Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0017389

Physical Location & Seq

Genomic Coordinates Reverse (-)

19471524 .. 19471877

Gene Structure 354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG104300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGGGAGCATTGAAGAACCCAAGAAGCCCGGTCGCCGTGGCGGGAAAAAGACCCCACCGAAGAAAACCCAGCGCTCCAAAAAAGCCCAGGTTGAAAAATGGCCCGATAGAACTAGAACCCGAATCTTCAGATTCGGAGCTCGAAGATTACGACGACGGCATCGATTTCCTGTACGACTACCCGCCCTTGGTCTGCTACTCTGCTGCTTCGGGGCAGCCCAGAAAAAGTTCGTCCCGACGGTTCGGGTCTCTGACAACCCGATGGACCCAGACATGTACAACCAGTGGAGATGCTCCAGTGGCACTGGAAGATCGACGATCTGATTCGCCGGAGGCCTCGGTTGAGCATCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009295 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0018130 GO:0019438 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0042644 GO:0042646 GO:0042793 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043621 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PfkB SOUL

Protein Analysis

117

Amino Acids

12.9

Weight (kDa)

7.78

Isoelectric Point (pI)

80.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017389)

Species	Orthologous Gene IDs
malus_domestica	MD04G1144300.v1.1
rosa_laevigata	RLG00000002521 RLG00000002525 RLG00000025117 RLG00000034796
rosa_multiflora	Rmu_sc0001114.1_g000009 Rmu_sc0004972.1_g000003 Rmu_sc0017770.1_g000006
rosa_samantha	Rh1AG194700 Rh1DG104300 Rh5BG334200 Rh5DG346300 Rh7AG001000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	41, 182
AcuI	CTGAAG	1 cut(s)	111
AfaI	GTAC	2 cut(s)	173, 277
AfeI	AGCGCT	1 cut(s)	73
AfiI	CCNNNNNNNGG	1 cut(s)	187
AflIII	ACRYGT	1 cut(s)	272
AgsI	TTSAA	2 cut(s)	13, 94
AjnI	CCWGG	1 cut(s)	86
AluBI	AGCT	1 cut(s)	139
AluI	AGCT	1 cut(s)	139
Alw21I	GWGCWC	1 cut(s)	141
Alw26I	GTCTC	1 cut(s)	252
Aor51HI	AGCGCT	1 cut(s)	73
AoxI	GGCC	2 cut(s)	100, 333
ApeKI	GCWGC	2 cut(s)	203, 214
Asp700I	GAANNNNTTC	1 cut(s)	226
AspLEI	GCGC	1 cut(s)	74
AspS9I	GGNCC	2 cut(s)	101, 264
AsuC2I	CCSGG	1 cut(s)	29
AvaII	GGWCC	1 cut(s)	264
BanII	GRGCYC	1 cut(s)	141
Bbv12I	GWGCWC	1 cut(s)	141
BbvI	GCAGC	2 cut(s)	190, 226
BccI	CCATC	1 cut(s)	255
BceAI	ACGGC	2 cut(s)	20, 172
BciT130I	CCWGG	1 cut(s)	88
BcnI	CCSGG	1 cut(s)	29
BcoDI	GTCTC	1 cut(s)	252
BfaI	CTAG	1 cut(s)	113
BfoI	RGCGCY	1 cut(s)	75
BisI	GCNGC	2 cut(s)	204, 215
BlsI	GCNGC	2 cut(s)	205, 216
Bme1390I	CCNGG	2 cut(s)	29, 88
Bme18I	GGWCC	1 cut(s)	264
BmgT120I	GGNCC	2 cut(s)	101, 264
BmiI	GGNNCC	1 cut(s)	266
BmrFI	CCNGG	2 cut(s)	29, 88
BmsI	GCATC	2 cut(s)	168, 280
