Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0006722

Physical Location & Seq

Genomic Coordinates Reverse (-)

15172293 .. 15174185

Gene Structure 1893 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g12190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1428 bp

ATGTCTTGTGCAAGATCAAAAACCCTTCACGACCACGCCTTAAATTTTTGGAAATTCCTAATCAGAGCCATTGATGTCTTATCCCTTGCCATGAAAACAACCCTAGCACTTTGCTCCGTGGCTTCCATCTCTCTCATCCTCTACTTTGCCGTCTCAAACCGCTCCCATAATTTCCCTCCACACCCCAACGTAGTCATCAACCTCAATCAAAACGGCATCTCCGCCGACGGTCACGAAAAGACAAATATTTCACACGTTCTGTTTGGCATCGGAGGCTCCGTGGAGACGTGGGACAAACGCCGACACTACACCGAGTTGTGGTGGAAGCCTAACGTCACTCGCGGGTTCGTTTGGCTGGACCAGATACCATCCCCATTCATGACGTGGGTGGAGACCCTTCCACAGTACAAAGTCTCCGGGAACACGTCACGGTTCAAGTACTCGTGCCCGTATGGTTCACGGTCGGCGGTTCGGTTGGCGAGAATCGTGAAAGAGAGCTTCGAGCTAGGTTTAGAAAATGTGAGGTGGTTTGTTATGGGGGACGATGATACGGTCTATTTCCCCGATAACTTACTTTCAGTGTTAGTGAAATACGATCACAATCAGATGTACTATATTGGCGGGAACTCTGAGAGTGTGGAGCAAGATGAGATCCACTCATACACTATGGCTTACGGCGGTGGCGGGATTGCCATTAGTTACCCGTTGGCTGCGGAGCTTGTTAAAATTTTGGACGGCTGCATTGATCGATATGATAAACTCTACGGCTCGGATCAAAAGATCCAGGGTTGCTTGAGCGAGATTGGAGTACCGCTAACAAAAGAGCTCGGCTTTCACCAACTGGATATACGGGGCAACCCGTATGGTTTGCTAGCGGCACACCCTGTGACCCCGTTGGTGTCACTCCACCATTTGGACTATGTGGAGTCGATATTTCCAAACCTGAACCCGATTGACTCGGTCAAGAAGTTGGTTAGCGGGTACAAAGTGGATCCGGGACGGACCGTACAACATAGTTTTTGTTACGACTTGAGGCGTAATTGGTCTGTTTCGGTGTCTTGGGGCTACACGGTGCAGTTGTATCCGTTTTTGGTGACGGCTAAGAAGCTGGAAACGGCGTTGCAGACGTTTTGGACGTGGAAGAATTGGGACACGCGCCTGTTCACGTTTAATACCCAACCCGTCAGTTCGGACCCGTGTGAGAGATCGGTTGTGTATATGTTAGATCTGGTTGAAAATGGTGGTGGGGGTGAGACCCTGACTACTTACAAGAGGTACGGGGAAAATGATTGCATTCGAAGTGACTACACTCATGCTTTGGAAGTTGAGGTTTTCAATGTCTCGGCTCCCAAATTCAACCCAGACTTGTGGAATAAGGCACCACGTAGACAATGTTGCGAGATCGATCAATGGCACAGAAGGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF604

Protein Analysis

476

Amino Acids

54.21

Weight (kDa)

6.76

Isoelectric Point (pI)

39.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fringe	PF02434	170 - 280	1.8e-11	Fringe-like
DUF604	PF04646	215 - 466	4.4e-103	Protein of unknown function, DUF604

