Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0017389

Physical Location & Seq

Genomic Coordinates Reverse (-)

35617447 .. 35618671

Gene Structure 1225 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002521

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGAGAGCATTAAAGAACCCAAGAAGCCCGGTCACTGTGGCCGGAAAAAGACCCCACCAAAGAAAACCCAGCGCTCCACAAAAGCCCAGATTGAAAAATGGCCCGATAGAACTAGAACCCGAATCTTCATATTCGGAGCTCAAAGATTACGACGATGGCATCGATTTCCTGTACGACTACCCGCCCTTGGTTTGCTGCTTTAGGGCAGCCCAGAAAAAGTTTGTCCCGACGGTTCGGGTCTCTGACAACCCGATGGACCTGGACATGCCGCAAGCCGCCGCCGACGCTCTCGTTCGCCTACGAACCAAACTGAGCGATGGAACCGTTGGTTGTCCAACGTCGTTGATCCAGCTTATCGGCTCATCTCCGGTGGCGCCACTCATCTTTTTACCTCTTTCTTCTCCCGGTGAATTTCATCAATACCTTACCGGCGCCGAATGTCCAGTCATCACGGTCAGTCTCTATTCTCTCTATATTAGGGTTTTGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009295 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0018130 GO:0019438 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0042644 GO:0042646 GO:0042793 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043621 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PfkB SOUL

Protein Analysis

164

Amino Acids

17.96

Weight (kDa)

8.68

Isoelectric Point (pI)

48.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017389)

