Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0017389

Physical Location & Seq

Genomic Coordinates Reverse (-)

47341617 .. 47346640

Gene Structure 5024 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG346300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGGACCTCGATCTCAATGAAGAGCATTTTGAGGAGCAAACTGAGCATGATCTTGTTCCAAGTGCTGTGGAATCAATGGCTGCTCTTCCTGTCAATATGACTAGGATGCGCAGACCAGGGACTATTGATTGGAATGACCCTATCACACTGTCGAAGGAGCCTAATATTAGGCATGTAGTTGAGATAAAGTTGAATGATAGGTGGAAGCATTATAAGAGTGAACTTAAGAAGAAATGGTATACTCCATTTATTGGGACTGAGCAAAGGTTTTCTTGTGGAGACTTGCGTGTGAATGTGCATCAATGGAACTTGCTGGTGACCTCCCACACAATCAGGAACGTTCGGTCAAAGCAAAACGGAATAGGCGAGAGTGTCAAGTTAGTCACACATGTGGATCAAAGAGCTTTGCTCAAAGCTTCCGGTGAAGTGAGAGCATTGAAGAACCCAAGAAGCCCGGTTGTCGTGGCCGGAAAAAGACCCCACCAAAGAAAACCCAGCGCTCCAAAAAAGCCCAGATTGAAAAATGGCTCGATAGAACTAGAACCCGAATCTTCAGATTCGGAGCTCAAAGATTACGACGGCATCGATTTCCTGTACGACTACCCGCCCTTGGTTTGCTGCTTTAGGGCAACCCAGAAAAAGTTTGTCCCGACGGTTCGGGTCTCTGACAACCCGATGGACCTGGACATGTACAACCAGTGGAGATGCTCTAGTGGCACTGGAAGATCGACGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009295 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0018130 GO:0019438 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0042644 GO:0042646 GO:0042793 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043621 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PfkB SOUL

Protein Analysis

245

Amino Acids

28.19

Weight (kDa)

9.1

Isoelectric Point (pI)

48.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017389)