BpmI	CTGGAG	1 cut(s)	279
BpuMI	CCSGG	1 cut(s)	29
Bsa29I	ATCGAT	1 cut(s)	162
BsaI	GGTCTC	1 cut(s)	252
BsaJI	CCNNGG	4 cut(s)	36, 86, 186, 336
Bsc4I	CCNNNNNNNGG	1 cut(s)	187
Bse1I	ACTGG	3 cut(s)	282, 296, 309
BseBI	CCWGG	1 cut(s)	88
BseCI	ATCGAT	1 cut(s)	162
BseDI	CCNNGG	4 cut(s)	36, 86, 186, 336
BseLI	CCNNNNNNNGG	1 cut(s)	187
BseNI	ACTGG	3 cut(s)	282, 296, 309
BseXI	GCAGC	2 cut(s)	190, 226
BseYI	CCCAGC	1 cut(s)	68
Bsh1285I	CGRYCG	1 cut(s)	33
BshFI	GGCC	2 cut(s)	102, 335
BshVI	ATCGAT	1 cut(s)	162
BsiEI	CGRYCG	1 cut(s)	33
BsiHKAI	GWGCWC	1 cut(s)	141
BsiSI	CCGG	2 cut(s)	29, 329
BslFI	GGGAC	1 cut(s)	217
BslI	CCNNNNNNNGG	1 cut(s)	187
BsmAI	GTCTC	1 cut(s)	252
BsmFI	GGGAC	1 cut(s)	217
BsnI	GGCC	2 cut(s)	102, 335
Bso31I	GGTCTC	1 cut(s)	252
Bsp1286I	GDGCHC	1 cut(s)	141
Bsp1407I	TGTACA	1 cut(s)	275
Bsp143I	GATC	2 cut(s)	310, 317
BspACI	CCGC	2 cut(s)	41, 182
BspANI	GGCC	2 cut(s)	102, 335
BspDI	ATCGAT	1 cut(s)	162
BspLI	GGNNCC	1 cut(s)	266
BspTNI	GGTCTC	1 cut(s)	252
BsrGI	TGTACA	1 cut(s)	275
BsrI	ACTGG	3 cut(s)	282, 296, 309
BssECI	CCNNGG	4 cut(s)	36, 86, 186, 336
BssMI	GATC	2 cut(s)	310, 317
BssT1I	CCWWGG	1 cut(s)	186
Bst2UI	CCWGG	1 cut(s)	88
Bst4CI	ACNGT	1 cut(s)	240
BstAUI	TGTACA	1 cut(s)	275
BstDSI	CCRYGG	1 cut(s)	36
BstH2I	RGCGCY	1 cut(s)	75
BstHHI	GCGC	1 cut(s)	74
BstKTI	GATC	2 cut(s)	313, 320
BstMAI	GTCTC	1 cut(s)	252
BstMBI	GATC	2 cut(s)	310, 317
BstMCI	CGRYCG	1 cut(s)	33
BstMWI	GCNNNNNNNGC	1 cut(s)	299
BstNI	CCWGG	1 cut(s)	88
BstNSI	RCATGY	1 cut(s)	276
BstSCI	CCNGG	2 cut(s)	27, 86
BstV1I	GCAGC	2 cut(s)	190, 226
Bsu15I	ATCGAT	1 cut(s)	162
BsuRI	GGCC	2 cut(s)	102, 335
BsuTUI	ATCGAT	1 cut(s)	162
BtgI	CCRYGG	1 cut(s)	36
BtsIMutI	CAGTG	3 cut(s)	289, 302, 303
CfoI	GCGC	1 cut(s)	74
Cfr13I	GGNCC	2 cut(s)	101, 264
ClaI	ATCGAT	1 cut(s)	162
Csp6I	GTAC	2 cut(s)	172, 276
CviAII	CATG	1 cut(s)	273
CviJI	RGCY	6 cut(s)	27, 85, 102, 139, 217, 335
CviKI_1	RGCY	6 cut(s)	27, 85, 102, 139, 217, 335
CviQI	GTAC	2 cut(s)	172, 276
DpnI	GATC	2 cut(s)	312, 319
DpnII	GATC	2 cut(s)	310, 317
Ecl136II	GAGCTC	1 cut(s)	139
Eco130I	CCWWGG	1 cut(s)	186
Eco147I	AGGCCT	1 cut(s)	335
Eco24I	GRGCYC	1 cut(s)	141
Eco31I	GGTCTC	1 cut(s)	252
Eco47I	GGWCC	1 cut(s)	264
Eco47III	AGCGCT	1 cut(s)	73
Eco53kI	GAGCTC	1 cut(s)	139
Eco57I	CTGAAG	1 cut(s)	111
EcoICRI	GAGCTC	1 cut(s)	139
EcoRII	CCWGG	1 cut(s)	86
EcoT14I	CCWWGG	1 cut(s)	186
EcoT38I	GRGCYC	1 cut(s)	141
ErhI	CCWWGG	1 cut(s)	186
FaeI	CATG	1 cut(s)	276
FaiI	YATR	1 cut(s)	274
FaqI	GGGAC	1 cut(s)	217
FatI	CATG	1 cut(s)	272
FauI	CCCGC	2 cut(s)	34, 189
