Rh5BG334200

udp-glucuronic acid decarboxylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0017389
Physical Location & Seq
Reverse (-)
46578442 .. 46581831
3390 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG334200.1

Sequence Viewer

Length: 576 bp
ATGGACCTCGATCTCAATGAAGAGCATTTTGAGGAGCAAACTGAGCATGATCTTGTTCCAAGTGCTGTGGAATCAATGGCTGCTCTTCCTGTCAATATGACTAGGATGCGCAGACCAGTGGAGTCAAGAGTGGAACCAGCAGCCACTGTGGCAAGGTTTTCCCATTTCTTGGGAATGATCGCTCAGGAATCTTCCATGTTTCCCTTCAATACAAAGGATTGGAGAGCATTCCATGCTGGTGCCAACATAGATAATATAAGGGGGACTATTGATTGGAATGACCCTATCACACTGTCGAAGGAGCCTAATATTAGGCATGTAGTTGAGATAAAGTTGAATGATAGGTGGAAGCATTATAAGAGTGAACTTAAGAAGAAATGGTATACTCCATTTATTGGGACTGAGCAAAGGTTTTCTTGTGGAGACTTGCGTGTGAATGTGCATCAATGGAACTTGCTGGTGACCTCCCACACAATCAGGAACGTTCGGTCAAAGCAAAACGGAATAGGCGAGAGTGTCAAGTTAGTCACACATGTGGATCAAAGAGCTTTGCTCAAGTCAGTTTTGAATATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00053 ko00520 ko01100 ko01110 map00053 map00520 map01100 map01110
Pfam Domains
Protein Families
Epimerase GDP_Man_Dehyd Nucleotid_trans

Protein Analysis

191

Amino Acids

22.13

Weight (kDa)

7.95

Isoelectric Point (pI)