Species	Orthologous Gene IDs
malus_domestica	MD04G1144300.v1.1
rosa_laevigata	RLG00000002521 RLG00000002525 RLG00000025117 RLG00000034796
rosa_multiflora	Rmu_sc0001114.1_g000009 Rmu_sc0004972.1_g000003 Rmu_sc0017770.1_g000006
rosa_samantha	Rh1AG194700 Rh1DG104300 Rh5BG334200 Rh5DG346300 Rh7AG001000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	213
Acc16I	TGCGCA	1 cut(s)	110
AccB7I	CCANNNNNTGG	1 cut(s)	251
AccI	GTMKAC	1 cut(s)	239
AciI	CCGC	1 cut(s)	605
AclI	AACGTT	1 cut(s)	339
AclWI	GGATC	1 cut(s)	402
AcoI	YGGCCR	1 cut(s)	465
AcuI	CTGAAG	1 cut(s)	537
AfaI	GTAC	2 cut(s)	596, 692
AfeI	AGCGCT	1 cut(s)	499
AfiI	CCNNNNNNNGG	2 cut(s)	251, 610
AflII	CTTAAG	1 cut(s)	224
AflIII	ACRYGT	2 cut(s)	388, 687
AgsI	TTSAA	3 cut(s)	193, 439, 520
AjnI	CCWGG	2 cut(s)	115, 681
AleI	CACNNNNGTG	1 cut(s)	389
AluBI	AGCT	3 cut(s)	404, 416, 565
AluI	AGCT	3 cut(s)	404, 416, 565
Alw21I	GWGCWC	1 cut(s)	567
Alw26I	GTCTC	2 cut(s)	273, 667
AlwI	GGATC	1 cut(s)	402
Aor51HI	AGCGCT	1 cut(s)	499
AoxI	GGCC	1 cut(s)	465
ApeKI	GCWGC	2 cut(s)	80, 618
AspLEI	GCGC	2 cut(s)	111, 500
AspS9I	GGNCC	2 cut(s)	4, 679
AsuC2I	CCSGG	1 cut(s)	455
AsuHPI	GGTGA	2 cut(s)	328, 434
AvaII	GGWCC	2 cut(s)	4, 679
BanII	GRGCYC	1 cut(s)	567
Bbv12I	GWGCWC	1 cut(s)	567
BbvI	GCAGC	2 cut(s)	67, 605
BccI	CCATC	1 cut(s)	670
BceAI	ACGGC	1 cut(s)	595
BciT130I	CCWGG	2 cut(s)	117, 683
BcnI	CCSGG	1 cut(s)	455
BcoDI	GTCTC	2 cut(s)	273, 667
BfaI	CTAG	3 cut(s)	102, 539, 711
BfoI	RGCGCY	1 cut(s)	501
BfrI	CTTAAG	1 cut(s)	224
BisI	GCNGC	2 cut(s)	81, 619
BlsI	GCNGC	2 cut(s)	82, 620
Bme1390I	CCNGG	3 cut(s)	117, 455, 683
Bme18I	GGWCC	2 cut(s)	4, 679
BmgT120I	GGNCC	2 cut(s)	4, 679
BmiI	GGNNCC	1 cut(s)	159
BmrFI	CCNGG	3 cut(s)	117, 455, 683
BmsI	GCATC	4 cut(s)	96, 307, 591, 695
BplI	GAGNNNNNCTC	2 cut(s)	393, 425
BpuMI	CCSGG	1 cut(s)	455
Bsa29I	ATCGAT	1 cut(s)	585
BsaI	GGTCTC	1 cut(s)	667
BsaJI	CCNNGG	2 cut(s)	116, 609
BsaWI	WCCGGW	1 cut(s)	419
Bsc4I	CCNNNNNNNGG	2 cut(s)	251, 610
Bse1I	ACTGG	2 cut(s)	697, 724
BseBI	CCWGG	2 cut(s)	117, 683
BseCI	ATCGAT	1 cut(s)	585
BseDI	CCNNGG	2 cut(s)	116, 609
BseGI	GGATG	1 cut(s)	111
BseLI	CCNNNNNNNGG	2 cut(s)	251, 610
BseMII	CTCAG	2 cut(s)	33, 249
BseNI	ACTGG	2 cut(s)	697, 724
BseRI	GAGGAG	1 cut(s)	47
BseXI	GCAGC	2 cut(s)	67, 605