Fnu4HI	GCNGC	2 cut(s)	204, 215
FriOI	GRGCYC	1 cut(s)	141
Fsp4HI	GCNGC	2 cut(s)	204, 215
FspBI	CTAG	1 cut(s)	113
GlaI	GCGC	1 cut(s)	73
GluI	GCNGC	2 cut(s)	204, 215
GsaI	CCCAGC	1 cut(s)	72
GsuI	CTGGAG	1 cut(s)	279
HaeII	RGCGCY	1 cut(s)	75
HaeIII	GGCC	2 cut(s)	102, 335
HapII	CCGG	2 cut(s)	29, 329
HhaI	GCGC	1 cut(s)	74
Hin1II	CATG	1 cut(s)	276
Hin6I	GCGC	1 cut(s)	72
HinP1I	GCGC	1 cut(s)	72
HinfI	GANTC	3 cut(s)	122, 131, 323
HpaII	CCGG	2 cut(s)	29, 329
Hpy188I	TCNGA	4 cut(s)	130, 136, 252, 322
Hpy188III	TCNNGA	1 cut(s)	234
Hpy99I	CGWCG	4 cut(s)	155, 158, 240, 318
HpyCH4III	ACNGT	1 cut(s)	240
HpyF10VI	GCNNNNNNNGC	1 cut(s)	299
Hsp92II	CATG	1 cut(s)	276
HspAI	GCGC	1 cut(s)	72
Kzo9I	GATC	2 cut(s)	310, 317
LmnI	GCTCC	4 cut(s)	5, 79, 136, 298
Lsp1109I	GCAGC	2 cut(s)	190, 226
LweI	GCATC	2 cut(s)	168, 280
MaeI	CTAG	1 cut(s)	113
MalI	GATC	2 cut(s)	312, 319
MboI	GATC	2 cut(s)	310, 317
MboII	GAAGA	5 cut(s)	25, 72, 117, 155, 320
MhlI	GDGCHC	1 cut(s)	141
MnlI	CCTC	2 cut(s)	325, 346
MroXI	GAANNNNTTC	1 cut(s)	226
MspI	CCGG	2 cut(s)	29, 329
MspR9I	CCNGG	2 cut(s)	29, 88
MvaI	CCWGG	1 cut(s)	88
MwoI	GCNNNNNNNGC	1 cut(s)	299
NciI	CCSGG	1 cut(s)	29
NdeII	GATC	2 cut(s)	310, 317
NlaIII	CATG	1 cut(s)	276
NlaIV	GGNNCC	1 cut(s)	266
NspI	RCATGY	1 cut(s)	276
PceI	AGGCCT	1 cut(s)	335
PciI	ACATGT	1 cut(s)	272
PcsI	WCGNNNNNNNCGW	2 cut(s)	147, 159
PdmI	GAANNNNTTC	1 cut(s)	226
PfeI	GAWTC	3 cut(s)	122, 131, 323
PkrI	GCNGC	2 cut(s)	205, 216
PscI	ACATGT	1 cut(s)	272
Psp124BI	GAGCTC	1 cut(s)	141
Psp6I	CCWGG	1 cut(s)	86
PspFI	CCCAGC	1 cut(s)	68
PspGI	CCWGG	1 cut(s)	86
PspN4I	GGNNCC	1 cut(s)	266
PspPI	GGNCC	2 cut(s)	101, 264
RsaI	GTAC	2 cut(s)	173, 277
RsaNI	GTAC	2 cut(s)	172, 276
SacI	GAGCTC	1 cut(s)	141
SatI	GCNGC	2 cut(s)	204, 215
Sau3AI	GATC	2 cut(s)	310, 317
Sau96I	GGNCC	2 cut(s)	101, 264
ScrFI	CCNGG	2 cut(s)	29, 88
SduI	GDGCHC	1 cut(s)	141
SetI	ASST	2 cut(s)	92, 141
SfaNI	GCATC	2 cut(s)	168, 280
SinI	GGWCC	1 cut(s)	264
SseBI	AGGCCT	1 cut(s)	335
SsiI	CCGC	2 cut(s)	41, 182
SspMI	CTAG	1 cut(s)	113
SstI	GAGCTC	1 cut(s)	141
StuI	AGGCCT	1 cut(s)	335
StyD4I	CCNGG	2 cut(s)	27, 86
StyI	CCWWGG	1 cut(s)	186
TaaI	ACNGT	1 cut(s)	240
TaqI	TCGA	3 cut(s)	141, 162, 313
TatI	WGTACW	1 cut(s)	275
TfiI	GAWTC	3 cut(s)	122, 131, 323
TscAI	CASTG	3 cut(s)	289, 303, 309
TseI	GCWGC	2 cut(s)	203, 214
TspRI	CASTG	3 cut(s)	289, 303, 309
VpaK11BI	GGWCC	1 cut(s)	264
XceI	RCATGY	1 cut(s)	276
XmnI	GAANNNNTTC	1 cut(s)	226
XspI	CTAG	1 cut(s)	113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.