Rorug03G0077200

Protein of unknown function, DUF604

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0006722
Physical Location & Seq
Forward (+)
6008954 .. 6018616
9663 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0077200.1

Sequence Viewer

Length: 3240 bp
ATGGCCATGAGGCTACTCTCACCACCCTCCTCTTCTCTCTCACAACCCACCAGGCTCTTCTGCTTACATTCCGCCTCAACCAGACCAAAACCCATTTCAGTCCCAACCCTTCTCTTCCAAAGGACCCCAAAACGGTTCGTTTTCTCCAAGAGAATGGTGGTCAAAGCTTGTGTGAAAGTGGAGGAGAAGAACGTTCAAGAATCTTCTGGAAGTGAGTGGGGGAAGGTCTCTGCTGTGCTGTTTGACATGGATGGAGTTCTCTGCAATAGCGAAGAGCCTTCTAGAAGGGCCGCAGTCCAAGTTTTCGCCGAAATGGGGGTTGAGACCACGGTGGAGGACTTTGTTCCTTTCGGAGGAACTGGTGAAGCGAATTTTTTAGGAGGTGTTGCTGCTGTTAAGGGGGTAAAGGGATTCGATACCGAGGCAGCAAAGAAGAGATTCTTTGAGATATATTTGGATAAGTATGCAAAACCAGATTCTGGAATAGGATACCCCGGTGCCCTTGAACTTGTTACTCAGTGTAAAAGCAAAGGCCTTAAGGTTGCTGTTGCATCCAGTGCTGATCTAATCAAGGTTAAGGCAAATCTAGCTGCTGCCAATTTACCACTTTCATTGTTTGATGCTATTGTGTCAGCAGATGCTTTTGAGAATCTGAAACCTTCTCCTGATATATTCTTGGCTGCATCAAAGATCTTGGATGTAATCCCTAGTGAGTGTATTGTAATTGAGGATGCACTAGCTGGAGTGCAGGCTGCCAACGCTGCAAAAATGAGATGTATAGCTGTGAAAACTACTCTATCAGAAGAGGCTCTAATGAGTGCTGGTCCATCCATTATTCGAAATCAAATAGGAAATATTTCACTCGATGATATTCTCAGTGGTGGCTCTGATGGCTATAATGGGAAGATGCAGGGACTTCAATTTCTTAATTCTTCATCTCAAACCACATCAGAAAAGCTCACGGAAAGAGATACTGATTCTTCTGGTGCTGCCAATGACGGCATTTTCTCGTTTGGAGGGGTTGTTCGGCGAGATATAGTGAAATATGGAAGCTTGGGGATTGCTTTGTCTTGTCTTGCCTTCACCATATCAAACTGGAAGGCAATGCAATATGCATCACCTAACGCTATTTGGAATGTGATATTTGGGGTCAACCAGCCATCTATTGCACAGAAAGAAGGTGAATCAAAGTTGGAAAGAATCCAACAATTTGTGAACTATATATCTGACCTGGAAACCAGAGGAACTGCTCCAATTGTGCCAGAATTTCCACCAAAACTTGATTGGTTGAATACAGCTCCCATCAAGTTAAGCAAGGATCTCAAAGGAAAAGTGGTTGTGCTGGACTTTTGGACCTATTGCTGTATAAATTGTATGCATGTACTGCCAGACCTGGAGTTTTTGGAGAAAAAATACAAAGATATGCCGTTCACTGTGGTGGGAGTTCATTCGGCAAAGTTTGATAATGAGAAGGATTTAGAGGCCATTCGGAATGCAGTGTTACGCTATGACATCACTCACCCAGTAGTCAATGATGGAGATATGTATCTATGGAGAGAGCTAGGTGTGAATTCATGGCCAACATTTGCTGTTGTTGGGCCCAATGGAAGACTTCTTGCTCAACTATCAGGTGAAGGTCGCCGCAAGGATCTTGATGATTTGGTGGAGGCAGCTCTTTTGTACTATGGCCGAAAGAAAATCTTGGACAATGCACCACTTCCTTTGCGTTTGGAGAAAGATAATGATCCCCGTTTGTTTACGTCTCCATTAAAGTTTCCTGGAAAGCTGGCAGTTGATGTCGAAAACAAGAGGCTCTTCATTTCAGACAGTAATCACAACCGCATAGTTGTAACCGACCTAGATGGAAATTTTATTGTCCAAATTGGAAGTACAGGAGAGGAAGGTCTACGTGATGGTTCTTTTGATGATGCCACCTTTAATCGGCCTCAGGGCCTGGCTTACAATACAAAAAAAAATCTTCTCTACGTCGCGGATACTGAAAACCATGCGTTGAGGGAGATTGACTTTGTTAACGAAACAGTGCGTACTCTAGCTGGAAATGGAACCAAAGGCTCTGATTACAGAGGAGGAGGAAAAGGAAGCACTCAGCTACTCAACTCTCCATGGGATGTCTGCTTTCATCCAGTCAATGAGAAAGTTTATATTGCCATGGCTGGCCAACATCAAATTTGGCAACTTGATACAGCTGATGGGATTACTAGAGCATTTAGTGGTGATGGTTATGAAAGAAATCTGAATGGATCAAGCTCTTCAAGCACATCATTTGCACAGCCTTCTGGAATTTCATTATCTCCTGATATGACGGAACTGTATATTGCTGATAGTGAGAGTAGCTCCATCAGGGCAGTTGTTTTAAAAACAGGAGGATCAAGATTGCTAGCGGGTGGTGATCCATTTTTCTCAGACAATTTGTTTAAGTTTGGGGACCATGATGGAATGGGTTCTGAAGTACTTCTTCAACATCCACTCGGTGTCTTGTGTACAAAGGGCAGTCAAATCTATATAGCAGATAGCTATAATCACAAGATAAAGAAGCTAGATCCATCTAGTAAAAGAGTTAGTACCATAGCAGGGACAGGGAAAGCTGGTTTCAAGGACGGAACAGCTCTTGAAGCTCAGCTTTCAGAGCCATCAGGAATCACTGAAGCGAAAAATGGGAGACTCTTCATAGCCGATACAAACAACAGTCTAATCAGATATATTGACTTAAGCAGCAAAGAACCTGAACTTCTTACTCTGGAGCTAAAAGGGGTTCAGCCTCCCACAGCAAAATCCAAGGCTTTGAAACGCCTCAGAAGGCGCTCATCAGCTGACACACAGACCGTTACAGTTGATGGTGGTTCATCCAATGAGGGGAACCTCTTTATTAAAATATCATTACCTGAAGAGTATCATTTTTCAAAGGAAGCTCGCAGTAAGTTTAGTGTTGAAACTGAGCCTGAAACTGCAGTTCTCGTTGATCCCTCAGATGGATATCTTAGTCCAGAAGGATCAGCAGTACTTCATTTTAAGAGACCCTCTCCCTCAGCTTCTGTGGGGAGAGTTGATTGCAAGGTTTACTATTGCAAAGAAGATGAGGTCTGTTTATACCAATCCTTATTATTTGAGGTACCATTCCATGAGGAAATTCCAGAATCCAACCCAGAAGAAATCACACTTGCCTACCTTGTAAAGCCTAGAACTTCAACAGACAGCTTACAGCTACCAGTTGCACGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF604

Protein Analysis

1079

Amino Acids

117.67

Weight (kDa)

5.71

Isoelectric Point (pI)

38.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrolase PF00702 77 - 255 2.5e-24 haloacid dehalogenase-like hydrolase
HAD_2 PF13419 79 - 262 3e-22 Haloacid dehalogenase-like hydrolase
Redoxin PF08534 432 - 547 1.1e-08 Redoxin
AhpC-TSA PF00578 433 - 538 2.2e-07 AhpC/TSA family
Thioredoxin_8 PF13905 443 - 537 1.8e-16 Thioredoxin-like
NHL PF01436 646 - 672 2.4e-06 NHL repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 3130
AccB1I GGYRCC 2 cut(s) 497, 3130
AccB7I CCANNNNNTGG 1 cut(s) 479
