Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0017389

Physical Location & Seq

Genomic Coordinates Forward (+)

23324999 .. 23325391

Gene Structure 393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1144300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGCAGCATTGAACCCATCAAACCCACTCGCCGCGGCAGGAAAAAGGGCCCCACTTCATCTTCTTCAGAAGTACCCAAAAAAAACCAAGCGTTCGAAGAAGTCCGAGGTCGTAAATGGCGCTGTCGAACCCGAACCCGAACTTGTATCCGCAATCCAAACCGAATACCCAGAATCGGACCTCGAAGATTACGACGACGGCGTCGATTTCCCGTACGACGACCCACCCCTGGTCTGCTGCTTCGGGGCTGCGCAGAAGGAGTTCGTCCCGACGGTCCGGGTCTCCGACAACCCAATGCACCCGGACATCTACTCGCAGTGGAAGATGCTCCAATGGGACCCGCCGGAGTTCGTGAGGGCGCCAGGTGGGTCGCCCTCCAACGTGGCCATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009295 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0018130 GO:0019438 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0042644 GO:0042646 GO:0042793 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043621 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PfkB SOUL

Protein Analysis

131

Amino Acids

14.35

Weight (kDa)

4.83

Isoelectric Point (pI)

61.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017389)

Species	Orthologous Gene IDs
malus_domestica	MD04G1144300.v1.1
rosa_laevigata	RLG00000002521 RLG00000002525 RLG00000025117 RLG00000034796
rosa_multiflora	Rmu_sc0001114.1_g000009 Rmu_sc0004972.1_g000003 Rmu_sc0017770.1_g000006
rosa_samantha	Rh1AG194700 Rh1DG104300 Rh5BG334200 Rh5DG346300 Rh7AG001000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	200
Acc16I	TGCGCA	1 cut(s)	252
AccB1I	GGYRCC	1 cut(s)	358
AccII	CGCG	1 cut(s)	35
AciI	CCGC	4 cut(s)	33, 35, 150, 341
AcoI	YGGCCR	1 cut(s)	384
AcuI	CTGAAG	1 cut(s)	50
AcyI	GRCGYC	2 cut(s)	201, 359
AfaI	GTAC	2 cut(s)	74, 215
AfiI	CCNNNNNNNGG	2 cut(s)	175, 229
AgsI	TTSAA	1 cut(s)	13
AjnI	CCWGG	2 cut(s)	228, 361
Alw26I	GTCTC	1 cut(s)	286
AoxI	GGCC	2 cut(s)	48, 384
ApaI	GGGCCC	1 cut(s)	52
ApeKI	GCWGC	3 cut(s)	5, 237, 248
Asp700I	GAANNNNTTC	1 cut(s)	260
AspLEI	GCGC	3 cut(s)	122, 253, 361
AspS9I	GGNCC	5 cut(s)	48, 49, 178, 274, 337
AsuC2I	CCSGG	2 cut(s)	278, 302
AsuII	TTCGAA	1 cut(s)	95