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006722)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37730
fragaria_vesca	FvH4_6g13140
malus_domestica	MD04G1134300.v1.1 MD04G1134500.v1.1 MD12G1148000.v1.1
prunus_persica	Prupe.6G260300_v2.0.a1 Prupe.6G260400_v2.0.a1
pyrus_communis	pycom04g12190 pycom04g12200
rosa_chinensis	RchiOBHm_Chr3g0465521 RchiOBHm_Chr3g0465641
rosa_laevigata	RLG00000024632 RLG00000024636
rosa_multiflora	Rmu_co8472167.1_g000001 Rmu_sc0000550.1_g000021
rosa_roxburghii	Rroxscaffold_6G00414960 Rroxscaffold_6G00414990
rosa_rugosa	Rorug03G0077200 Rorug03G0077700
rosa_samantha	Rh3BG143400 Rh3CG144400 Rh3DG143700 Rh3DG144700
rosa_wichuraiana	Rw3G011610 Rw3G011640 Rw3G011680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1378
AccB7I	CCANNNNNTGG	1 cut(s)	913
AccBSI	CCGCTC	1 cut(s)	162
AccI	GTMKAC	1 cut(s)	1387
AccII	CGCG	2 cut(s)	342, 1156
AclWI	GGATC	5 cut(s)	646, 775, 780, 986, 999
AcsI	RAATTY	4 cut(s)	43, 53, 726, 1352
AdeI	CACNNNGTG	1 cut(s)	886
AfaI	GTAC	7 cut(s)	407, 440, 611, 810, 983, 1008, 1277
AfiI	CCNNNNNNNGG	2 cut(s)	318, 913
AflIII	ACRYGT	2 cut(s)	253, 423
AgsI	TTSAA	4 cut(s)	436, 1235, 1336, 1357
AjiI	CACGTC	4 cut(s)	288, 384, 426, 1137
AjnI	CCWGG	1 cut(s)	783
AluBI	AGCT	6 cut(s)	498, 505, 718, 826, 1108, 1425
AluI	AGCT	6 cut(s)	498, 505, 718, 826, 1108, 1425
Alw21I	GWGCWC	1 cut(s)	828
Alw26I	GTCTC	6 cut(s)	157, 278, 386, 418, 1247, 1345
AlwI	GGATC	5 cut(s)	646, 775, 780, 986, 999
ApeKI	GCWGC	2 cut(s)	710, 738
ApoI	RAATTY	4 cut(s)	43, 53, 726, 1352
AspLEI	GCGC	1 cut(s)	1158
AspS9I	GGNCC	3 cut(s)	358, 1002, 1192
AsuC2I	CCSGG	2 cut(s)	418, 996
AsuHPI	GGTGA	3 cut(s)	827, 1105, 1262
AsuII	TTCGAA	1 cut(s)	1297
AsuNHI	GCTAGC	1 cut(s)	871
AvaII	GGWCC	3 cut(s)	358, 1002, 1192
BaeGI	GKGCMC	1 cut(s)	449
BamHI	GGATCC	1 cut(s)	991
BanI	GGYRCC	1 cut(s)	1378
BanII	GRGCYC	1 cut(s)	828
BauI	CACGAG	1 cut(s)	442
Bbv12I	GWGCWC	1 cut(s)	828
BbvI	GCAGC	2 cut(s)	697, 725
BccI	CCATC	2 cut(s)	134, 376
BceAI	ACGGC	7 cut(s)	134, 229, 691, 751, 781, 1113, 1131
BciT130I	CCWGG	1 cut(s)	785
BciVI	GTATCC	1 cut(s)	1092