AccI GTMKAC 1 cut(s) 1906
AccII CGCG 1 cut(s) 1991
AciI CCGC 6 cut(s) 72, 291, 1642, 1840, 1991, 2402
AclI AACGTT 1 cut(s) 192
AclWI GGATC 9 cut(s) 1326, 1656, 1739, 2269, 2395, 2405, 2555, 2975, 3019
AcoI YGGCCR 4 cut(s) 3, 1577, 1687, 2176
AcsI RAATTY 7 cut(s) 370, 1265, 1570, 1867, 2187, 2301, 3147
AcuI CTGAAG 3 cut(s) 2487, 2685, 2925
AdeI CACNNNGTG 1 cut(s) 2492
AfaI GTAC 9 cut(s) 1383, 1682, 1891, 2047, 2472, 2503, 2584, 3021, 3132
AfiI CCNNNNNNNGG 8 cut(s) 132, 315, 353, 479, 1941, 2592, 2874, 2990
AflII CTTAAG 2 cut(s) 536, 2728
AjnI CCWGG 5 cut(s) 50, 1230, 1392, 1777, 1953
AjuI GAANNNNNNNTTGG 2 cut(s) 79, 111
AleI CACNNNNGTG 1 cut(s) 1436
AloI GAACNNNNNNTCC 2 cut(s) 1008, 1040
Alw26I GTCTC 5 cut(s) 232, 317, 1767, 2674, 3028
AlwI GGATC 9 cut(s) 1326, 1656, 1739, 2269, 2395, 2405, 2555, 2975, 3019
AlwNI CAGNNNCTG 3 cut(s) 479, 1954, 3053
ApaI GGGCCC 1 cut(s) 1602
ApoI RAATTY 7 cut(s) 370, 1265, 1570, 1867, 2187, 2301, 3147
Asp700I GAANNNNTTC 4 cut(s) 437, 856, 2461, 2472
Asp718I GGTACC 1 cut(s) 3130
AspLEI GCGC 1 cut(s) 2823
AspS9I GGNCC 8 cut(s) 123, 288, 824, 1353, 1598, 1599, 1951, 2446
AsuC2I CCSGG 1 cut(s) 495
AsuHPI GGTGA 9 cut(s) 12, 374, 1075, 1110, 1193, 1511, 1643, 2246, 2420
AsuII TTCGAA 1 cut(s) 838
AsuNHI GCTAGC 1 cut(s) 2398
AvaII GGWCC 4 cut(s) 123, 824, 1353, 2446
AxyI CCTNAGG 1 cut(s) 1947
BaeGI GKGCMC 2 cut(s) 502, 1602
BaeI ACNNNNGTAYC 2 cut(s) 481, 514
BalI TGGCCA 3 cut(s) 5, 1579, 2178
BanI GGYRCC 2 cut(s) 497, 3130
BanII GRGCYC 1 cut(s) 1602
BbsI GAAGAC 1 cut(s) 1615
BbvCI CCTCAGC 1 cut(s) 3046
BceAI ACGGC 2 cut(s) 1015, 1411
BciT130I CCWGG 5 cut(s) 52, 1232, 1394, 1779, 1955
BciVI GTATCC 2 cut(s) 482, 1987
BcnI CCSGG 1 cut(s) 495
BcoDI GTCTC 5 cut(s) 232, 317, 1767, 2674, 3028
BfmI CTRYAG 1 cut(s) 2967
BfoI RGCGCY 1 cut(s) 2824
BfrI CTTAAG 2 cut(s) 536, 2728
BfuI GTATCC 2 cut(s) 482, 1987
BglII AGATCT 1 cut(s) 690
BlpI GCTNAGC 1 cut(s) 2637
BmcAI AGTACT 2 cut(s) 2472, 3021
Bme1390I CCNGG 6 cut(s) 52, 495, 1232, 1394, 1779, 1955
Bme18I GGWCC 4 cut(s) 123, 824, 1353, 2446