BseYI	CCCAGC	1 cut(s)	494
BshFI	GGCC	1 cut(s)	467
BshVI	ATCGAT	1 cut(s)	585
BsiHKAI	GWGCWC	1 cut(s)	567
BsiSI	CCGG	3 cut(s)	420, 455, 468
BslFI	GGGAC	3 cut(s)	133, 268, 632
BslI	CCNNNNNNNGG	2 cut(s)	251, 610
BsmAI	GTCTC	2 cut(s)	273, 667
BsmFI	GGGAC	3 cut(s)	133, 268, 632
BsnI	GGCC	1 cut(s)	467
Bso31I	GGTCTC	1 cut(s)	667
Bsp1286I	GDGCHC	1 cut(s)	567
Bsp1407I	TGTACA	1 cut(s)	690
Bsp143I	GATC	5 cut(s)	10, 49, 394, 725, 732
BspACI	CCGC	1 cut(s)	605
BspANI	GGCC	1 cut(s)	467
BspCNI	CTCAG	2 cut(s)	34, 250
BspDI	ATCGAT	1 cut(s)	585
BspLI	GGNNCC	1 cut(s)	159
BspPI	GGATC	1 cut(s)	402
BspQI	GCTCTTC	2 cut(s)	15, 90
BspTI	CTTAAG	1 cut(s)	224
BspTNI	GGTCTC	1 cut(s)	667
BsrGI	TGTACA	1 cut(s)	690
BsrI	ACTGG	2 cut(s)	697, 724
BssECI	CCNNGG	2 cut(s)	116, 609
BssMI	GATC	5 cut(s)	10, 49, 394, 725, 732
BssNAI	GTATAC	1 cut(s)	240
BssT1I	CCWWGG	1 cut(s)	609
Bst1107I	GTATAC	1 cut(s)	240
Bst2UI	CCWGG	2 cut(s)	117, 683
Bst4CI	ACNGT	2 cut(s)	150, 655
Bst6I	CTCTTC	2 cut(s)	15, 90
BstAFI	CTTAAG	1 cut(s)	224
BstAUI	TGTACA	1 cut(s)	690
BstDEI	CTNAG	2 cut(s)	42, 258
BstEII	GGTNACC	1 cut(s)	316
BstF5I	GGATG	1 cut(s)	111
BstH2I	RGCGCY	1 cut(s)	501
BstHHI	GCGC	2 cut(s)	111, 500
BstKTI	GATC	5 cut(s)	13, 52, 397, 728, 735
BstMAI	GTCTC	2 cut(s)	273, 667
BstMBI	GATC	5 cut(s)	10, 49, 394, 725, 732
BstMWI	GCNNNNNNNGC	2 cut(s)	43, 714
BstNI	CCWGG	2 cut(s)	117, 683
BstNSI	RCATGY	3 cut(s)	176, 392, 691
BstPI	GGTNACC	1 cut(s)	316
BstSCI	CCNGG	3 cut(s)	115, 453, 681
BstV1I	GCAGC	2 cut(s)	67, 605
BstZ17I	GTATAC	1 cut(s)	240
Bsu15I	ATCGAT	1 cut(s)	585
BsuRI	GGCC	1 cut(s)	467
BsuTUI	ATCGAT	1 cut(s)	585
BtsCI	GGATG	1 cut(s)	111
BtsIMutI	CAGTG	3 cut(s)	146, 704, 717
CfoI	GCGC	2 cut(s)	111, 500
Cfr13I	GGNCC	2 cut(s)	4, 679
ClaI	ATCGAT	1 cut(s)	585
Csp6I	GTAC	2 cut(s)	595, 691
CspCI	CAANNNNNGTGG	2 cut(s)	48, 83
CviAII	CATG	4 cut(s)	47, 173, 389, 688
CviJI	RGCY	9 cut(s)	80, 160, 404, 416, 453, 467, 511, 528, 565
CviKI_1	RGCY	9 cut(s)	80, 160, 404, 416, 453, 467, 511, 528, 565
CviQI	GTAC	2 cut(s)	595, 691
DdeI	CTNAG	2 cut(s)	42, 258
DpnI	GATC	5 cut(s)	12, 51, 396, 727, 734
DpnII	GATC	5 cut(s)	10, 49, 394, 725, 732
EaeI	YGGCCR	1 cut(s)	465
Eam1104I	CTCTTC	2 cut(s)	15, 90
EarI	CTCTTC	2 cut(s)	15, 90
Ecl136II	GAGCTC	1 cut(s)	565
