)	520, 735
HpyAV	CCTTC	2 cut(s)	499, 522
HpyCH4III	ACNGT	6 cut(s)	108, 131, 229, 256, 343, 542
HpyCH4IV	ACGT	4 cut(s)	597, 698, 737, 880
HpyCH4V	TGCA	3 cut(s)	155, 417, 583
HpyF10VI	GCNNNNNNNGC	1 cut(s)	553
HpyF3I	CTNAG	5 cut(s)	91, 247, 390, 445, 634
HpySE526I	ACGT	4 cut(s)	597, 698, 737, 880
Hsp92II	CATG	5 cut(s)	63, 214, 610, 711, 771
HspAI	GCGC	1 cut(s)	554
Kzo9I	GATC	4 cut(s)	271, 448, 749, 796
LmnI	GCTCC	3 cut(s)	143, 316, 601
Lsp1109I	GCAGC	2 cut(s)	398, 880
LweI	GCATC	1 cut(s)	421
MabI	ACCWGGT	1 cut(s)	513
MaeI	CTAG	3 cut(s)	503, 548, 572
MaeII	ACGT	4 cut(s)	597, 698, 737, 880
MaeIII	GTNAC	5 cut(s)	10, 250, 576, 664, 881
MalI	GATC	4 cut(s)	273, 450, 751, 798
MbiI	CCGCTC	1 cut(s)	138
MboI	GATC	4 cut(s)	271, 448, 749, 796
MboII	GAAGA	2 cut(s)	872, 904
MhlI	GDGCHC	3 cut(s)	489, 606, 761
MlsI	TGGCCA	1 cut(s)	64
MluCI	AATT	4 cut(s)	150, 159, 172, 301
MluNI	TGGCCA	1 cut(s)	64
MlyI	GAGTC	2 cut(s)	541, 626
MmeI	TCCRAC	1 cut(s)	901
MnlI	CCTC	4 cut(s)	55, 82, 705, 837
Mox20I	TGGCCA	1 cut(s)	64
MscI	TGGCCA	1 cut(s)	64
MseI	TTAA	1 cut(s)	639
MslI	CAYNNNNRTG	1 cut(s)	766
Msp20I	TGGCCA	1 cut(s)	64
MspA1I	CMGCKG	2 cut(s)	95, 389
MspI	CCGG	2 cut(s)	460, 560
MspR9I	CCNGG	4 cut(s)	461, 515, 560, 615
MvaI	CCWGG	2 cut(s)	515, 615
MvnI	CGCG	1 cut(s)	851
MwoI	GCNNNNNNNGC	1 cut(s)	553
NciI	CCSGG	2 cut(s)	461, 560
NdeII	GATC	4 cut(s)	271, 448, 749, 796
NlaIII	CATG	5 cut(s)	63, 214, 610, 711, 771
NlaIV	GGNNCC	5 cut(s)	464, 486, 567, 603, 729
NmuCI	GTSAC	4 cut(s)	10, 576, 664, 881
NspV	TTCGAA	1 cut(s)	148
PkrI	GCNGC	2 cut(s)	388, 895
PleI	GAGTC	2 cut(s)	540, 626
PpsI	GAGTC	2 cut(s)	540, 626
Ppu21I	YACGTR	1 cut(s)	598
Psp6I	CCWGG	2 cut(s)	513, 613
PspGI	CCWGG	2 cut(s)	513, 613
PspN4I	GGNNCC	5 cut(s)	464, 486, 567, 603, 729
PspPI	GGNCC	4 cut(s)	34, 457, 463, 728
PvuII	CAGCTG	1 cut(s)	389
RsaI	GTAC	7 cut(s)	83, 116, 128, 653, 734, 839, 848
RsaNI	GTAC	7 cut(s)	82, 115, 127, 652, 733, 838, 847
RseI	CAYNNNNRTG	1 cut(s)	766
SaqAI	TTAA	1 cut(s)	639
SatI	GCNGC	2 cut(s)	387, 894
Sau3AI	GATC	4 cut(s)	271, 448, 749, 796
Sau96I	GGNCC	4 cut(s)	34, 457, 463, 728
ScaI	AGTACT	1 cut(s)	116
SchI	GAGTC	2 cut(s)	541, 626
ScrFI	CCNGG	4 cut(s)	461, 515, 560, 615
SduI	GDGCHC	3 cut(s)	489, 606, 761
SexAI	ACCWGGT	1 cut(s)	513
SfaNI	GCATC	1 cut(s)	421
SfuI	TTCGAA	1 cut(s)	148
SinI	GGWCC	4 cut(s)	34, 457, 463, 728
SmiMI	CAYNNNNRTG	1 cut(s)	766
SpeI	ACTAGT	1 cut(s)	571
Sse9I	AATT	4 cut(s)	150, 159, 172, 301
SsiI	CCGC	7 cut(s)	95, 136, 141, 297, 354, 779, 851
SspMI	CTAG	3 cut(s)	503, 548, 572
StyD4I	CCNGG	4 cut(s)	459, 513, 558, 613
StyI	CCWWGG	1 cut(s)	690
TaaI	ACNGT	6 cut(s)	108, 131, 229, 256, 343, 542
TaiI	ACGT	4 cut(s)	600, 701, 740, 883
TaqI	TCGA	1 cut(s)	148
TasI	AATT	4 cut(s)	150, 159, 172, 301
TatI	WGTACW	3 cut(s)	81, 114, 837
Tru1I	TTAA	1 cut(s)	639
Tru9I	TTAA	1 cut(s)	639
TscAI	CASTG	4 cut(s)	244, 261, 346, 585
TseFI	GTSAC	4 cut(s)	10, 576, 664, 881
TseI	GCWGC	2 cut(s)	386, 893
Tsp45I	GTSAC	4 cut(s)	10, 576, 664, 881
TspDTI	ATGAA	1 cut(s)	210
TspGWI	ACGGA	4 cut(s)	455, 683, 720, 742
TspRI	CASTG	4 cut(s)	244, 261, 346, 585
VpaK11BI	GGWCC	4 cut(s)	34, 457, 463, 728
XapI	RAATTY	2 cut(s)	172, 301
XspI	CTAG	3 cut(s)	503, 548, 572
ZrmI	AGTACT	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.