MD04G1134500.v1.1

Protein of unknown function, DUF604

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Reverse (-)
22126097 .. 22128443
2347 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1134500.v1.1.491

Sequence Viewer

Length: 1500 bp
ATGTCTTTTGCAAGATCAAAAACCCTTCACGACCACCCTTTAAATTTCTGGAAATTCCTAACCAGAGCCATTGATGTCCTCTCTCTCGCCATGAAAACAACCCTAACTCTTTGCTCCGTGGCTTCCATCTCTCTCATCTTCTACTTCGCCTTCTCAAACCGCTCCCATAATTTCCCTCCACACCCCAACGTAGTCACCGACTTCAATCAAAACGGCATCTCAGCCGACGGTCACGAAAAGACAAATATTTCACACATTCTGTTTGGCATCGGAGGCTCCGTGGAGTCGTGGGACAAACGCCGACGCTACACCGAGTTGTGGTGGAAGCCTAACGTCACTCGCGGGTTCGTTTGGCTGGACGAGAAACCATCCCCAAACATAACGTGGCTGGAGACCCTTCCACAGTACAGAGTCTCCGAGGACACGTCACGGTTCAAGTACTCGTGTCCGTATGGCTCACGGTCTGCGGTTCGGATGGCGAGAATCGTGAAAGAGAGCTTCGAGCTAGGTTTAGAAAATGTGAGGTGGTTTGTTATGGGGGACGATGATACGGTATATTTCCCCGATAACTTAGTTTCAGTGTTAGCGAAATACGATCACAATCAGATGTACTATATTGGTGGGAACTCGGAGAGTGTGGAGCAAGATGTGATCCACTCATACACTATGGCTTACGGCGGTGGCGGGTTTGCCATTAGTTACCCATTGGCTGCTGAGCTTGTTAAAATTTTGGACGGCTGCATTGATCGGTATGATAAACTCTACGGCTCGGATCAAAAGATCCAGGGTTGCTTGAGCGAGATTGGAGTGCCGCTAACAAAAGAGCTCGGCTTTCACCAACTTGATATACGGGGCAACCCGTATGGTTTGCTAGCGGCGCACCCTGTGACCCCGTTGGTGTCACTCCACCATTTTGACTACGTGGAGTCGATATTTCCAAACCTGAACCCGATTGACTCGGTCAAGAAGTTGGTTAGCGGGTACAAAGTGGATCCGGGCCGGACCGTACAACATAGTTTTTGTTACGACTTGAGGCGTAATTGGTCTGTTTCGGTATCTTGGGGCTACACAGTGCAGTTGTATCCGTTTTTGGTGACGGCTAAGAAGCTGGAAACGGCGTTGCAGACGTTTTGGACGTGGAAGAATTGGGACGCGCGCCTGTTCACGTTTAATACCCAACCCGTCAGTTCGGACCCGTGTGAGAGATCGGTTGTGTATATGTTAGATCGGGTTGAAAGTGTTGGTGGGGGTGAGACCCTGACTACTTACAAGAGGTACAATATTGACAAAGGGCAAAATGATTGCATCCGAAGTGACTACACTCATGCTTTGAAAGTTGAGGTTTTCAATGTCTCAGCTCCCAAATTCAACCCAGACTTGTGGAATAAGGCGCCACGTAGACAATGTTGCAAGATCATCAATGACACAGAAGGAGCTGACAGAGTTGTACAAGTCCAAATTAGAAGCTGCAATGGCTTTGAGAGTGTGACTCCTCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

500

Amino Acids

56.98

Weight (kDa)

7.2

Isoelectric Point (pI)