Eco130I	CCWWGG	1 cut(s)	609
Eco24I	GRGCYC	1 cut(s)	567
Eco31I	GGTCTC	1 cut(s)	667
Eco47I	GGWCC	2 cut(s)	4, 679
Eco47III	AGCGCT	1 cut(s)	499
Eco53kI	GAGCTC	1 cut(s)	565
Eco57I	CTGAAG	1 cut(s)	537
Eco91I	GGTNACC	1 cut(s)	316
EcoICRI	GAGCTC	1 cut(s)	565
EcoO65I	GGTNACC	1 cut(s)	316
EcoRII	CCWGG	2 cut(s)	115, 681
EcoT14I	CCWWGG	1 cut(s)	609
EcoT38I	GRGCYC	1 cut(s)	567
ErhI	CCWWGG	1 cut(s)	609
FaeI	CATG	4 cut(s)	50, 176, 392, 691
FaiI	YATR	7 cut(s)	48, 98, 174, 213, 240, 390, 689
FalI	AAGNNNNNCTT	2 cut(s)	256, 288
FaqI	GGGAC	3 cut(s)	133, 268, 632
FatI	CATG	4 cut(s)	46, 172, 388, 687
FauI	CCCGC	1 cut(s)	612
FblI	GTMKAC	1 cut(s)	239
Fnu4HI	GCNGC	2 cut(s)	81, 619
FokI	GGATG	1 cut(s)	118
FriOI	GRGCYC	1 cut(s)	567
Fsp4HI	GCNGC	2 cut(s)	81, 619
FspBI	CTAG	3 cut(s)	102, 539, 711
FspI	TGCGCA	1 cut(s)	110
GlaI	GCGC	2 cut(s)	110, 499
GluI	GCNGC	2 cut(s)	81, 619
GsaI	CCCAGC	1 cut(s)	498
HaeII	RGCGCY	1 cut(s)	501
HaeIII	GGCC	1 cut(s)	467
HapII	CCGG	3 cut(s)	420, 455, 468
HhaI	GCGC	2 cut(s)	111, 500
Hin1II	CATG	4 cut(s)	50, 176, 392, 691
Hin6I	GCGC	2 cut(s)	109, 498
HinP1I	GCGC	2 cut(s)	109, 498
HindIII	AAGCTT	1 cut(s)	414
HinfI	GANTC	3 cut(s)	71, 548, 557
HpaII	CCGG	3 cut(s)	420, 455, 468
HphI	GGTGA	2 cut(s)	328, 434
Hpy166II	GTNNAC	2 cut(s)	221, 240
Hpy188I	TCNGA	4 cut(s)	556, 562, 667, 737
Hpy188III	TCNNGA	2 cut(s)	334, 649
Hpy8I	GTNNAC	2 cut(s)	221, 240
Hpy99I	CGWCG	3 cut(s)	581, 655, 733
HpyAV	CCTTC	1 cut(s)	148
HpyCH4III	ACNGT	2 cut(s)	150, 655
HpyCH4IV	ACGT	1 cut(s)	339
HpyCH4V	TGCA	1 cut(s)	298
HpyF10VI	GCNNNNNNNGC	2 cut(s)	43, 714
HpyF3I	CTNAG	2 cut(s)	42, 258
HpySE526I	ACGT	1 cut(s)	339
Hsp92II	CATG	4 cut(s)	50, 176, 392, 691
HspAI	GCGC	2 cut(s)	109, 498
Kzo9I	GATC	5 cut(s)	10, 49, 394, 725, 732
LguI	GCTCTTC	2 cut(s)	15, 90
LmnI	GCTCC	4 cut(s)	34, 157, 505, 562
Lsp1109I	GCAGC	2 cut(s)	67, 605
LweI	GCATC	4 cut(s)	96, 307, 591, 695
MaeI	CTAG	3 cut(s)	102, 539, 711
MaeII	ACGT	1 cut(s)	339
MaeIII	GTNAC	2 cut(s)	316, 382
MalI	GATC	5 cut(s)	12, 51, 396, 727, 734
MboI	GATC	5 cut(s)	10, 49, 394, 725, 732
MboII	GAAGA	6 cut(s)	32, 77, 241, 451, 543, 735
MhlI	GDGCHC	1 cut(s)	567
MnlI	CCTC	3 cut(s)	17, 25, 331
MseI	TTAA	1 cut(s)	225
MslI	CAYNNNNRTG	1 cut(s)	389
MspCI	CTTAAG	1 cut(s)	224