BcnI	CCSGG	2 cut(s)	418, 996
BcoDI	GTCTC	6 cut(s)	157, 278, 386, 418, 1247, 1345
BfaI	CTAG	3 cut(s)	104, 506, 872
BfuI	GTATCC	1 cut(s)	1092
BglII	AGATCT	1 cut(s)	1225
BisI	GCNGC	3 cut(s)	711, 739, 876
BlsI	GCNGC	3 cut(s)	712, 740, 877
BmcAI	AGTACT	1 cut(s)	440
Bme1390I	CCNGG	3 cut(s)	418, 785, 996
Bme18I	GGWCC	3 cut(s)	358, 1002, 1192
BmgBI	CACGTC	4 cut(s)	288, 384, 426, 1137
BmgT120I	GGNCC	3 cut(s)	358, 1002, 1192
BmiI	GGNNCC	5 cut(s)	277, 993, 1194, 1347, 1380
BmrFI	CCNGG	3 cut(s)	418, 785, 996
BmsI	GCATC	2 cut(s)	225, 276
BmtI	GCTAGC	1 cut(s)	875
BplI	GAGNNNNNCTC	2 cut(s)	641, 673
Bpu14I	TTCGAA	1 cut(s)	1297
BpuEI	CTTGAG	2 cut(s)	814, 1051
BpuMI	CCSGG	2 cut(s)	418, 996
Bsa29I	ATCGAT	2 cut(s)	748, 1404
BsaAI	YACGTR	1 cut(s)	1385
BsaBI	GATNNNNATC	1 cut(s)	600
BsaI	GGTCTC	2 cut(s)	386, 1247
BsaJI	CCNNGG	3 cut(s)	117, 279, 784
BsaXI	ACNNNNNCTCC	6 cut(s)	203, 233, 264, 294, 398, 428
Bsc4I	CCNNNNNNNGG	2 cut(s)	318, 913
Bse1I	ACTGG	1 cut(s)	846
Bse8I	GATNNNNATC	1 cut(s)	600
BseBI	CCWGG	1 cut(s)	785
BseCI	ATCGAT	2 cut(s)	748, 1404
BseDI	CCNNGG	3 cut(s)	117, 279, 784
BseGI	GGATG	2 cut(s)	135, 368
BseJI	GATNNNNATC	1 cut(s)	600
BseLI	CCNNNNNNNGG	2 cut(s)	318, 913
BseMII	CTCAG	1 cut(s)	621
BseNI	ACTGG	1 cut(s)	846
BseSI	GKGCMC	1 cut(s)	449
BseXI	GCAGC	2 cut(s)	697, 725
BsgI	GTGCAG	1 cut(s)	1094
Bsh1236I	CGCG	2 cut(s)	342, 1156
Bsh1285I	CGRYCG	1 cut(s)	464
BshNI	GGYRCC	1 cut(s)	1378
BshVI	ATCGAT	2 cut(s)	748, 1404
BsiEI	CGRYCG	1 cut(s)	464
BsiHKAI	GWGCWC	1 cut(s)	828
BsiSI	CCGG	2 cut(s)	417, 995
BslFI	GGGAC	4 cut(s)	305, 554, 1011, 1163
BslI	CCNNNNNNNGG	2 cut(s)	318, 913
BsmAI	GTCTC	6 cut(s)	157, 278, 386, 418, 1247, 1345
BsmBI	CGTCTC	2 cut(s)	157, 278
BsmFI	GGGAC	4 cut(s)	305, 554, 1011, 1163
BsmI	GAATGC	1 cut(s)	1293
Bso31I	GGTCTC	2 cut(s)	386, 1247
Bsp119I	TTCGAA	1 cut(s)	1297
Bsp1286I	GDGCHC	2 cut(s)	449, 828
BspCNI	CTCAG	1 cut(s)	622
BspDI	ATCGAT	2 cut(s)	748, 1404
BspFNI	CGCG	2 cut(s)	342, 1156
BspHI	TCATGA	1 cut(s)	378
BspLI	GGNNCC	5 cut(s)	277, 993, 1194, 1347, 1380
BspOI	GCTAGC	1 cut(s)	875
