Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004972.1

Orthogroup ID

OG0017389

Physical Location & Seq

Genomic Coordinates Reverse (-)

6899 .. 8934

Gene Structure 2036 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004972.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

atgagccacgcttatactgccgccagtggcaccaacaactgtcaagggtgtgacctacggaaacaccgccaaacatgctatcacctgagctccggctcagcagggagaagtcatcctccaccttgccggcctccggtgaccagtggcagggtgccggcgaccggggactggaatccggcgaccggggaccggaatccggcgaccggggaccggaatccggcgaccgagattccggtgaagataatgagagcattaaagaacccaagaagcccggtcgccgtggccggaaaaagacctcaccaaagaaaacccagcgctccaaaaaagcccagattgaaaaatggcccgatagaactagaacccgaatcttcagattcagagcttaaagattacgacgacggcatcgatttcctctacgactacccgcccttggtttgctgctttagggcagcccagaaaaagtttgtcctgacggttcgggtctctgacaacccgatggacctggacatgtacaaccagtggagatgctccaatggcactggaagatcgacgatctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009295 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0018130 GO:0019438 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0042644 GO:0042646 GO:0042793 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043621 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PfkB SOUL

Protein Analysis

185

Amino Acids

20.36

Weight (kDa)

9.35

Isoelectric Point (pI)

47.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017389)