Species	Orthologous Gene IDs
malus_domestica	MD04G1144300.v1.1
rosa_laevigata	RLG00000002521 RLG00000002525 RLG00000025117 RLG00000034796
rosa_multiflora	Rmu_sc0001114.1_g000009 Rmu_sc0004972.1_g000003 Rmu_sc0017770.1_g000006
rosa_samantha	Rh1AG194700 Rh1DG104300 Rh5BG334200 Rh5DG346300 Rh7AG001000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	373, 431
AciI	CCGC	4 cut(s)	182, 269, 276, 279
AclWI	GGATC	1 cut(s)	340
AcoI	YGGCCR	1 cut(s)	39
AcsI	RAATTY	1 cut(s)	410
AcyI	GRCGYC	2 cut(s)	374, 432
AfaI	GTAC	1 cut(s)	173
AfeI	AGCGCT	1 cut(s)	73
AfiI	CCNNNNNNNGG	1 cut(s)	187
AgsI	TTSAA	1 cut(s)	94
AjnI	CCWGG	1 cut(s)	258
AluBI	AGCT	2 cut(s)	139, 352
AluI	AGCT	2 cut(s)	139, 352
Alw21I	GWGCWC	1 cut(s)	141
Alw26I	GTCTC	2 cut(s)	244, 464
AlwI	GGATC	1 cut(s)	340
Aor51HI	AGCGCT	1 cut(s)	73
AoxI	GGCC	2 cut(s)	39, 100
ApeKI	GCWGC	2 cut(s)	195, 206
ApoI	RAATTY	1 cut(s)	410
ArsI	GACNNNNNNTTYG	2 cut(s)	429, 461
AspLEI	GCGC	3 cut(s)	74, 376, 434
AspS9I	GGNCC	2 cut(s)	101, 256
AsuC2I	CCSGG	2 cut(s)	29, 405
AsuHPI	GGTGA	1 cut(s)	419
AvaII	GGWCC	1 cut(s)	256
BanI	GGYRCC	2 cut(s)	373, 431
BanII	GRGCYC	1 cut(s)	141
Bbv12I	GWGCWC	1 cut(s)	141
BbvI	GCAGC	2 cut(s)	182, 218
BccI	CCATC	3 cut(s)	149, 247, 311
BciT130I	CCWGG	1 cut(s)	260
BcnI	CCSGG	2 cut(s)	29, 405
BcoDI	GTCTC	2 cut(s)	244, 464
BfaI	CTAG	1 cut(s)	113
BfoI	RGCGCY	3 cut(s)	75, 377, 435
BisI	GCNGC	5 cut(s)	196, 207, 269, 276, 279
BlsI	GCNGC	5 cut(s)	197, 208, 270, 277, 280
Bme1390I	CCNGG	3 cut(s)	29, 260, 405
Bme18I	GGWCC	1 cut(s)	256
BmgT120I	GGNCC	2 cut(s)	101, 256
BmiI	GGNNCC	3 cut(s)	322, 375, 433
BmrFI	CCNGG	3 cut(s)	29, 260, 405
BmsI	GCATC	1 cut(s)	168
BpuMI	CCSGG	2 cut(s)	29, 405
Bsa29I	ATCGAT	1 cut(s)	162
BsaHI	GRCGYC	2 cut(s)	374, 432
BsaI	GGTCTC	1 cut(s)	244
BsaJI	CCNNGG	1 cut(s)	186
BsaWI	WCCGGW	1 cut(s)	367
Bsc4I	CCNNNNNNNGG	1 cut(s)	187
Bse118I	RCCGGY	1 cut(s)	428
Bse1I	ACTGG	1 cut(s)	443
BseBI	CCWGG	1 cut(s)	260
BseCI	ATCGAT	1 cut(s)	162
BseDI	CCNNGG	1 cut(s)	186
BseLI	CCNNNNNNNGG	1 cut(s)	187
BseMII	CTCAG	1 cut(s)	302
BseNI	ACTGG	1 cut(s)	443
BseXI	GCAGC	2 cut(s)	182, 218
BseYI	CCCAGC	1 cut(s)	68
BshFI	GGCC	2 cut(s)	41, 102
BshNI	GGYRCC	2 cut(s)	373, 431
BshVI	ATCGAT	1 cut(s)	162
BsiHKAI	GWGCWC	1 cut(s)	141
BsiSI	CCGG	5 cut(s)	29, 42, 368, 405, 429
BslFI	GGGAC	1 cut(s)	209
BslI	CCNNNNNNNGG	1 cut(s)	187
BsmAI	GTCTC	2 cut(s)	244, 464
BsmFI	GGGAC	1 cut(s)	209
BsnI	GGCC	2 cut(s)	41, 102
Bso31I	GGTCTC	1 cut(s)	244
Bsp1286I	GDGCHC	1 cut(s)	141
Bsp143I	GATC	1 cut(s)	345
BspACI	CCGC	4 cut(s)	182, 269, 276, 279
BspANI	GGCC	2 cut(s)	41, 102