39.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fringe PF02434 154 - 280 4.6e-12 Fringe-like
DUF604 PF04646 215 - 470 1.5e-105 Protein of unknown function, DUF604
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1390
AccBSI CCGCTC 1 cut(s) 162
AccI GTMKAC 1 cut(s) 1399
AccII CGCG 3 cut(s) 342, 1154, 1156
AciI CCGC 8 cut(s) 160, 342, 467, 678, 684, 812, 875, 978
AclWI GGATC 5 cut(s) 646, 775, 780, 986, 999
AcsI RAATTY 4 cut(s) 43, 53, 726, 1364
AcyI GRCGYC 1 cut(s) 1391
AdeI CACNNNGTG 1 cut(s) 886
AfaI GTAC 7 cut(s) 407, 440, 611, 983, 1008, 1277, 1449
AfiI CCNNNNNNNGG 1 cut(s) 318
AflIII ACRYGT 1 cut(s) 423
AgsI TTSAA 6 cut(s) 205, 436, 1235, 1333, 1348, 1369
AjiI CACGTC 2 cut(s) 426, 1137
AjnI CCWGG 1 cut(s) 783
AluBI AGCT 8 cut(s) 498, 505, 718, 826, 1108, 1358, 1436, 1467
AluI AGCT 8 cut(s) 498, 505, 718, 826, 1108, 1358, 1436, 1467
Alw21I GWGCWC 1 cut(s) 828
Alw26I GTCTC 4 cut(s) 386, 418, 1247, 1357
AlwI GGATC 5 cut(s) 646, 775, 780, 986, 999
AoxI GGCC 1 cut(s) 997
ApeKI GCWGC 3 cut(s) 710, 738, 1467
ApoI RAATTY 4 cut(s) 43, 53, 726, 1364
AspLEI GCGC 4 cut(s) 880, 1156, 1158, 1393
AspS9I GGNCC 3 cut(s) 997, 1002, 1192
AsuC2I CCSGG 1 cut(s) 996
AsuHPI GGTGA 4 cut(s) 187, 827, 1105, 1262
AsuNHI GCTAGC 1 cut(s) 871
AvaII GGWCC 2 cut(s) 1002, 1192
BamHI GGATCC 1 cut(s) 991
BanI GGYRCC 1 cut(s) 1390
BanII GRGCYC 1 cut(s) 828
BauI CACGAG 1 cut(s) 442
Bbv12I GWGCWC 1 cut(s) 828
BbvI GCAGC 3 cut(s) 697, 725, 1454
BccI CCATC 3 cut(s) 134, 376, 469
BceAI ACGGC 6 cut(s) 229, 691, 751, 781, 1113, 1131
BciT130I CCWGG 1 cut(s) 785
BciVI GTATCC 1 cut(s) 1092
BcnI CCSGG 1 cut(s) 996
BcoDI GTCTC 4 cut(s) 386, 418, 1247, 1357
BfaI CTAG 2 cut(s) 506, 872
BfoI RGCGCY 1 cut(s) 1394
BfuI GTATCC 1 cut(s) 1092
BisI GCNGC 5 cut(s) 711, 739, 812, 876, 1468
BlpI GCTNAGC 1 cut(s) 714
BlsI GCNGC 5 cut(s) 712, 740, 813, 877, 1469
BmcAI AGTACT 1 cut(s) 440
Bme1390I CCNGG 2 cut(s) 785, 996
Bme18I GGWCC 2 cut(s) 1002, 1192
BmgBI CACGTC 2 cut(s) 426, 1137
BmgT120I GGNCC 3 cut(s) 997, 1002, 1192
BmiI GGNNCC 4 cut(s) 277, 993, 1194, 1392
BmrFI CCNGG 2 cut(s) 785, 996
BmsI GCATC 3 cut(s) 225, 276, 1314