AvaII	GGWCC	3 cut(s)	178, 274, 337
BaeGI	GKGCMC	1 cut(s)	52
BalI	TGGCCA	1 cut(s)	386
BanI	GGYRCC	1 cut(s)	358
BanII	GRGCYC	1 cut(s)	52
BbvI	GCAGC	3 cut(s)	17, 224, 235
BccI	CCATC	1 cut(s)	25
BceAI	ACGGC	1 cut(s)	214
BciT130I	CCWGG	2 cut(s)	230, 363
BciVI	GTATCC	1 cut(s)	157
BcnI	CCSGG	2 cut(s)	278, 302
BcoDI	GTCTC	1 cut(s)	286
BfaI	CTAG	1 cut(s)	391
BfoI	RGCGCY	2 cut(s)	123, 362
BfuI	GTATCC	1 cut(s)	157
BisI	GCNGC	5 cut(s)	6, 33, 36, 238, 249
BlsI	GCNGC	5 cut(s)	7, 34, 37, 239, 250
Bme1390I	CCNGG	4 cut(s)	230, 278, 302, 363
Bme18I	GGWCC	3 cut(s)	178, 274, 337
BmgT120I	GGNCC	5 cut(s)	48, 49, 178, 274, 337
BmiI	GGNNCC	5 cut(s)	50, 51, 338, 339, 360
BmrFI	CCNGG	4 cut(s)	230, 278, 302, 363
BmsI	GCATC	1 cut(s)	315
Bpu14I	TTCGAA	1 cut(s)	95
BpuMI	CCSGG	2 cut(s)	278, 302
BsaHI	GRCGYC	2 cut(s)	201, 359
BsaI	GGTCTC	1 cut(s)	286
BsaJI	CCNNGG	3 cut(s)	33, 105, 228
Bsc4I	CCNNNNNNNGG	2 cut(s)	175, 229
BseBI	CCWGG	2 cut(s)	230, 363
BseDI	CCNNGG	3 cut(s)	33, 105, 228
BseLI	CCNNNNNNNGG	2 cut(s)	175, 229
BseSI	GKGCMC	1 cut(s)	52
BseXI	GCAGC	3 cut(s)	17, 224, 235
Bsh1236I	CGCG	1 cut(s)	35
BshFI	GGCC	2 cut(s)	50, 386
BshNI	GGYRCC	1 cut(s)	358
BsiSI	CCGG	3 cut(s)	277, 302, 344
BsiWI	CGTACG	1 cut(s)	213
BslFI	GGGAC	2 cut(s)	251, 350
BslI	CCNNNNNNNGG	2 cut(s)	175, 229
BsmAI	GTCTC	1 cut(s)	286
BsmFI	GGGAC	2 cut(s)	251, 350
BsnI	GGCC	2 cut(s)	50, 386
Bso31I	GGTCTC	1 cut(s)	286
Bsp119I	TTCGAA	1 cut(s)	95
Bsp120I	GGGCCC	1 cut(s)	48
Bsp1286I	GDGCHC	1 cut(s)	52
BspACI	CCGC	4 cut(s)	33, 35, 150, 341
BspANI	GGCC	2 cut(s)	50, 386
BspFNI	CGCG	1 cut(s)	35
BspLI	GGNNCC	5 cut(s)	50, 51, 338, 339, 360
BspT104I	TTCGAA	1 cut(s)	95
BspT107I	GGYRCC	1 cut(s)	358
BspTNI	GGTCTC	1 cut(s)	286
BssECI	CCNNGG	3 cut(s)	33, 105, 228
BssNI	GRCGYC	2 cut(s)	201, 359
Bst2UI	CCWGG	2 cut(s)	230, 363
Bst4CI	ACNGT	1 cut(s)	274
BstACI	GRCGYC	2 cut(s)	201, 359
BstBI	TTCGAA	1 cut(s)	95
BstDSI	CCRYGG	1 cut(s)	33
BstFNI	CGCG	1 cut(s)	35
BstH2I	RGCGCY	2 cut(s)	123, 362
BstHHI	GCGC	3 cut(s)	122, 253, 361
BstMAI	GTCTC	1 cut(s)	286
BstNI	CCWGG	2 cut(s)	230, 363
BstSCI	CCNGG	4 cut(s)	228, 276, 300, 361
BstSLI	GKGCMC	1 cut(s)	52
BstUI	CGCG	1 cut(s)	35