52.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 357
Acc16I TGCGCA 1 cut(s) 110
AccB1I GGYRCC 1 cut(s) 239
AccB7I CCANNNNNTGG 2 cut(s) 169, 395
AccI GTMKAC 1 cut(s) 383
AclI AACGTT 1 cut(s) 483
AclWI GGATC 1 cut(s) 546
AfiI CCNNNNNNNGG 2 cut(s) 169, 395
AflII CTTAAG 1 cut(s) 368
AflIII ACRYGT 1 cut(s) 532
AgsI TTSAA 3 cut(s) 208, 337, 568
AleI CACNNNNGTG 1 cut(s) 533
AluBI AGCT 1 cut(s) 548
AluI AGCT 1 cut(s) 548
Alw26I GTCTC 1 cut(s) 417
AlwI GGATC 1 cut(s) 546
AlwNI CAGNNNCTG 1 cut(s) 146
ApeKI GCWGC 2 cut(s) 80, 140
AspLEI GCGC 1 cut(s) 111
AspS9I GGNCC 1 cut(s) 4
AsuHPI GGTGA 1 cut(s) 472
AvaII GGWCC 1 cut(s) 4
BanI GGYRCC 1 cut(s) 239
BbvI GCAGC 2 cut(s) 67, 152
BcoDI GTCTC 1 cut(s) 417
BfaI CTAG 1 cut(s) 102
BfrI CTTAAG 1 cut(s) 368
BglI GCCNNNNNGGC 1 cut(s) 149
BisI GCNGC 2 cut(s) 81, 141
BlsI GCNGC 2 cut(s) 82, 142
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 3 cut(s) 135, 241, 303
BmsI GCATC 2 cut(s) 96, 451
BplI GAGNNNNNCTC 2 cut(s) 537, 569
Bpu10I CCTNAGC 1 cut(s) 183
BpuEI CTTGAG 1 cut(s) 539
Bsc4I CCNNNNNNNGG 2 cut(s) 169, 395
Bse1I ACTGG 1 cut(s) 116
BseGI GGATG 1 cut(s) 111
BseLI CCNNNNNNNGG 2 cut(s) 169, 395
BseMII CTCAG 3 cut(s) 33, 197, 393
BseNI ACTGG 1 cut(s) 116
BseRI GAGGAG 1 cut(s) 47
BseXI GCAGC 2 cut(s) 67, 152
BshNI GGYRCC 1 cut(s) 239
BslFI GGGAC 2 cut(s) 277, 412
BslI CCNNNNNNNGG 2 cut(s) 169, 395
BsmAI GTCTC 1 cut(s) 417
BsmFI GGGAC 2 cut(s) 277, 412
BsmI GAATGC 1 cut(s) 227
Bsp143I GATC 4 cut(s) 10, 49, 177, 538
BspCNI CTCAG 3 cut(s) 34, 196, 394
BspLI GGNNCC 3 cut(s) 135, 241, 303
BspPI GGATC 1 cut(s) 546
BspQI GCTCTTC 2 cut(s) 15, 90
BspT107I GGYRCC 1 cut(s) 239
BspTI CTTAAG 1 cut(s) 368
BsrI ACTGG 1 cut(s) 116
BssMI GATC 4 cut(s) 10, 49, 177, 538
BssNAI GTATAC 1 cut(s) 384
Bst1107I GTATAC 1 cut(s) 384
Bst4CI ACNGT 2 cut(s) 148, 294
Bst6I CTCTTC 2 cut(s) 15, 90
BstAFI CTTAAG 1 cut(s) 368
BstAPI GCANNNNNTGC 1 cut(s) 233
BstDEI CTNAG 3 cut(s) 42, 183, 402
BstEII GGTNACC 1 cut(s) 460
BstF5I GGATG 1 cut(s) 111
BstHHI GCGC 1 cut(s) 111
BstKTI GATC 4 cut(s) 13, 52, 180, 541
BstMAI GTCTC 1 cut(s) 417
BstMBI GATC 4 cut(s) 10, 49, 177, 538
BstMWI GCNNNNNNNGC 3 cut(s) 43, 149, 233
BstNSI RCATGY 2 cut(s) 320, 536
BstPI GGTNACC 1 cut(s) 460
BstV1I GCAGC 2 cut(s) 67, 152
BstZ17I GTATAC 1 cut(s) 384
BtsCI GGATG 1 cut(s) 111
BtsIMutI CAGTG 3 cut(s) 123, 144, 290
CaiI CAGNNNCTG 1 cut(s) 146
CfoI GCGC 1 cut(s) 111
Cfr13I GGNCC 1 cut(s) 4
CspCI CAANNNNNGTGG 2 cut(s) 48, 83
CviAII CATG 5 cut(s) 47, 196, 233, 317, 533
CviJI RGCY 4 cut(s) 80, 143, 304, 548
CviKI_1 RGCY 4 cut(s) 80, 143, 304, 548
DdeI CTNAG 3 cut(s) 42, 183, 402
DpnI GATC 4 cut(s) 12, 51, 179, 540
DpnII GATC 4 cut(s) 10, 49, 177, 538
Eam1104I CTCTTC 2 cut(s) 15, 90
EarI CTCTTC 2 cut(s) 15, 90
Eco47I GGWCC 1 cut(s) 4
Eco91I GGTNACC 1 cut(s) 460
EcoO65I GGTNACC 1 cut(s) 460
FaeI CATG 5 cut(s) 50, 199, 236, 320, 536
FalI AAGNNNNNCTT 2 cut(s) 400, 432
FaqI GGGAC 2 cut(s) 277, 412
FatI CATG 5 cut(s) 46, 195, 232, 316, 532
FblI GTMKAC 1 cut(s) 383
Fnu4HI GCNGC 2 cut(s) 81, 141
FokI GGATG 1 cut(s) 118