BspCNI	CTCAG	1 cut(s)	303
BspDI	ATCGAT	1 cut(s)	162
BspLI	GGNNCC	3 cut(s)	322, 375, 433
BspPI	GGATC	1 cut(s)	340
BspT107I	GGYRCC	2 cut(s)	373, 431
BspTNI	GGTCTC	1 cut(s)	244
BsrFI	RCCGGY	1 cut(s)	428
BsrI	ACTGG	1 cut(s)	443
BssAI	RCCGGY	1 cut(s)	428
BssECI	CCNNGG	1 cut(s)	186
BssMI	GATC	1 cut(s)	345
BssNI	GRCGYC	2 cut(s)	374, 432
BssT1I	CCWWGG	1 cut(s)	186
Bst2UI	CCWGG	1 cut(s)	260
Bst4CI	ACNGT	4 cut(s)	37, 232, 325, 454
BstACI	GRCGYC	2 cut(s)	374, 432
BstC8I	GCNNGC	1 cut(s)	273
BstDEI	CTNAG	1 cut(s)	311
BstH2I	RGCGCY	3 cut(s)	75, 377, 435
BstHHI	GCGC	3 cut(s)	74, 376, 434
BstKTI	GATC	1 cut(s)	348
BstMAI	GTCTC	2 cut(s)	244, 464
BstMBI	GATC	1 cut(s)	345
BstMWI	GCNNNNNNNGC	1 cut(s)	284
BstNI	CCWGG	1 cut(s)	260
BstNSI	RCATGY	1 cut(s)	268
BstSCI	CCNGG	3 cut(s)	27, 258, 403
BstV1I	GCAGC	2 cut(s)	182, 218
Bsu15I	ATCGAT	1 cut(s)	162
BsuRI	GGCC	2 cut(s)	41, 102
BsuTUI	ATCGAT	1 cut(s)	162
BtgZI	GCGATG	1 cut(s)	330
BtsIMutI	CAGTG	1 cut(s)	33
Cac8I	GCNNGC	1 cut(s)	273
CfoI	GCGC	3 cut(s)	74, 376, 434
Cfr10I	RCCGGY	1 cut(s)	428
Cfr13I	GGNCC	2 cut(s)	101, 256
ClaI	ATCGAT	1 cut(s)	162
CseI	GACGC	1 cut(s)	293
Csp6I	GTAC	1 cut(s)	172
CviAII	CATG	1 cut(s)	265
CviJI	RGCY	9 cut(s)	27, 41, 85, 102, 139, 209, 275, 352, 360
CviKI_1	RGCY	9 cut(s)	27, 41, 85, 102, 139, 209, 275, 352, 360
CviQI	GTAC	1 cut(s)	172
DdeI	CTNAG	1 cut(s)	311
DinI	GGCGCC	2 cut(s)	375, 433
DpnI	GATC	1 cut(s)	347
DpnII	GATC	1 cut(s)	345
EaeI	YGGCCR	1 cut(s)	39
Ecl136II	GAGCTC	1 cut(s)	139
Eco130I	CCWWGG	1 cut(s)	186
Eco24I	GRGCYC	1 cut(s)	141
Eco31I	GGTCTC	1 cut(s)	244
Eco47I	GGWCC	1 cut(s)	256
Eco47III	AGCGCT	1 cut(s)	73
Eco53kI	GAGCTC	1 cut(s)	139
EcoICRI	GAGCTC	1 cut(s)	139
EcoRII	CCWGG	1 cut(s)	258
EcoT14I	CCWWGG	1 cut(s)	186
EcoT38I	GRGCYC	1 cut(s)	141
EgeI	GGCGCC	2 cut(s)	375, 433
EheI	GGCGCC	2 cut(s)	375, 433
ErhI	CCWWGG	1 cut(s)	186
FaeI	CATG	1 cut(s)	268
FaiI	YATR	3 cut(s)	130, 266, 474
FaqI	GGGAC	1 cut(s)	209
FatI	CATG	1 cut(s)	264
FauI	CCCGC	1 cut(s)	189
Fnu4HI	GCNGC	5 cut(s)	196, 207, 269, 276, 279
FriOI	GRGCYC	1 cut(s)	141
Fsp4HI	GCNGC	5 cut(s)	196, 207, 269, 276, 279
FspBI	CTAG	1 cut(s)	113
GlaI	GCGC	3 cut(s)	73, 375, 433
GluI	GCNGC	5 cut(s)	196, 207, 269, 276, 279
GsaI	CCCAGC	1 cut(s)	72
HaeII	RGCGCY	3 cut(s)	75, 377, 435
HaeIII	GGCC	2 cut(s)	41, 102
HapII	CCGG	5 cut(s)	29, 42, 368, 405, 429
HgaI	GACGC	1 cut(s)	293
HhaI	GCGC	3 cut(s)	74, 376, 434
Hin1I	GRCGYC	2 cut(s)	374, 432
Hin1II	CATG	1 cut(s)	268
Hin6I	GCGC	3 cut(s)	72, 374, 432
HinP1I	GCGC	3 cut(s)	72, 374, 432
HinfI	GANTC	1 cut(s)	122
HpaII	CCGG	5 cut(s)	29, 42, 368, 405, 429