BmtI GCTAGC 1 cut(s) 875
BplI GAGNNNNNCTC 1 cut(s) 1474
BpmI CTGGAG 1 cut(s) 410
Bpu1102I GCTNAGC 1 cut(s) 714
BpuEI CTTGAG 2 cut(s) 814, 1051
BpuMI CCSGG 1 cut(s) 996
BsaAI YACGTR 2 cut(s) 922, 1397
BsaBI GATNNNNATC 1 cut(s) 600
BsaHI GRCGYC 1 cut(s) 1391
BsaI GGTCTC 2 cut(s) 386, 1247
BsaJI CCNNGG 4 cut(s) 117, 279, 417, 784
BsaXI ACNNNNNCTCC 4 cut(s) 264, 294, 398, 428
Bsc4I CCNNNNNNNGG 1 cut(s) 318
Bse3DI GCAATG 1 cut(s) 1477
Bse8I GATNNNNATC 1 cut(s) 600
BseBI CCWGG 1 cut(s) 785
BseDI CCNNGG 4 cut(s) 117, 279, 417, 784
BseGI GGATG 3 cut(s) 368, 480, 1305
BseJI GATNNNNATC 1 cut(s) 600
BseLI CCNNNNNNNGG 1 cut(s) 318
BseMI GCAATG 1 cut(s) 1477
BseMII CTCAG 3 cut(s) 234, 705, 1368
BsePI GCGCGC 1 cut(s) 1154
BseRI GAGGAG 1 cut(s) 1482
BseXI GCAGC 3 cut(s) 697, 725, 1454
BsgI GTGCAG 1 cut(s) 1094
Bsh1236I CGCG 3 cut(s) 342, 1154, 1156
BshFI GGCC 1 cut(s) 999
BshNI GGYRCC 1 cut(s) 1390
BsiHKAI GWGCWC 1 cut(s) 828
BsiSI CCGG 2 cut(s) 995, 1000
BslFI GGGAC 3 cut(s) 305, 554, 1163
BslI CCNNNNNNNGG 1 cut(s) 318
BsmAI GTCTC 4 cut(s) 386, 418, 1247, 1357
BsmFI GGGAC 3 cut(s) 305, 554, 1163
BsnI GGCC 1 cut(s) 999
Bso31I GGTCTC 2 cut(s) 386, 1247
Bsp1286I GDGCHC 1 cut(s) 828
Bsp1407I TGTACA 1 cut(s) 1447
Bsp1720I GCTNAGC 1 cut(s) 714
BspACI CCGC 8 cut(s) 160, 342, 467, 678, 684, 812, 875, 978
BspANI GGCC 1 cut(s) 999
BspCNI CTCAG 3 cut(s) 233, 706, 1367
BspFNI CGCG 3 cut(s) 342, 1154, 1156
BspLI GGNNCC 4 cut(s) 277, 993, 1194, 1392
BspOI GCTAGC 1 cut(s) 875
BspPI GGATC 5 cut(s) 646, 775, 780, 986, 999
BspT107I GGYRCC 1 cut(s) 1390
BspTNI GGTCTC 2 cut(s) 386, 1247
BsrBI CCGCTC 1 cut(s) 162
BsrDI GCAATG 1 cut(s) 1477
BsrGI TGTACA 1 cut(s) 1447
BssECI CCNNGG 4 cut(s) 117, 279, 417, 784
BssHII GCGCGC 1 cut(s) 1154
BssNI GRCGYC 1 cut(s) 1391
BssSI CACGAG 1 cut(s) 442
Bst2BI CACGAG 1 cut(s) 442
Bst2UI CCWGG 1 cut(s) 785
Bst4CI ACNGT 7 cut(s) 230, 405, 432, 462, 553, 1006, 1072
BstACI GRCGYC 1 cut(s) 1391
BstAUI TGTACA 1 cut(s) 1447
BstBAI YACGTR 2 cut(s) 922, 1397
BstC8I GCNNGC 2 cut(s) 873, 1156
BstDEI CTNAG 5 cut(s) 220, 571, 714, 1101, 1354
BstDSI CCRYGG 2 cut(s) 117, 279