Fsp4HI GCNGC 2 cut(s) 81, 141
FspBI CTAG 1 cut(s) 102
FspI TGCGCA 1 cut(s) 110
GlaI GCGC 1 cut(s) 110
GluI GCNGC 2 cut(s) 81, 141
HhaI GCGC 1 cut(s) 111
Hin1II CATG 5 cut(s) 50, 199, 236, 320, 536
Hin6I GCGC 1 cut(s) 109
HinP1I GCGC 1 cut(s) 109
HinfI GANTC 3 cut(s) 71, 122, 188
HphI GGTGA 1 cut(s) 472
Hpy166II GTNNAC 2 cut(s) 365, 384
Hpy188III TCNNGA 3 cut(s) 126, 185, 478
Hpy8I GTNNAC 2 cut(s) 365, 384
HpyAV CCTTC 2 cut(s) 214, 292
HpyCH4III ACNGT 2 cut(s) 148, 294
HpyCH4IV ACGT 1 cut(s) 483
HpyCH4V TGCA 1 cut(s) 442
HpyF10VI GCNNNNNNNGC 3 cut(s) 43, 149, 233
HpyF3I CTNAG 3 cut(s) 42, 183, 402
HpySE526I ACGT 1 cut(s) 483
Hsp92II CATG 5 cut(s) 50, 199, 236, 320, 536
HspAI GCGC 1 cut(s) 109
Kzo9I GATC 4 cut(s) 10, 49, 177, 538
LguI GCTCTTC 2 cut(s) 15, 90
LmnI GCTCC 2 cut(s) 34, 301
LpnPI CCDG 7 cut(s) 102, 129, 150, 170, 222, 443, 463
Lsp1109I GCAGC 2 cut(s) 67, 152
LweI GCATC 2 cut(s) 96, 451
MaeI CTAG 1 cut(s) 102
MaeII ACGT 1 cut(s) 483
MaeIII GTNAC 2 cut(s) 460, 526
MalI GATC 4 cut(s) 12, 51, 179, 540
MboI GATC 4 cut(s) 10, 49, 177, 538
MboII GAAGA 4 cut(s) 32, 77, 183, 385
MlyI GAGTC 1 cut(s) 131
MnlI CCTC 3 cut(s) 17, 25, 475
MseI TTAA 1 cut(s) 369
MslI CAYNNNNRTG 2 cut(s) 237, 533
MspCI CTTAAG 1 cut(s) 368
Mva1269I GAATGC 1 cut(s) 227
MwoI GCNNNNNNNGC 3 cut(s) 43, 149, 233
NdeII GATC 4 cut(s) 10, 49, 177, 538
NlaIII CATG 5 cut(s) 50, 199, 236, 320, 536
NlaIV GGNNCC 3 cut(s) 135, 241, 303
NmuCI GTSAC 2 cut(s) 460, 526
NsbI TGCGCA 1 cut(s) 110
NspI RCATGY 2 cut(s) 320, 536
OliI CACNNNNGTG 1 cut(s) 533
PciI ACATGT 1 cut(s) 532
PciSI GCTCTTC 2 cut(s) 15, 90
PcsI WCGNNNNNNNCGW 1 cut(s) 507
PctI GAATGC 1 cut(s) 227
PfeI GAWTC 2 cut(s) 71, 188
PflMI CCANNNNNTGG 2 cut(s) 169, 395
PkrI GCNGC 2 cut(s) 82, 142
PleI GAGTC 1 cut(s) 130
PpsI GAGTC 1 cut(s) 130
PscI ACATGT 1 cut(s) 532
PsiI TTATAA 1 cut(s) 357
Psp1406I AACGTT 1 cut(s) 483
PspEI GGTNACC 1 cut(s) 460
PspN4I GGNNCC 3 cut(s) 135, 241, 303
PspPI GGNCC 1 cut(s) 4
PstNI CAGNNNCTG 1 cut(s) 146
RseI CAYNNNNRTG 2 cut(s) 237, 533
SapI GCTCTTC 2 cut(s) 15, 90
SaqAI TTAA 1 cut(s) 369
SatI GCNGC 2 cut(s) 81, 141
Sau3AI GATC 4 cut(s) 10, 49, 177, 538
Sau96I GGNCC 1 cut(s) 4
SchI GAGTC 1 cut(s) 131
SetI ASST 7 cut(s) 9, 158, 347, 413, 467, 486, 550
SfaNI GCATC 2 cut(s) 96, 451
SinI GGWCC 1 cut(s) 4
SmiMI CAYNNNNRTG 2 cut(s) 237, 533
SmlI CTYRAG 2 cut(s) 368, 554
SmoI CTYRAG 2 cut(s) 368, 554
SspI AATATT 1 cut(s) 310
SspMI CTAG 1 cut(s) 102
TaaI ACNGT 2 cut(s) 148, 294
TaiI ACGT 1 cut(s) 486
TaqI TCGA 2 cut(s) 9, 296
TaqII GACCGA 1 cut(s) 477
TfiI GAWTC 2 cut(s) 71, 188
Tru1I TTAA 1 cut(s) 369
Tru9I TTAA 1 cut(s) 369
TscAI CASTG 3 cut(s) 123, 151, 297
TseFI GTSAC 2 cut(s) 460, 526
TseI GCWGC 2 cut(s) 80, 140
Tsp45I GTSAC 2 cut(s) 460, 526
TspDTI ATGAA 1 cut(s) 33
TspGWI ACGGA 1 cut(s) 516
TspRI CASTG 3 cut(s) 123, 151, 297
Van91I CCANNNNNTGG 2 cut(s) 169, 395
Vha464I CTTAAG 1 cut(s) 368
VpaK11BI GGWCC 1 cut(s) 4
XceI RCATGY 2 cut(s) 320, 536
XmiI GTMKAC 1 cut(s) 383
XspI CTAG 1 cut(s) 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.