BstV1I	GCAGC	3 cut(s)	17, 224, 235
BsuI	GTATCC	1 cut(s)	157
BsuRI	GGCC	2 cut(s)	50, 386
BtgI	CCRYGG	1 cut(s)	33
BtsI	GCAGTG	1 cut(s)	323
BtsIMutI	CAGTG	1 cut(s)	323
CfoI	GCGC	3 cut(s)	122, 253, 361
Cfr13I	GGNCC	5 cut(s)	48, 49, 178, 274, 337
Cfr42I	CCGCGG	1 cut(s)	36
CpoI	CGGWCCG	1 cut(s)	274
CseI	GACGC	1 cut(s)	190
Csp6I	GTAC	2 cut(s)	73, 214
CspI	CGGWCCG	1 cut(s)	274
CviJI	RGCY	3 cut(s)	50, 248, 386
CviKI_1	RGCY	3 cut(s)	50, 248, 386
CviQI	GTAC	2 cut(s)	73, 214
DinI	GGCGCC	1 cut(s)	360
DrdI	GACNNNNNNGTC	1 cut(s)	200
DseDI	GACNNNNNNGTC	1 cut(s)	200
EaeI	YGGCCR	1 cut(s)	384
Eco24I	GRGCYC	1 cut(s)	52
Eco31I	GGTCTC	1 cut(s)	286
Eco47I	GGWCC	3 cut(s)	178, 274, 337
Eco57I	CTGAAG	1 cut(s)	50
EcoO109I	RGGNCCY	3 cut(s)	48, 49, 337
EcoRII	CCWGG	2 cut(s)	228, 361
EcoT38I	GRGCYC	1 cut(s)	52
EgeI	GGCGCC	1 cut(s)	360
EheI	GGCGCC	1 cut(s)	360
FaqI	GGGAC	2 cut(s)	251, 350
FauI	CCCGC	1 cut(s)	348
Fnu4HI	GCNGC	5 cut(s)	6, 33, 36, 238, 249
FriOI	GRGCYC	1 cut(s)	52
Fsp4HI	GCNGC	5 cut(s)	6, 33, 36, 238, 249
FspBI	CTAG	1 cut(s)	391
FspI	TGCGCA	1 cut(s)	252
GlaI	GCGC	3 cut(s)	121, 252, 360
GluI	GCNGC	5 cut(s)	6, 33, 36, 238, 249
HaeII	RGCGCY	2 cut(s)	123, 362
HaeIII	GGCC	2 cut(s)	50, 386
HapII	CCGG	3 cut(s)	277, 302, 344
HgaI	GACGC	1 cut(s)	190
HhaI	GCGC	3 cut(s)	122, 253, 361
Hin1I	GRCGYC	2 cut(s)	201, 359
Hin6I	GCGC	3 cut(s)	120, 251, 359
HinP1I	GCGC	3 cut(s)	120, 251, 359
HinfI	GANTC	1 cut(s)	173
HpaII	CCGG	3 cut(s)	277, 302, 344
Hpy188I	TCNGA	4 cut(s)	69, 106, 178, 286
Hpy188III	TCNNGA	2 cut(s)	268, 352
Hpy99I	CGWCG	5 cut(s)	197, 200, 206, 221, 274
HpyAV	CCTTC	1 cut(s)	250
HpyCH4III	ACNGT	1 cut(s)	274
HpyCH4IV	ACGT	1 cut(s)	381
HpyCH4V	TGCA	1 cut(s)	298
HpySE526I	ACGT	1 cut(s)	381
Hsp92I	GRCGYC	2 cut(s)	201, 359
HspAI	GCGC	3 cut(s)	120, 251, 359
KasI	GGCGCC	1 cut(s)	358
KflI	GGGWCCC	1 cut(s)	337
KspI	CCGCGG	1 cut(s)	36
LmnI	GCTCC	1 cut(s)	333
LpnPI	CCDG	9 cut(s)	24, 183, 215, 242, 290, 315, 348, 357, 375
Lsp1109I	GCAGC	3 cut(s)	17, 224, 235
LweI	GCATC	1 cut(s)	315
MaeI	CTAG	1 cut(s)	391
MaeII	ACGT	1 cut(s)	381
MboII	GAAGA	5 cut(s)	53, 56, 109, 197, 334
MhlI	GDGCHC	1 cut(s)	52