Species	Orthologous Gene IDs
malus_domestica	MD04G1144300.v1.1
rosa_laevigata	RLG00000002521 RLG00000002525 RLG00000025117 RLG00000034796
rosa_multiflora	Rmu_sc0001114.1_g000009 Rmu_sc0004972.1_g000003 Rmu_sc0017770.1_g000006
rosa_samantha	Rh1AG194700 Rh1DG104300 Rh5BG334200 Rh5DG346300 Rh7AG001000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	29, 151
AciI	CCGC	3 cut(s)	21, 67, 425
AcoI	YGGCCR	1 cut(s)	282
AcuI	CTGAAG	1 cut(s)	354
AfaI	GTAC	1 cut(s)	512
AfeI	AGCGCT	1 cut(s)	316
AflIII	ACRYGT	1 cut(s)	507
AgsI	TTSAA	1 cut(s)	337
AjnI	CCWGG	1 cut(s)	501
AluBI	AGCT	2 cut(s)	90, 382
AluI	AGCT	2 cut(s)	90, 382
Alw21I	GWGCWC	1 cut(s)	92
Alw26I	GTCTC	1 cut(s)	487
Aor51HI	AGCGCT	1 cut(s)	316
AoxI	GGCC	3 cut(s)	128, 282, 343
ApeKI	GCWGC	2 cut(s)	438, 449
AspLEI	GCGC	1 cut(s)	317
AspS9I	GGNCC	4 cut(s)	187, 208, 344, 499
AsuC2I	CCSGG	4 cut(s)	163, 184, 205, 272
AsuHPI	GGTGA	4 cut(s)	74, 148, 247, 290
AvaII	GGWCC	3 cut(s)	187, 208, 499
BanI	GGYRCC	2 cut(s)	29, 151
BanII	GRGCYC	1 cut(s)	92
Bbv12I	GWGCWC	1 cut(s)	92
BbvI	GCAGC	2 cut(s)	425, 461
BccI	CCATC	1 cut(s)	490
BceAI	ACGGC	2 cut(s)	263, 415
BciT130I	CCWGG	1 cut(s)	503
BcnI	CCSGG	4 cut(s)	163, 184, 205, 272
BcoDI	GTCTC	1 cut(s)	487
BfaI	CTAG	1 cut(s)	356
BfoI	RGCGCY	1 cut(s)	318
BisI	GCNGC	3 cut(s)	21, 439, 450
BlpI	GCTNAGC	1 cut(s)	97
BlsI	GCNGC	3 cut(s)	22, 440, 451
Bme1390I	CCNGG	5 cut(s)	163, 184, 205, 272, 503
Bme18I	GGWCC	3 cut(s)	187, 208, 499
BmgT120I	GGNCC	4 cut(s)	187, 208, 344, 499
BmiI	GGNNCC	4 cut(s)	31, 153, 188, 209
BmrFI	CCNGG	5 cut(s)	163, 184, 205, 272, 503
BmsI	GCATC	2 cut(s)	411, 515
Bpu10I	CCTNAGC	1 cut(s)	86
Bpu1102I	GCTNAGC	1 cut(s)	97
BpuMI	CCSGG	4 cut(s)	163, 184, 205, 272
Bsa29I	ATCGAT	1 cut(s)	405
BsaI	GGTCTC	1 cut(s)	487
BsaJI	CCNNGG	5 cut(s)	162, 183, 204, 279, 429
BsaWI	WCCGGW	4 cut(s)	133, 189, 210, 232
BsaXI	ACNNNNNCTCC	2 cut(s)	74, 104
Bse118I	RCCGGY	2 cut(s)	126, 154
Bse1I	ACTGG	5 cut(s)	24, 141, 173, 517, 544
BseBI	CCWGG	1 cut(s)	503
BseCI	ATCGAT	1 cut(s)	405
BseDI	CCNNGG	5 cut(s)	162, 183, 204, 279, 429
BseGI	GGATG	1 cut(s)	112
BseMII	CTCAG	2 cut(s)	77, 111
BseNI	ACTGG	5 cut(s)	24, 141, 173, 517, 544
BseXI	GCAGC	2 cut(s)	425, 461
BseYI	CCCAGC	1 cut(s)	311
Bsh1285I	CGRYCG	5 cut(s)	162, 183, 204, 225, 276
BshFI	GGCC	3 cut(s)	130, 284, 345
BshNI	GGYRCC	2 cut(s)	29, 151
BshVI	ATCGAT	1 cut(s)	405
BsiEI	CGRYCG	5 cut(s)	162, 183, 204, 225, 276
BsiHKAI	GWGCWC	1 cut(s)	92
BslFI	GGGAC	3 cut(s)	179, 200, 221
BsmAI	GTCTC	1 cut(s)	487
BsmFI	GGGAC	3 cut(s)	179, 200, 221
BsnI	GGCC	3 cut(s)	130, 284, 345
Bso31I	GGTCTC	1 cut(s)	487
Bsp1286I	GDGCHC	1 cut(s)	92
Bsp1407I	TGTACA	1 cut(s)	510
Bsp143I	GATC	2 cut(s)	545, 552