BmgT120I GGNCC 8 cut(s) 123, 288, 824, 1353, 1598, 1599, 1951, 2446
BmiI GGNNCC 7 cut(s) 125, 499, 1600, 2065, 2447, 2879, 3132
BmrFI CCNGG 6 cut(s) 52, 495, 1232, 1394, 1779, 1955
BmrI ACTGGG 1 cut(s) 1517
BmsI GCATC 8 cut(s) 560, 610, 628, 692, 721, 897, 1124, 1918
BmtI GCTAGC 1 cut(s) 2402
BmuI ACTGGG 1 cut(s) 1517
BpiI GAAGAC 1 cut(s) 1615
BplI GAGNNNNNCTC 4 cut(s) 2339, 2371, 3025, 3057
BpmI CTGGAG 3 cut(s) 762, 1415, 2780
Bpu10I CCTNAGC 1 cut(s) 3046
Bpu1102I GCTNAGC 1 cut(s) 2637
Bpu14I TTCGAA 1 cut(s) 838
BpuMI CCSGG 1 cut(s) 495
BsaAI YACGTR 1 cut(s) 1910
BsaBI GATNNNNATC 3 cut(s) 1545, 1743, 2994
BsaI GGTCTC 3 cut(s) 232, 317, 3028
BsaJI CCNNGG 6 cut(s) 327, 420, 493, 2123, 2169, 2796
BsaXI ACNNNNNCTCC 2 cut(s) 1008, 1038
Bsc4I CCNNNNNNNGG 8 cut(s) 132, 315, 353, 479, 1941, 2592, 2874, 2990
Bse1I ACTGG 6 cut(s) 364, 555, 1100, 1523, 2144, 3227
Bse21I CCTNAGG 1 cut(s) 1947
Bse3DI GCAATG 1 cut(s) 1110
Bse8I GATNNNNATC 3 cut(s) 1545, 1743, 2994
BseBI CCWGG 5 cut(s) 52, 1232, 1394, 1779, 1955
BseDI CCNNGG 6 cut(s) 327, 420, 493, 2123, 2169, 2796
BseGI GGATG 9 cut(s) 256, 551, 703, 736, 827, 2134, 2140, 2482, 2864
BseJI GATNNNNATC 3 cut(s) 1545, 1743, 2994
BseLI CCNNNNNNNGG 8 cut(s) 132, 315, 353, 479, 1941, 2592, 2874, 2990
BseMI GCAATG 1 cut(s) 1110
BseNI ACTGG 6 cut(s) 364, 555, 1100, 1523, 2144, 3227
BseRI GAGGAG 4 cut(s) 19, 197, 2100, 2103
BseSI GKGCMC 2 cut(s) 502, 1602
BsgI GTGCAG 1 cut(s) 767
Bsh1236I CGCG 1 cut(s) 1991
BshNI GGYRCC 2 cut(s) 497, 3130
BsiSI CCGG 1 cut(s) 495
BslFI GGGAC 4 cut(s) 86, 927, 2459, 2608
BslI CCNNNNNNNGG 8 cut(s) 132, 315, 353, 479, 1941, 2592, 2874, 2990
BsmAI GTCTC 5 cut(s) 232, 317, 1767, 2674, 3028
BsmBI CGTCTC 1 cut(s) 1767
BsmFI GGGAC 4 cut(s) 86, 927, 2459, 2608
BsmI GAATGC 1 cut(s) 1498
Bso31I GGTCTC 3 cut(s) 232, 317, 3028
Bsp119I TTCGAA 1 cut(s) 838
Bsp120I GGGCCC 1 cut(s) 1598
Bsp1286I GDGCHC 2 cut(s) 502, 1602
Bsp1407I TGTACA 1 cut(s) 2501
Bsp1720I GCTNAGC 1 cut(s) 2637
Bsp19I CCATGG 2 cut(s) 2123, 2169
BspACI CCGC 6 cut(s) 72, 291, 1642, 1840, 1991, 2402
BspFNI CGCG 1 cut(s) 1991
BspLI GGNNCC 7 cut(s) 125, 499, 1600, 2065, 2447, 2879, 3132