BspPI	GGATC	5 cut(s)	646, 775, 780, 986, 999
BspT104I	TTCGAA	1 cut(s)	1297
BspT107I	GGYRCC	1 cut(s)	1378
BspTNI	GGTCTC	2 cut(s)	386, 1247
BsrBI	CCGCTC	1 cut(s)	162
BsrI	ACTGG	1 cut(s)	846
BssECI	CCNNGG	3 cut(s)	117, 279, 784
BssSI	CACGAG	1 cut(s)	442
Bst2BI	CACGAG	1 cut(s)	442
Bst2UI	CCWGG	1 cut(s)	785
Bst4CI	ACNGT	7 cut(s)	230, 405, 432, 462, 553, 1006, 1072
BstBAI	YACGTR	1 cut(s)	1385
BstBI	TTCGAA	1 cut(s)	1297
BstC8I	GCNNGC	1 cut(s)	873
BstDEI	CTNAG	2 cut(s)	630, 1101
BstDSI	CCRYGG	2 cut(s)	117, 279
BstF5I	GGATG	2 cut(s)	135, 368
BstFNI	CGCG	2 cut(s)	342, 1156
BstHHI	GCGC	1 cut(s)	1158
BstMAI	GTCTC	6 cut(s)	157, 278, 386, 418, 1247, 1345
BstMCI	CGRYCG	1 cut(s)	464
BstMWI	GCNNNNNNNGC	1 cut(s)	273
BstNI	CCWGG	1 cut(s)	785
BstSCI	CCNGG	3 cut(s)	416, 783, 994
BstSLI	GKGCMC	1 cut(s)	449
BstUI	CGCG	2 cut(s)	342, 1156
BstV1I	GCAGC	2 cut(s)	697, 725
BstX2I	RGATCY	4 cut(s)	651, 780, 991, 1225
BstXI	CCANNNNNNTGG	1 cut(s)	1368
BstYI	RGATCY	4 cut(s)	651, 780, 991, 1225
Bsu15I	ATCGAT	2 cut(s)	748, 1404
BsuI	GTATCC	1 cut(s)	1092
BsuTUI	ATCGAT	2 cut(s)	748, 1404
BtgI	CCRYGG	2 cut(s)	117, 279
BtrI	CACGTC	4 cut(s)	288, 384, 426, 1137
BtsCI	GGATG	2 cut(s)	135, 368
BtsIMutI	CAGTG	1 cut(s)	585
Cac8I	GCNNGC	1 cut(s)	873
CciI	TCATGA	1 cut(s)	378
CfoI	GCGC	1 cut(s)	1158
Cfr13I	GGNCC	3 cut(s)	358, 1002, 1192
ClaI	ATCGAT	2 cut(s)	748, 1404
CpoI	CGGWCCG	1 cut(s)	1002
Csp6I	GTAC	7 cut(s)	406, 439, 610, 809, 982, 1007, 1276
CspI	CGGWCCG	1 cut(s)	1002
CviAII	CATG	3 cut(s)	91, 379, 1313
CviQI	GTAC	7 cut(s)	406, 439, 610, 809, 982, 1007, 1276
DdeI	CTNAG	2 cut(s)	630, 1101
DraIII	CACNNNGTG	1 cut(s)	886
EciI	GGCGGA	1 cut(s)	211
Ecl136II	GAGCTC	1 cut(s)	826
Eco24I	GRGCYC	1 cut(s)	828
Eco31I	GGTCTC	2 cut(s)	386, 1247
Eco47I	GGWCC	3 cut(s)	358, 1002, 1192
Eco53kI	GAGCTC	1 cut(s)	826
EcoICRI	GAGCTC	1 cut(s)	826
EcoRII	CCWGG	1 cut(s)	783
EcoT38I	GRGCYC	1 cut(s)	828
Esp3I	CGTCTC	2 cut(s)	157, 278
FaeI	CATG	3 cut(s)	94, 382, 1316
FaqI	GGGAC	4 cut(s)	305, 554, 1011, 1163
FatI	CATG	3 cut(s)	90, 378, 1312
FauI	CCCGC	4 cut(s)	335, 614, 677, 971
FblI	GTMKAC	1 cut(s)	1387