Bsp1720I	GCTNAGC	1 cut(s)	97
BspACI	CCGC	3 cut(s)	21, 67, 425
BspANI	GGCC	3 cut(s)	130, 284, 345
BspCNI	CTCAG	2 cut(s)	78, 110
BspDI	ATCGAT	1 cut(s)	405
BspLI	GGNNCC	4 cut(s)	31, 153, 188, 209
BspT107I	GGYRCC	2 cut(s)	29, 151
BspTNI	GGTCTC	1 cut(s)	487
BsrFI	RCCGGY	2 cut(s)	126, 154
BsrGI	TGTACA	1 cut(s)	510
BsrI	ACTGG	5 cut(s)	24, 141, 173, 517, 544
BssAI	RCCGGY	2 cut(s)	126, 154
BssECI	CCNNGG	5 cut(s)	162, 183, 204, 279, 429
BssMI	GATC	2 cut(s)	545, 552
BssT1I	CCWWGG	1 cut(s)	429
Bst2UI	CCWGG	1 cut(s)	503
Bst4CI	ACNGT	2 cut(s)	41, 475
BstAUI	TGTACA	1 cut(s)	510
BstC8I	GCNNGC	2 cut(s)	128, 156
BstDEI	CTNAG	2 cut(s)	86, 97
BstDSI	CCRYGG	1 cut(s)	279
BstEII	GGTNACC	1 cut(s)	136
BstF5I	GGATG	1 cut(s)	112
BstH2I	RGCGCY	1 cut(s)	318
BstHHI	GCGC	1 cut(s)	317
BstKTI	GATC	2 cut(s)	548, 555
BstMAI	GTCTC	1 cut(s)	487
BstMBI	GATC	2 cut(s)	545, 552
BstMCI	CGRYCG	5 cut(s)	162, 183, 204, 225, 276
BstMWI	GCNNNNNNNGC	3 cut(s)	17, 75, 534
BstNI	CCWGG	1 cut(s)	503
BstNSI	RCATGY	2 cut(s)	78, 511
BstPI	GGTNACC	1 cut(s)	136
BstSCI	CCNGG	5 cut(s)	161, 182, 203, 270, 501
BstV1I	GCAGC	2 cut(s)	425, 461
Bsu15I	ATCGAT	1 cut(s)	405
BsuRI	GGCC	3 cut(s)	130, 284, 345
BsuTUI	ATCGAT	1 cut(s)	405
BtgI	CCRYGG	1 cut(s)	279
BtsCI	GGATG	1 cut(s)	112
BtsIMutI	CAGTG	4 cut(s)	31, 148, 524, 537
Cac8I	GCNNGC	2 cut(s)	128, 156
CfoI	GCGC	1 cut(s)	317
Cfr10I	RCCGGY	2 cut(s)	126, 154
Cfr13I	GGNCC	4 cut(s)	187, 208, 344, 499
ClaI	ATCGAT	1 cut(s)	405
Csp6I	GTAC	1 cut(s)	511
CviAII	CATG	2 cut(s)	75, 508
CviQI	GTAC	1 cut(s)	511
DdeI	CTNAG	2 cut(s)	86, 97
DpnI	GATC	2 cut(s)	547, 554
DpnII	GATC	2 cut(s)	545, 552
EaeI	YGGCCR	1 cut(s)	282
Ecl136II	GAGCTC	1 cut(s)	90
Eco130I	CCWWGG	1 cut(s)	429
Eco24I	GRGCYC	1 cut(s)	92
Eco31I	GGTCTC	1 cut(s)	487
Eco47I	GGWCC	3 cut(s)	187, 208, 499
Eco47III	AGCGCT	1 cut(s)	316
Eco53kI	GAGCTC	1 cut(s)	90
Eco57I	CTGAAG	1 cut(s)	354
Eco91I	GGTNACC	1 cut(s)	136
EcoICRI	GAGCTC	1 cut(s)	90
EcoO65I	GGTNACC	1 cut(s)	136
EcoRII	CCWGG	1 cut(s)	501
EcoT14I	CCWWGG	1 cut(s)	429
EcoT38I	GRGCYC	1 cut(s)	92
ErhI	CCWWGG	1 cut(s)	429
FaeI	CATG	2 cut(s)	78, 511
FaiI	YATR	3 cut(s)	15, 76, 509
FaqI	GGGAC	3 cut(s)	179, 200, 221
FatI	CATG	2 cut(s)	74, 507
FauI	CCCGC	1 cut(s)	432
Fnu4HI	GCNGC	3 cut(s)	21, 439, 450
FokI	GGATG	1 cut(s)	99
FriOI	GRGCYC	1 cut(s)	92
Fsp4HI	GCNGC	3 cut(s)	21, 439, 450
FspBI	CTAG	1 cut(s)	356
GlaI	GCGC	1 cut(s)	316
GluI	GCNGC	3 cut(s)	21, 439, 450
GsaI	CCCAGC	1 cut(s)	315
HaeII	RGCGCY	1 cut(s)	318
HaeIII	GGCC	3 cut(s)	130, 284, 345
HhaI	GCGC	1 cut(s)	317
Hin1II	CATG	2 cut(s)	78, 511
Hin6I	GCGC	1 cut(s)	315
HinP1I	GCGC	1 cut(s)	315
HinfI	GANTC	6 cut(s)	172, 193, 214, 229, 365, 374