HphI	GGTGA	1 cut(s)	419
Hpy188I	TCNGA	2 cut(s)	136, 244
Hpy188III	TCNNGA	1 cut(s)	226
Hpy99I	CGWCG	4 cut(s)	155, 232, 287, 343
HpyCH4III	ACNGT	4 cut(s)	37, 232, 325, 454
HpyCH4IV	ACGT	1 cut(s)	338
HpyF10VI	GCNNNNNNNGC	1 cut(s)	284
HpyF3I	CTNAG	1 cut(s)	311
HpySE526I	ACGT	1 cut(s)	338
Hsp92I	GRCGYC	2 cut(s)	374, 432
Hsp92II	CATG	1 cut(s)	268
HspAI	GCGC	3 cut(s)	72, 374, 432
KasI	GGCGCC	2 cut(s)	373, 431
Kzo9I	GATC	1 cut(s)	345
LmnI	GCTCC	2 cut(s)	79, 136
Lsp1109I	GCAGC	2 cut(s)	182, 218
LweI	GCATC	1 cut(s)	168
MaeI	CTAG	1 cut(s)	113
MaeII	ACGT	1 cut(s)	338
MaeIII	GTNAC	1 cut(s)	31
MalI	GATC	1 cut(s)	347
MboI	GATC	1 cut(s)	345
MboII	GAAGA	2 cut(s)	117, 390
MhlI	GDGCHC	1 cut(s)	141
MluCI	AATT	1 cut(s)	410
Mly113I	GGCGCC	2 cut(s)	374, 432
MmeI	TCCRAC	1 cut(s)	359
MnlI	CCTC	1 cut(s)	402
MseI	TTAA	1 cut(s)	11
MspI	CCGG	5 cut(s)	29, 42, 368, 405, 429
MspR9I	CCNGG	3 cut(s)	29, 260, 405
MvaI	CCWGG	1 cut(s)	260
MwoI	GCNNNNNNNGC	1 cut(s)	284
NarI	GGCGCC	2 cut(s)	374, 432
NciI	CCSGG	2 cut(s)	29, 405
NdeII	GATC	1 cut(s)	345
NlaIII	CATG	1 cut(s)	268
NlaIV	GGNNCC	3 cut(s)	322, 375, 433
NmuCI	GTSAC	1 cut(s)	31
NspI	RCATGY	1 cut(s)	268
PcsI	WCGNNNNNNNCGW	1 cut(s)	159
PfeI	GAWTC	1 cut(s)	122
PkrI	GCNGC	5 cut(s)	197, 208, 270, 277, 280
PluTI	GGCGCC	2 cut(s)	377, 435
Psp124BI	GAGCTC	1 cut(s)	141
Psp6I	CCWGG	1 cut(s)	258
PspFI	CCCAGC	1 cut(s)	68
PspGI	CCWGG	1 cut(s)	258
PspN4I	GGNNCC	3 cut(s)	322, 375, 433
PspPI	GGNCC	2 cut(s)	101, 256
RsaI	GTAC	1 cut(s)	173
RsaNI	GTAC	1 cut(s)	172
SacI	GAGCTC	1 cut(s)	141
SaqAI	TTAA	1 cut(s)	11
SatI	GCNGC	5 cut(s)	196, 207, 269, 276, 279
Sau3AI	GATC	1 cut(s)	345
Sau96I	GGNCC	2 cut(s)	101, 256
ScrFI	CCNGG	3 cut(s)	29, 260, 405
SduI	GDGCHC	1 cut(s)	141
SetI	ASST	6 cut(s)	141, 261, 341, 354, 394, 426
SfaNI	GCATC	1 cut(s)	168
SfoI	GGCGCC	2 cut(s)	375, 433
SinI	GGWCC	1 cut(s)	256
Sse9I	AATT	1 cut(s)	410
SsiI	CCGC	4 cut(s)	182, 269, 276, 279
SspDI	GGCGCC	2 cut(s)	373, 431
SspMI	CTAG	1 cut(s)	113
SstI	GAGCTC	1 cut(s)	141
StyD4I	CCNGG	3 cut(s)	27, 258, 403
StyI	CCWWGG	1 cut(s)	186
TaaI	ACNGT	4 cut(s)	37, 232, 325, 454
TaiI	ACGT	1 cut(s)	341
TaqI	TCGA	1 cut(s)	162
TasI	AATT	1 cut(s)	410
TauI	GCSGC	3 cut(s)	271, 278, 281
TfiI	GAWTC	1 cut(s)	122
Tru1I	TTAA	1 cut(s)	11
Tru9I	TTAA	1 cut(s)	11
TscAI	CASTG	1 cut(s)	40
TseFI	GTSAC	1 cut(s)	31
TseI	GCWGC	2 cut(s)	195, 206
Tsp45I	GTSAC	1 cut(s)	31
TspDTI	ATGAA	2 cut(s)	117, 404
TspRI	CASTG	1 cut(s)	40
VpaK11BI	GGWCC	1 cut(s)	256
XapI	RAATTY	1 cut(s)	410
XceI	RCATGY	1 cut(s)	268
XspI	CTAG	1 cut(s)	113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.