BspMAI CTGCAG 1 cut(s) 2971
BspOI GCTAGC 1 cut(s) 2402
BspPI GGATC 9 cut(s) 1326, 1656, 1739, 2269, 2395, 2405, 2555, 2975, 3019
BspQI GCTCTTC 4 cut(s) 62, 267, 1820, 2275
BspT104I TTCGAA 1 cut(s) 838
BspT107I GGYRCC 2 cut(s) 497, 3130
BspTI CTTAAG 2 cut(s) 536, 2728
BspTNI GGTCTC 3 cut(s) 232, 317, 3028
BsrDI GCAATG 1 cut(s) 1110
BsrGI TGTACA 1 cut(s) 2501
BsrI ACTGG 6 cut(s) 364, 555, 1100, 1523, 2144, 3227
BssECI CCNNGG 6 cut(s) 327, 420, 493, 2123, 2169, 2796
BssT1I CCWWGG 3 cut(s) 2123, 2169, 2796
Bst2UI CCWGG 5 cut(s) 52, 1232, 1394, 1779, 1955
Bst4CI ACNGT 9 cut(s) 135, 331, 1435, 1829, 2041, 2331, 2708, 2845, 2851
BstAFI CTTAAG 2 cut(s) 536, 2728
BstAPI GCANNNNNTGC 2 cut(s) 557, 1384
BstAUI TGTACA 1 cut(s) 2501
BstBAI YACGTR 1 cut(s) 1910
BstBI TTCGAA 1 cut(s) 838
BstC8I GCNNGC 6 cut(s) 750, 1788, 2176, 2400, 2932, 3235
BstDSI CCRYGG 3 cut(s) 327, 2123, 2169
BstENI CCTNNNNNAGG 1 cut(s) 351
BstF5I GGATG 9 cut(s) 256, 551, 703, 736, 827, 2134, 2140, 2482, 2864
BstFNI CGCG 1 cut(s) 1991
BstH2I RGCGCY 1 cut(s) 2824
BstHHI GCGC 1 cut(s) 2823
BstMAI GTCTC 5 cut(s) 232, 317, 1767, 2674, 3028
BstMWI GCNNNNNNNGC 9 cut(s) 557, 587, 758, 761, 891, 1384, 2274, 2633, 2647
BstNI CCWGG 5 cut(s) 52, 1232, 1394, 1779, 1955
BstNSI RCATGY 1 cut(s) 1382
BstSCI CCNGG 6 cut(s) 50, 493, 1230, 1392, 1777, 1953
BstSFI CTRYAG 1 cut(s) 2967
BstSLI GKGCMC 2 cut(s) 502, 1602
BstUI CGCG 1 cut(s) 1991
BstV2I GAAGAC 1 cut(s) 1615
BstX2I RGATCY 4 cut(s) 690, 1318, 1648, 2560
BstXI CCANNNNNNTGG 1 cut(s) 154
BstYI RGATCY 4 cut(s) 690, 1318, 1648, 2560
Bsu36I CCTNAGG 1 cut(s) 1947
BsuI GTATCC 2 cut(s) 482, 1987
BtgI CCRYGG 3 cut(s) 327, 2123, 2169
BtsCI GGATG 9 cut(s) 256, 551, 703, 736, 827, 2134, 2140, 2482, 2864
BtsI GCAGTG 1 cut(s) 1503
BtsIMutI CAGTG 7 cut(s) 524, 562, 883, 1431, 1503, 2046, 2661
Cac8I GCNNGC 6 cut(s) 750, 1788, 2176, 2400, 2932, 3235
CaiI CAGNNNCTG 3 cut(s) 479, 1954, 3053
CfoI GCGC 1 cut(s) 2823
Cfr13I GGNCC 8 cut(s) 123, 288, 824, 1353, 1598, 1599, 1951, 2446
Csp6I GTAC 9 cut(s) 1382, 1681, 1890, 2046, 2471, 2502, 2583, 3020, 3131