HphI	GGTGA	4 cut(s)	74, 148, 247, 290
Hpy188I	TCNGA	4 cut(s)	373, 379, 487, 557
Hpy188III	TCNNGA	1 cut(s)	469
Hpy99I	CGWCG	3 cut(s)	398, 401, 553
HpyCH4III	ACNGT	2 cut(s)	41, 475
HpyF10VI	GCNNNNNNNGC	3 cut(s)	17, 75, 534
HpyF3I	CTNAG	2 cut(s)	86, 97
Hsp92II	CATG	2 cut(s)	78, 511
HspAI	GCGC	1 cut(s)	315
KroI	GCCGGC	2 cut(s)	126, 154
KroNI	GCCGGC	2 cut(s)	128, 156
Kzo9I	GATC	2 cut(s)	545, 552
LmnI	GCTCC	3 cut(s)	95, 322, 533
Lsp1109I	GCAGC	2 cut(s)	425, 461
LweI	GCATC	2 cut(s)	411, 515
MaeI	CTAG	1 cut(s)	356
MaeIII	GTNAC	2 cut(s)	50, 136
MalI	GATC	2 cut(s)	547, 554
MboI	GATC	2 cut(s)	545, 552
MboII	GAAGA	3 cut(s)	250, 360, 555
MhlI	GDGCHC	1 cut(s)	92
MnlI	CCTC	4 cut(s)	126, 141, 306, 422
MroNI	GCCGGC	2 cut(s)	126, 154
MseI	TTAA	2 cut(s)	254, 384
MspR9I	CCNGG	5 cut(s)	163, 184, 205, 272, 503
MvaI	CCWGG	1 cut(s)	503
MwoI	GCNNNNNNNGC	3 cut(s)	17, 75, 534
NaeI	GCCGGC	2 cut(s)	128, 156
NciI	CCSGG	4 cut(s)	163, 184, 205, 272
NdeII	GATC	2 cut(s)	545, 552
NgoMIV	GCCGGC	2 cut(s)	126, 154
NlaIII	CATG	2 cut(s)	78, 511
NlaIV	GGNNCC	4 cut(s)	31, 153, 188, 209
NmuCI	GTSAC	2 cut(s)	50, 136
NspI	RCATGY	2 cut(s)	78, 511
PciI	ACATGT	1 cut(s)	507
PcsI	WCGNNNNNNNCGW	1 cut(s)	402
PdiI	GCCGGC	2 cut(s)	128, 156
PfeI	GAWTC	6 cut(s)	172, 193, 214, 229, 365, 374
PkrI	GCNGC	3 cut(s)	22, 440, 451
PscI	ACATGT	1 cut(s)	507
Psp124BI	GAGCTC	1 cut(s)	92
Psp6I	CCWGG	1 cut(s)	501
PspEI	GGTNACC	1 cut(s)	136
PspFI	CCCAGC	1 cut(s)	311
PspGI	CCWGG	1 cut(s)	501
PspN4I	GGNNCC	4 cut(s)	31, 153, 188, 209
PspPI	GGNCC	4 cut(s)	187, 208, 344, 499
RsaI	GTAC	1 cut(s)	512
RsaNI	GTAC	1 cut(s)	511
SacI	GAGCTC	1 cut(s)	92
SaqAI	TTAA	2 cut(s)	254, 384
SatI	GCNGC	3 cut(s)	21, 439, 450
Sau3AI	GATC	2 cut(s)	545, 552
Sau96I	GGNCC	4 cut(s)	187, 208, 344, 499
ScrFI	CCNGG	5 cut(s)	163, 184, 205, 272, 503
SduI	GDGCHC	1 cut(s)	92
SetI	ASST	7 cut(s)	57, 87, 92, 124, 298, 384, 504
SfaNI	GCATC	2 cut(s)	411, 515
SinI	GGWCC	3 cut(s)	187, 208, 499
SsiI	CCGC	3 cut(s)	21, 67, 425
SspMI	CTAG	1 cut(s)	356
SstI	GAGCTC	1 cut(s)	92
StyD4I	CCNGG	5 cut(s)	161, 182, 203, 270, 501
StyI	CCWWGG	1 cut(s)	429
TaaI	ACNGT	2 cut(s)	41, 475
TaqI	TCGA	2 cut(s)	405, 548
TaqII	GACCGA	1 cut(s)	239
TatI	WGTACW	1 cut(s)	510
TauI	GCSGC	1 cut(s)	23
TfiI	GAWTC	6 cut(s)	172, 193, 214, 229, 365, 374
Tru1I	TTAA	2 cut(s)	254, 384
Tru9I	TTAA	2 cut(s)	254, 384
TscAI	CASTG	4 cut(s)	31, 148, 524, 544
TseFI	GTSAC	2 cut(s)	50, 136
TseI	GCWGC	2 cut(s)	438, 449
Tsp45I	GTSAC	2 cut(s)	50, 136
TspGWI	ACGGA	1 cut(s)	73
TspRI	CASTG	4 cut(s)	31, 148, 524, 544
VpaK11BI	GGWCC	3 cut(s)	187, 208, 499
XceI	RCATGY	2 cut(s)	78, 511
XspI	CTAG	1 cut(s)	356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.