MlsI	TGGCCA	1 cut(s)	386
MluNI	TGGCCA	1 cut(s)	386
Mly113I	GGCGCC	1 cut(s)	359
MmeI	TCCRAC	1 cut(s)	309
MnlI	CCTC	4 cut(s)	100, 191, 348, 385
Mox20I	TGGCCA	1 cut(s)	386
MroXI	GAANNNNTTC	1 cut(s)	260
MscI	TGGCCA	1 cut(s)	386
Msp20I	TGGCCA	1 cut(s)	386
MspA1I	CMGCKG	1 cut(s)	35
MspI	CCGG	3 cut(s)	277, 302, 344
MspR9I	CCNGG	4 cut(s)	230, 278, 302, 363
MvaI	CCWGG	2 cut(s)	230, 363
MvnI	CGCG	1 cut(s)	35
NarI	GGCGCC	1 cut(s)	359
NciI	CCSGG	2 cut(s)	278, 302
NlaIV	GGNNCC	5 cut(s)	50, 51, 338, 339, 360
NsbI	TGCGCA	1 cut(s)	252
NspV	TTCGAA	1 cut(s)	95
PcsI	WCGNNNNNNNCGW	3 cut(s)	189, 198, 201
PdmI	GAANNNNTTC	1 cut(s)	260
PfeI	GAWTC	1 cut(s)	173
Pfl23II	CGTACG	1 cut(s)	213
PflFI	GACNNNGTC	1 cut(s)	200
PkrI	GCNGC	5 cut(s)	7, 34, 37, 239, 250
PluTI	GGCGCC	1 cut(s)	362
PpuMI	RGGWCCY	1 cut(s)	337
Psp5II	RGGWCCY	1 cut(s)	337
Psp6I	CCWGG	2 cut(s)	228, 361
PspGI	CCWGG	2 cut(s)	228, 361
PspLI	CGTACG	1 cut(s)	213
PspN4I	GGNNCC	5 cut(s)	50, 51, 338, 339, 360
PspOMI	GGGCCC	1 cut(s)	48
PspPI	GGNCC	5 cut(s)	48, 49, 178, 274, 337
PspPPI	RGGWCCY	1 cut(s)	337
PsyI	GACNNNGTC	1 cut(s)	200
RsaI	GTAC	2 cut(s)	74, 215
RsaNI	GTAC	2 cut(s)	73, 214
Rsr2I	CGGWCCG	1 cut(s)	274
RsrII	CGGWCCG	1 cut(s)	274
SacII	CCGCGG	1 cut(s)	36
SatI	GCNGC	5 cut(s)	6, 33, 36, 238, 249
Sau96I	GGNCC	5 cut(s)	48, 49, 178, 274, 337
ScrFI	CCNGG	4 cut(s)	230, 278, 302, 363
SduI	GDGCHC	1 cut(s)	52
SetI	ASST	4 cut(s)	111, 183, 367, 384
SfaNI	GCATC	1 cut(s)	315
SfoI	GGCGCC	1 cut(s)	360
Sfr303I	CCGCGG	1 cut(s)	36
SfuI	TTCGAA	1 cut(s)	95
SgrBI	CCGCGG	1 cut(s)	36
SinI	GGWCC	3 cut(s)	178, 274, 337
SsiI	CCGC	4 cut(s)	33, 35, 150, 341
SspDI	GGCGCC	1 cut(s)	358
SspMI	CTAG	1 cut(s)	391
StyD4I	CCNGG	4 cut(s)	228, 276, 300, 361
TaaI	ACNGT	1 cut(s)	274
TaiI	ACGT	1 cut(s)	384
TaqI	TCGA	4 cut(s)	95, 126, 183, 204
TauI	GCSGC	2 cut(s)	35, 38
TfiI	GAWTC	1 cut(s)	173
TscAI	CASTG	1 cut(s)	323
TseI	GCWGC	3 cut(s)	5, 237, 248
TspDTI	ATGAA	1 cut(s)	47
TspRI	CASTG	1 cut(s)	323
Tth111I	GACNNNGTC	1 cut(s)	200
VpaK11BI	GGWCC	3 cut(s)	178, 274, 337
XmnI	GAANNNNTTC	1 cut(s)	260
XspI	CTAG	1 cut(s)	391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.