BstF5I GGATG 3 cut(s) 368, 480, 1305
BstFNI CGCG 3 cut(s) 342, 1154, 1156
BstH2I RGCGCY 1 cut(s) 1394
BstHHI GCGC 4 cut(s) 880, 1156, 1158, 1393
BstMAI GTCTC 4 cut(s) 386, 418, 1247, 1357
BstMWI GCNNNNNNNGC 3 cut(s) 273, 877, 1473
BstNI CCWGG 1 cut(s) 785
BstSCI CCNGG 2 cut(s) 783, 994
BstUI CGCG 3 cut(s) 342, 1154, 1156
BstV1I GCAGC 3 cut(s) 697, 725, 1454
BstX2I RGATCY 2 cut(s) 780, 991
BstXI CCANNNNNNTGG 1 cut(s) 1380
BstYI RGATCY 2 cut(s) 780, 991
BsuI GTATCC 1 cut(s) 1092
BsuRI GGCC 1 cut(s) 999
BtgI CCRYGG 2 cut(s) 117, 279
BtrI CACGTC 2 cut(s) 426, 1137
BtsCI GGATG 3 cut(s) 368, 480, 1305
BtsIMutI CAGTG 2 cut(s) 585, 1077
Cac8I GCNNGC 2 cut(s) 873, 1156
CfoI GCGC 4 cut(s) 880, 1156, 1158, 1393
Cfr13I GGNCC 3 cut(s) 997, 1002, 1192
CpoI CGGWCCG 1 cut(s) 1002
CseI GACGC 2 cut(s) 312, 1160
Csp6I GTAC 7 cut(s) 406, 439, 610, 982, 1007, 1276, 1448
CspI CGGWCCG 1 cut(s) 1002
CviAII CATG 2 cut(s) 91, 1325
CviQI GTAC 7 cut(s) 406, 439, 610, 982, 1007, 1276, 1448
DdeI CTNAG 5 cut(s) 220, 571, 714, 1101, 1354
DinI GGCGCC 1 cut(s) 1392
DraI TTTAAA 1 cut(s) 42
DraIII CACNNNGTG 1 cut(s) 886
Ecl136II GAGCTC 1 cut(s) 826
Eco24I GRGCYC 1 cut(s) 828
Eco31I GGTCTC 2 cut(s) 386, 1247
Eco47I GGWCC 2 cut(s) 1002, 1192
Eco53kI GAGCTC 1 cut(s) 826
EcoICRI GAGCTC 1 cut(s) 826
EcoRII CCWGG 1 cut(s) 783
EcoT38I GRGCYC 1 cut(s) 828
EgeI GGCGCC 1 cut(s) 1392
EheI GGCGCC 1 cut(s) 1392
FaeI CATG 2 cut(s) 94, 1328
FaqI GGGAC 3 cut(s) 305, 554, 1163
FatI CATG 2 cut(s) 90, 1324
FauI CCCGC 3 cut(s) 335, 677, 971
FblI GTMKAC 1 cut(s) 1399
Fnu4HI GCNGC 5 cut(s) 711, 739, 812, 876, 1468
FokI GGATG 3 cut(s) 355, 487, 1292
FriOI GRGCYC 1 cut(s) 828
Fsp4HI GCNGC 5 cut(s) 711, 739, 812, 876, 1468
FspBI CTAG 2 cut(s) 506, 872
GlaI GCGC 4 cut(s) 879, 1155, 1157, 1392
GluI GCNGC 5 cut(s) 711, 739, 812, 876, 1468
GsuI CTGGAG 1 cut(s) 410
HaeII RGCGCY 1 cut(s) 1394
HaeIII GGCC 1 cut(s) 999
HapII CCGG 2 cut(s) 995, 1000
HgaI GACGC 2 cut(s) 312, 1160
HhaI GCGC 4 cut(s) 880, 1156, 1158, 1393
Hin1I GRCGYC 1 cut(s) 1391
Hin1II CATG 2 cut(s) 94, 1328
Hin6I GCGC 4 cut(s) 878, 1154, 1156, 1391
HinP1I GCGC 4 cut(s) 878, 1154, 1156, 1391