CspCI CAANNNNNGTGG 4 cut(s) 594, 629, 1704, 1739
CviAII CATG 9 cut(s) 7, 247, 1379, 1575, 2006, 2124, 2170, 2450, 3140
CviQI GTAC 9 cut(s) 1382, 1681, 1890, 2046, 2471, 2502, 2583, 3020, 3131
DraI TTTAAA 1 cut(s) 2376
DraIII CACNNNGTG 1 cut(s) 2492
EaeI YGGCCR 4 cut(s) 3, 1577, 1687, 2176
EciI GGCGGA 1 cut(s) 61
Eco130I CCWWGG 3 cut(s) 2123, 2169, 2796
Eco147I AGGCCT 1 cut(s) 534
Eco24I GRGCYC 1 cut(s) 1602
Eco31I GGTCTC 3 cut(s) 232, 317, 3028
Eco32I GATATC 1 cut(s) 2996
Eco47I GGWCC 4 cut(s) 123, 824, 1353, 2446
Eco57I CTGAAG 3 cut(s) 2487, 2685, 2925
Eco81I CCTNAGG 1 cut(s) 1947
EcoNI CCTNNNNNAGG 1 cut(s) 351
EcoO109I RGGNCCY 2 cut(s) 123, 1951
EcoRI GAATTC 1 cut(s) 1570
EcoRII CCWGG 5 cut(s) 50, 1230, 1392, 1777, 1953
EcoRV GATATC 1 cut(s) 2996
EcoT14I CCWWGG 3 cut(s) 2123, 2169, 2796
EcoT22I ATGCAT 2 cut(s) 1117, 1380
EcoT38I GRGCYC 1 cut(s) 1602
ErhI CCWWGG 3 cut(s) 2123, 2169, 2796
Esp3I CGTCTC 1 cut(s) 1767
FaeI CATG 9 cut(s) 10, 250, 1382, 1578, 2009, 2127, 2173, 2453, 3143
FaqI GGGAC 4 cut(s) 86, 927, 2459, 2608
FatI CATG 9 cut(s) 6, 246, 1378, 1574, 2005, 2123, 2169, 2449, 3139
FauI CCCGC 1 cut(s) 2395
FblI GTMKAC 1 cut(s) 1906
FokI GGATG 9 cut(s) 263, 538, 710, 743, 814, 2127, 2141, 2469, 2851
FriOI GRGCYC 1 cut(s) 1602
GlaI GCGC 1 cut(s) 2822
GsuI CTGGAG 3 cut(s) 762, 1415, 2780
HaeII RGCGCY 1 cut(s) 2824
HapII CCGG 1 cut(s) 495
HhaI GCGC 1 cut(s) 2823
Hin1II CATG 9 cut(s) 10, 250, 1382, 1578, 2009, 2127, 2173, 2453, 3143
Hin6I GCGC 1 cut(s) 2821
HinP1I GCGC 1 cut(s) 2821
HincII GTYRAC 2 cut(s) 1153, 2032
HindII GTYRAC 2 cut(s) 1153, 2032
HindIII AAGCTT 2 cut(s) 165, 1051
HpaI GTTAAC 1 cut(s) 2032
HpaII CCGG 1 cut(s) 495
HphI GGTGA 9 cut(s) 12, 374, 1075, 1110, 1193, 1511, 1643, 2246, 2420
Hpy166II GTNNAC 8 cut(s) 1153, 1216, 1431, 1758, 1907, 2032, 2502, 3079
Hpy8I GTNNAC 8 cut(s) 1153, 1216, 1431, 1758, 1907, 2032, 2502, 3079
Hpy99I CGWCG 1 cut(s) 1991
HpyCH4III ACNGT 9 cut(s) 135, 331, 1435, 1829, 2041, 2331, 2708, 2845, 2851
HpyCH4IV ACGT 4 cut(s) 192, 1760, 1909, 1986