Fnu4HI	GCNGC	3 cut(s)	711, 739, 876
FokI	GGATG	2 cut(s)	122, 355
FriOI	GRGCYC	1 cut(s)	828
Fsp4HI	GCNGC	3 cut(s)	711, 739, 876
FspBI	CTAG	3 cut(s)	104, 506, 872
GlaI	GCGC	1 cut(s)	1157
GluI	GCNGC	3 cut(s)	711, 739, 876
HapII	CCGG	2 cut(s)	417, 995
HhaI	GCGC	1 cut(s)	1158
Hin1II	CATG	3 cut(s)	94, 382, 1316
Hin6I	GCGC	1 cut(s)	1156
HinP1I	GCGC	1 cut(s)	1156
HinfI	GANTC	3 cut(s)	483, 926, 956
HpaII	CCGG	2 cut(s)	417, 995
HphI	GGTGA	3 cut(s)	827, 1105, 1262
Hpy166II	GTNNAC	3 cut(s)	458, 1164, 1388
Hpy188I	TCNGA	6 cut(s)	65, 272, 606, 631, 772, 1192
Hpy188III	TCNNGA	5 cut(s)	29, 233, 379, 487, 964
Hpy8I	GTNNAC	3 cut(s)	458, 1164, 1388
Hpy99I	CGWCG	1 cut(s)	230
HpyAV	CCTTC	3 cut(s)	35, 407, 1413
HpyCH4III	ACNGT	7 cut(s)	230, 405, 432, 462, 553, 1006, 1072
HpyCH4V	TGCA	5 cut(s)	11, 741, 1075, 1123, 1293
HpyF10VI	GCNNNNNNNGC	1 cut(s)	273
HpyF3I	CTNAG	2 cut(s)	630, 1101
Hsp92II	CATG	3 cut(s)	94, 382, 1316
HspAI	GCGC	1 cut(s)	1156
LmnI	GCTCC	7 cut(s)	119, 167, 281, 640, 715, 1351, 1422
Lsp1109I	GCAGC	2 cut(s)	697, 725
LweI	GCATC	2 cut(s)	225, 276
MaeI	CTAG	3 cut(s)	104, 506, 872
MaeIII	GTNAC	9 cut(s)	230, 334, 426, 698, 886, 900, 1022, 1093, 1301
MbiI	CCGCTC	1 cut(s)	162
MboII	GAAGA	1 cut(s)	1153
MflI	RGATCY	4 cut(s)	651, 780, 991, 1225
MhlI	GDGCHC	2 cut(s)	449, 828
MluCI	AATT	7 cut(s)	43, 53, 169, 726, 1039, 1144, 1352
MlyI	GAGTC	2 cut(s)	935, 950
MnlI	CCTC	8 cut(s)	149, 186, 212, 266, 516, 1026, 1266, 1321
MseI	TTAA	3 cut(s)	41, 723, 1170
MspI	CCGG	2 cut(s)	417, 995
MspR9I	CCNGG	3 cut(s)	418, 785, 996
Mva1269I	GAATGC	1 cut(s)	1293
MvaI	CCWGG	1 cut(s)	785
MvnI	CGCG	2 cut(s)	342, 1156
MwoI	GCNNNNNNNGC	1 cut(s)	273
NciI	CCSGG	2 cut(s)	418, 996
NheI	GCTAGC	1 cut(s)	871
NlaIII	CATG	3 cut(s)	94, 382, 1316
NlaIV	GGNNCC	5 cut(s)	277, 993, 1194, 1347, 1380
NmeAIII	GCCGAG	2 cut(s)	807, 1322
NmuCI	GTSAC	7 cut(s)	230, 334, 426, 886, 900, 1093, 1301
NspV	TTCGAA	1 cut(s)	1297
PagI	TCATGA	1 cut(s)	378
PcsI	WCGNNNNNNNCGW	2 cut(s)	276, 1133
PctI	GAATGC	1 cut(s)	1293
PfeI	GAWTC	1 cut(s)	483
PflFI	GACNNNGTC	1 cut(s)	959
PflMI	CCANNNNNTGG	1 cut(s)	913