HinfI GANTC 6 cut(s) 284, 411, 483, 926, 956, 1489
HpaII CCGG 2 cut(s) 995, 1000
HphI GGTGA 4 cut(s) 187, 827, 1105, 1262
Hpy166II GTNNAC 2 cut(s) 1164, 1400
Hpy188I TCNGA 8 cut(s) 272, 418, 474, 606, 631, 772, 1192, 1310
Hpy188III TCNNGA 5 cut(s) 29, 49, 233, 487, 964
Hpy8I GTNNAC 2 cut(s) 1164, 1400
Hpy99I CGWCG 2 cut(s) 230, 306
HpyAV CCTTC 4 cut(s) 35, 160, 407, 1424
HpyCH4III ACNGT 7 cut(s) 230, 405, 432, 462, 553, 1006, 1072
HpyCH4IV ACGT 9 cut(s) 189, 333, 383, 425, 921, 1127, 1136, 1166, 1396
HpyCH4V TGCA 7 cut(s) 11, 741, 1075, 1123, 1305, 1410, 1470
HpyF10VI GCNNNNNNNGC 3 cut(s) 273, 877, 1473
HpyF3I CTNAG 5 cut(s) 220, 571, 714, 1101, 1354
HpySE526I ACGT 9 cut(s) 189, 333, 383, 425, 921, 1127, 1136, 1166, 1396
Hsp92I GRCGYC 1 cut(s) 1391
Hsp92II CATG 2 cut(s) 94, 1328
HspAI GCGC 4 cut(s) 878, 1154, 1156, 1391
KasI GGCGCC 1 cut(s) 1390
LmnI GCTCC 6 cut(s) 119, 167, 281, 640, 1363, 1433
Lsp1109I GCAGC 3 cut(s) 697, 725, 1454
LweI GCATC 3 cut(s) 225, 276, 1314
MaeI CTAG 2 cut(s) 506, 872
MaeII ACGT 9 cut(s) 189, 333, 383, 425, 921, 1127, 1136, 1166, 1396
MbiI CCGCTC 1 cut(s) 162
MboII GAAGA 2 cut(s) 130, 1153
MflI RGATCY 2 cut(s) 780, 991
MhlI GDGCHC 1 cut(s) 828
MluCI AATT 8 cut(s) 43, 53, 169, 726, 1039, 1144, 1364, 1458
Mly113I GGCGCC 1 cut(s) 1391
MlyI GAGTC 5 cut(s) 293, 420, 935, 950, 1483
MnlI CCTC 8 cut(s) 89, 186, 266, 412, 516, 1026, 1266, 1333
MseI TTAA 3 cut(s) 41, 723, 1170
MspI CCGG 2 cut(s) 995, 1000
MspR9I CCNGG 2 cut(s) 785, 996
MvaI CCWGG 1 cut(s) 785
MvnI CGCG 3 cut(s) 342, 1154, 1156
MwoI GCNNNNNNNGC 3 cut(s) 273, 877, 1473
NarI GGCGCC 1 cut(s) 1391
NciI CCSGG 1 cut(s) 996
NheI GCTAGC 1 cut(s) 871
NlaIII CATG 2 cut(s) 94, 1328
NlaIV GGNNCC 4 cut(s) 277, 993, 1194, 1392
NmeAIII GCCGAG 1 cut(s) 807
NmuCI GTSAC 9 cut(s) 193, 230, 334, 426, 886, 900, 1093, 1313, 1486
PauI GCGCGC 1 cut(s) 1154
PcsI WCGNNNNNNNCGW 3 cut(s) 195, 276, 1133
PfeI GAWTC 1 cut(s) 483
PflFI GACNNNGTC 1 cut(s) 959
PkrI GCNGC 5 cut(s) 712, 740, 813, 877, 1469
PleI GAGTC 5 cut(s) 292, 419, 934, 950, 1483
PluTI GGCGCC 1 cut(s) 1394
PpsI GAGTC 5 cut(s) 292, 419, 934, 950, 1483