MspI	CCGG	3 cut(s)	420, 455, 468
MspR9I	CCNGG	3 cut(s)	117, 455, 683
MvaI	CCWGG	2 cut(s)	117, 683
MwoI	GCNNNNNNNGC	2 cut(s)	43, 714
NciI	CCSGG	1 cut(s)	455
NdeII	GATC	5 cut(s)	10, 49, 394, 725, 732
NlaIII	CATG	4 cut(s)	50, 176, 392, 691
NlaIV	GGNNCC	1 cut(s)	159
NmuCI	GTSAC	2 cut(s)	316, 382
NsbI	TGCGCA	1 cut(s)	110
NspI	RCATGY	3 cut(s)	176, 392, 691
OliI	CACNNNNGTG	1 cut(s)	389
PciI	ACATGT	2 cut(s)	388, 687
PciSI	GCTCTTC	2 cut(s)	15, 90
PcsI	WCGNNNNNNNCGW	2 cut(s)	363, 582
PfeI	GAWTC	3 cut(s)	71, 548, 557
PflMI	CCANNNNNTGG	1 cut(s)	251
PkrI	GCNGC	2 cut(s)	82, 620
PscI	ACATGT	2 cut(s)	388, 687
PsiI	TTATAA	1 cut(s)	213
Psp124BI	GAGCTC	1 cut(s)	567
Psp1406I	AACGTT	1 cut(s)	339
Psp6I	CCWGG	2 cut(s)	115, 681
PspEI	GGTNACC	1 cut(s)	316
PspFI	CCCAGC	1 cut(s)	494
PspGI	CCWGG	2 cut(s)	115, 681
PspN4I	GGNNCC	1 cut(s)	159
PspPI	GGNCC	2 cut(s)	4, 679
RsaI	GTAC	2 cut(s)	596, 692
RsaNI	GTAC	2 cut(s)	595, 691
RseI	CAYNNNNRTG	1 cut(s)	389
SacI	GAGCTC	1 cut(s)	567
SapI	GCTCTTC	2 cut(s)	15, 90
SaqAI	TTAA	1 cut(s)	225
SatI	GCNGC	2 cut(s)	81, 619
Sau3AI	GATC	5 cut(s)	10, 49, 394, 725, 732
Sau96I	GGNCC	2 cut(s)	4, 679
ScrFI	CCNGG	3 cut(s)	117, 455, 683
SduI	GDGCHC	1 cut(s)	567
SetI	ASST	9 cut(s)	9, 203, 269, 323, 342, 406, 418, 567, 684
SfaNI	GCATC	4 cut(s)	96, 307, 591, 695
SinI	GGWCC	2 cut(s)	4, 679
SmiMI	CAYNNNNRTG	1 cut(s)	389
SmlI	CTYRAG	1 cut(s)	224
SmoI	CTYRAG	1 cut(s)	224
SsiI	CCGC	1 cut(s)	605
SspI	AATATT	1 cut(s)	166
SspMI	CTAG	3 cut(s)	102, 539, 711
SstI	GAGCTC	1 cut(s)	567
StyD4I	CCNGG	3 cut(s)	115, 453, 681
StyI	CCWWGG	1 cut(s)	609
TaaI	ACNGT	2 cut(s)	150, 655
TaiI	ACGT	1 cut(s)	342
TaqI	TCGA	5 cut(s)	9, 152, 530, 585, 728
TaqII	GACCGA	1 cut(s)	333
TatI	WGTACW	1 cut(s)	690
TfiI	GAWTC	3 cut(s)	71, 548, 557
Tru1I	TTAA	1 cut(s)	225
Tru9I	TTAA	1 cut(s)	225
TscAI	CASTG	3 cut(s)	153, 704, 724
TseFI	GTSAC	2 cut(s)	316, 382
TseI	GCWGC	2 cut(s)	80, 618
Tsp45I	GTSAC	2 cut(s)	316, 382
TspDTI	ATGAA	1 cut(s)	33
TspGWI	ACGGA	1 cut(s)	372
TspRI	CASTG	3 cut(s)	153, 704, 724
Van91I	CCANNNNNTGG	1 cut(s)	251
Vha464I	CTTAAG	1 cut(s)	224
VpaK11BI	GGWCC	2 cut(s)	4, 679
XceI	RCATGY	3 cut(s)	176, 392, 691
XmiI	GTMKAC	1 cut(s)	239
XspI	CTAG	3 cut(s)	102, 539, 711

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.