HpyF10VI GCNNNNNNNGC 9 cut(s) 557, 587, 758, 761, 891, 1384, 2274, 2633, 2647
HpySE526I ACGT 4 cut(s) 192, 1760, 1909, 1986
Hsp92II CATG 9 cut(s) 10, 250, 1382, 1578, 2009, 2127, 2173, 2453, 3143
HspAI GCGC 1 cut(s) 2821
KpnI GGTACC 1 cut(s) 3134
KspAI GTTAAC 1 cut(s) 2032
LguI GCTCTTC 4 cut(s) 62, 267, 1820, 2275
LmnI GCTCC 4 cut(s) 1255, 1303, 2360, 2761
LweI GCATC 8 cut(s) 560, 610, 628, 692, 721, 897, 1124, 1918
MaeII ACGT 4 cut(s) 192, 1760, 1909, 1986
MaeIII GTNAC 4 cut(s) 511, 1500, 1849, 2845
MfeI CAATTG 1 cut(s) 1254
MflI RGATCY 4 cut(s) 690, 1318, 1648, 2560
MhlI GDGCHC 2 cut(s) 502, 1602
MlsI TGGCCA 3 cut(s) 5, 1579, 2178
MluNI TGGCCA 3 cut(s) 5, 1579, 2178
MlyI GAGTC 1 cut(s) 2676
MmeI TCCRAC 3 cut(s) 1173, 1228, 3183
Mox20I TGGCCA 3 cut(s) 5, 1579, 2178
Mph1103I ATGCAT 2 cut(s) 1117, 1380
MroXI GAANNNNTTC 4 cut(s) 437, 856, 2461, 2472
MscI TGGCCA 3 cut(s) 5, 1579, 2178
MslI CAYNNNNRTG 1 cut(s) 1436
Msp20I TGGCCA 3 cut(s) 5, 1579, 2178
MspA1I CMGCKG 2 cut(s) 2207, 2831
MspCI CTTAAG 2 cut(s) 536, 2728
MspI CCGG 1 cut(s) 495
MspR9I CCNGG 6 cut(s) 52, 495, 1232, 1394, 1779, 1955
MunI CAATTG 1 cut(s) 1254
Mva1269I GAATGC 1 cut(s) 1498
MvaI CCWGG 5 cut(s) 52, 1232, 1394, 1779, 1955
MvnI CGCG 1 cut(s) 1991
MwoI GCNNNNNNNGC 9 cut(s) 557, 587, 758, 761, 891, 1384, 2274, 2633, 2647
NciI CCSGG 1 cut(s) 495
NcoI CCATGG 2 cut(s) 2123, 2169
NheI GCTAGC 1 cut(s) 2398
NlaIII CATG 9 cut(s) 10, 250, 1382, 1578, 2009, 2127, 2173, 2453, 3143
NlaIV GGNNCC 7 cut(s) 125, 499, 1600, 2065, 2447, 2879, 3132
NsiI ATGCAT 2 cut(s) 1117, 1380
NspI RCATGY 1 cut(s) 1382
NspV TTCGAA 1 cut(s) 838
OliI CACNNNNGTG 1 cut(s) 1436
PceI AGGCCT 1 cut(s) 534
PciSI GCTCTTC 4 cut(s) 62, 267, 1820, 2275
PctI GAATGC 1 cut(s) 1498
PdmI GAANNNNTTC 4 cut(s) 437, 856, 2461, 2472
PflMI CCANNNNNTGG 1 cut(s) 479
PfoI TCCNGGA 1 cut(s) 1777
PleI GAGTC 1 cut(s) 2676
PpsI GAGTC 1 cut(s) 2676
Ppu21I YACGTR 1 cut(s) 1910
PpuMI RGGWCCY 1 cut(s) 123
Psp1406I AACGTT 1 cut(s) 192
Psp5II RGGWCCY 1 cut(s) 123
Psp6I CCWGG 5 cut(s) 50, 1230, 1392, 1777, 1953
PspGI CCWGG 5 cut(s) 50, 1230, 1392, 1777, 1953