Ppu21I YACGTR 2 cut(s) 922, 1397
Psp124BI GAGCTC 1 cut(s) 828
Psp6I CCWGG 1 cut(s) 783
PspGI CCWGG 1 cut(s) 783
PspN4I GGNNCC 4 cut(s) 277, 993, 1194, 1392
PspPI GGNCC 3 cut(s) 997, 1002, 1192
PsuI RGATCY 2 cut(s) 780, 991
PsyI GACNNNGTC 1 cut(s) 959
PteI GCGCGC 1 cut(s) 1154
RsaI GTAC 7 cut(s) 407, 440, 611, 983, 1008, 1277, 1449
RsaNI GTAC 7 cut(s) 406, 439, 610, 982, 1007, 1276, 1448
Rsr2I CGGWCCG 1 cut(s) 1002
RsrII CGGWCCG 1 cut(s) 1002
SacI GAGCTC 1 cut(s) 828
SaqAI TTAA 3 cut(s) 41, 723, 1170
SatI GCNGC 5 cut(s) 711, 739, 812, 876, 1468
Sau96I GGNCC 3 cut(s) 997, 1002, 1192
ScaI AGTACT 1 cut(s) 440
SchI GAGTC 5 cut(s) 293, 420, 935, 950, 1483
ScrFI CCNGG 2 cut(s) 785, 996
SduI GDGCHC 1 cut(s) 828
SfaNI GCATC 3 cut(s) 225, 276, 1314
SfoI GGCGCC 1 cut(s) 1392
SinI GGWCC 2 cut(s) 1002, 1192
SmlI CTYRAG 2 cut(s) 793, 1030
SmoI CTYRAG 2 cut(s) 793, 1030
Sse9I AATT 8 cut(s) 43, 53, 169, 726, 1039, 1144, 1364, 1458
SsiI CCGC 8 cut(s) 160, 342, 467, 678, 684, 812, 875, 978
SspDI GGCGCC 1 cut(s) 1390
SspI AATATT 2 cut(s) 247, 1282
SspMI CTAG 2 cut(s) 506, 872
SstI GAGCTC 1 cut(s) 828
StyD4I CCNGG 2 cut(s) 783, 994
TaaI ACNGT 7 cut(s) 230, 405, 432, 462, 553, 1006, 1072
TaiI ACGT 9 cut(s) 192, 336, 386, 428, 924, 1130, 1139, 1169, 1399
TaqI TCGA 2 cut(s) 501, 929
TaqII GACCGA 1 cut(s) 949
TasI AATT 8 cut(s) 43, 53, 169, 726, 1039, 1144, 1364, 1458
TatI WGTACW 4 cut(s) 405, 438, 609, 1447
TauI GCSGC 2 cut(s) 814, 878
TfiI GAWTC 1 cut(s) 483
Tru1I TTAA 3 cut(s) 41, 723, 1170
Tru9I TTAA 3 cut(s) 41, 723, 1170
TscAI CASTG 2 cut(s) 585, 1077
TseFI GTSAC 9 cut(s) 193, 230, 334, 426, 886, 900, 1093, 1313, 1486
TseI GCWGC 3 cut(s) 710, 738, 1467
Tsp45I GTSAC 9 cut(s) 193, 230, 334, 426, 886, 900, 1093, 1313, 1486
TspDTI ATGAA 1 cut(s) 107
TspGWI ACGGA 4 cut(s) 106, 268, 438, 1074
TspRI CASTG 2 cut(s) 585, 1077
Tth111I GACNNNGTC 1 cut(s) 959
VpaK11BI GGWCC 2 cut(s) 1002, 1192
XapI RAATTY 4 cut(s) 43, 53, 726, 1364
XcmI CCANNNNNNNNNTGG 1 cut(s) 381
XmiI GTMKAC 1 cut(s) 1399
XspI CTAG 2 cut(s) 506, 872
ZrmI AGTACT 1 cut(s) 440
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.