PfoI	TCCNGGA	2 cut(s)	416, 994
PkrI	GCNGC	3 cut(s)	712, 740, 877
PleI	GAGTC	2 cut(s)	934, 950
PpsI	GAGTC	2 cut(s)	934, 950
Ppu21I	YACGTR	1 cut(s)	1385
Psp124BI	GAGCTC	1 cut(s)	828
Psp6I	CCWGG	1 cut(s)	783
PspGI	CCWGG	1 cut(s)	783
PspN4I	GGNNCC	5 cut(s)	277, 993, 1194, 1347, 1380
PspPI	GGNCC	3 cut(s)	358, 1002, 1192
PsuI	RGATCY	4 cut(s)	651, 780, 991, 1225
PsyI	GACNNNGTC	1 cut(s)	959
RsaI	GTAC	7 cut(s)	407, 440, 611, 810, 983, 1008, 1277
RsaNI	GTAC	7 cut(s)	406, 439, 610, 809, 982, 1007, 1276
Rsr2I	CGGWCCG	1 cut(s)	1002
RsrII	CGGWCCG	1 cut(s)	1002
SacI	GAGCTC	1 cut(s)	828
SaqAI	TTAA	3 cut(s)	41, 723, 1170
SatI	GCNGC	3 cut(s)	711, 739, 876
Sau96I	GGNCC	3 cut(s)	358, 1002, 1192
ScaI	AGTACT	1 cut(s)	440
SchI	GAGTC	2 cut(s)	935, 950
ScrFI	CCNGG	3 cut(s)	418, 785, 996
SduI	GDGCHC	2 cut(s)	449, 828
SfaNI	GCATC	2 cut(s)	225, 276
SfuI	TTCGAA	1 cut(s)	1297
SinI	GGWCC	3 cut(s)	358, 1002, 1192
SmlI	CTYRAG	2 cut(s)	793, 1030
SmoI	CTYRAG	2 cut(s)	793, 1030
Sse9I	AATT	7 cut(s)	43, 53, 169, 726, 1039, 1144, 1352
SspI	AATATT	1 cut(s)	247
SspMI	CTAG	3 cut(s)	104, 506, 872
SstI	GAGCTC	1 cut(s)	828
StyD4I	CCNGG	3 cut(s)	416, 783, 994
TaaI	ACNGT	7 cut(s)	230, 405, 432, 462, 553, 1006, 1072
TaqI	TCGA	5 cut(s)	501, 748, 929, 1297, 1404
TaqII	GACCGA	1 cut(s)	949
TasI	AATT	7 cut(s)	43, 53, 169, 726, 1039, 1144, 1352
TatI	WGTACW	3 cut(s)	405, 438, 609
TauI	GCSGC	1 cut(s)	878
TfiI	GAWTC	1 cut(s)	483
Tru1I	TTAA	3 cut(s)	41, 723, 1170
Tru9I	TTAA	3 cut(s)	41, 723, 1170
TscAI	CASTG	1 cut(s)	585
TseFI	GTSAC	7 cut(s)	230, 334, 426, 886, 900, 1093, 1301
TseI	GCWGC	2 cut(s)	710, 738
Tsp45I	GTSAC	7 cut(s)	230, 334, 426, 886, 900, 1093, 1301
TspDTI	ATGAA	2 cut(s)	107, 367
TspGWI	ACGGA	4 cut(s)	106, 268, 1015, 1074
TspRI	CASTG	1 cut(s)	585
Tth111I	GACNNNGTC	1 cut(s)	959
Van91I	CCANNNNNTGG	1 cut(s)	913
VpaK11BI	GGWCC	3 cut(s)	358, 1002, 1192
XapI	RAATTY	4 cut(s)	43, 53, 726, 1352
XcmI	CCANNNNNNNNNTGG	1 cut(s)	381
XmiI	GTMKAC	1 cut(s)	1387
XspI	CTAG	3 cut(s)	104, 506, 872
ZrmI	AGTACT	1 cut(s)	440

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.