PspN4I GGNNCC 7 cut(s) 125, 499, 1600, 2065, 2447, 2879, 3132
PspOMI GGGCCC 1 cut(s) 1598
PspPI GGNCC 8 cut(s) 123, 288, 824, 1353, 1598, 1599, 1951, 2446
PspPPI RGGWCCY 1 cut(s) 123
PstI CTGCAG 1 cut(s) 2971
PstNI CAGNNNCTG 3 cut(s) 479, 1954, 3053
PsuI RGATCY 4 cut(s) 690, 1318, 1648, 2560
PvuII CAGCTG 2 cut(s) 2207, 2831
RsaI GTAC 9 cut(s) 1383, 1682, 1891, 2047, 2472, 2503, 2584, 3021, 3132
RsaNI GTAC 9 cut(s) 1382, 1681, 1890, 2046, 2471, 2502, 2583, 3020, 3131
RseI CAYNNNNRTG 1 cut(s) 1436
SapI GCTCTTC 4 cut(s) 62, 267, 1820, 2275
Sau96I GGNCC 8 cut(s) 123, 288, 824, 1353, 1598, 1599, 1951, 2446
ScaI AGTACT 2 cut(s) 2472, 3021
SchI GAGTC 1 cut(s) 2676
ScrFI CCNGG 6 cut(s) 52, 495, 1232, 1394, 1779, 1955
SduI GDGCHC 2 cut(s) 502, 1602
SfaNI GCATC 8 cut(s) 560, 610, 628, 692, 721, 897, 1124, 1918
SfcI CTRYAG 1 cut(s) 2967
SfuI TTCGAA 1 cut(s) 838
SinI GGWCC 4 cut(s) 123, 824, 1353, 2446
SmiMI CAYNNNNRTG 1 cut(s) 1436
SmlI CTYRAG 2 cut(s) 536, 2728
SmoI CTYRAG 2 cut(s) 536, 2728
SseBI AGGCCT 1 cut(s) 534
SsiI CCGC 6 cut(s) 72, 291, 1642, 1840, 1991, 2402
SspI AATATT 1 cut(s) 856
StuI AGGCCT 1 cut(s) 534
StyD4I CCNGG 6 cut(s) 50, 493, 1230, 1392, 1777, 1953
StyI CCWWGG 3 cut(s) 2123, 2169, 2796
TaaI ACNGT 9 cut(s) 135, 331, 1435, 1829, 2041, 2331, 2708, 2845, 2851
TaiI ACGT 4 cut(s) 195, 1763, 1912, 1989
TaqI TCGA 4 cut(s) 414, 838, 864, 1800
TatI WGTACW 6 cut(s) 1381, 1680, 1889, 2470, 2501, 3019
TauI GCSGC 2 cut(s) 293, 1644
TscAI CASTG 7 cut(s) 524, 562, 883, 1438, 1503, 2046, 2668
TspGWI ACGGA 3 cut(s) 977, 2339, 2634
TspRI CASTG 7 cut(s) 524, 562, 883, 1438, 1503, 2046, 2668
Van91I CCANNNNNTGG 1 cut(s) 479
Vha464I CTTAAG 2 cut(s) 536, 2728
VpaK11BI GGWCC 4 cut(s) 123, 824, 1353, 2446
XagI CCTNNNNNAGG 1 cut(s) 351
XapI RAATTY 7 cut(s) 370, 1265, 1570, 1867, 2187, 2301, 3147
XbaI TCTAGA 1 cut(s) 281
XceI RCATGY 1 cut(s) 1382
XcmI CCANNNNNNNNNTGG 2 cut(s) 154, 1281
XmiI GTMKAC 1 cut(s) 1906
XmnI GAANNNNTTC 4 cut(s) 437, 856, 2461, 2472
ZrmI AGTACT 2 cut(s) 2472, 3021
Zsp2I ATGCAT 2 cut(s) 1117, 1380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.