Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017770.1

Orthogroup ID

OG0017389

Physical Location & Seq

Genomic Coordinates Reverse (-)

16872 .. 17186

Gene Structure 315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017770.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

atgagagcattgaagaacccaagaagcccggtcgctgtggccggaaaaagacctcaccgaagaaaacccagcgctccaaaaaagcccagattgaaaaatggcccgatagaactagaacccgaatcttcagattcagagctcaaagattacgatgacggcatcgatttcctgtatgactacccgcccttggtttgctgctttagggcagcccagaaaaagtttgtcccgacggttcgggtctttgacaacccgatggacctggacatgtacaaccagtggagatgctccagtggcactggaagatcgacgatctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009295 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0018130 GO:0019438 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0042644 GO:0042646 GO:0042793 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043621 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PfkB SOUL

Protein Analysis

104

Amino Acids

11.87

Weight (kDa)

9.44

Isoelectric Point (pI)

55.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017389)

Species	Orthologous Gene IDs
malus_domestica	MD04G1144300.v1.1
rosa_laevigata	RLG00000002521 RLG00000002525 RLG00000025117 RLG00000034796
rosa_multiflora	Rmu_sc0001114.1_g000009 Rmu_sc0004972.1_g000003 Rmu_sc0017770.1_g000006
rosa_samantha	Rh1AG194700 Rh1DG104300 Rh5BG334200 Rh5DG346300 Rh7AG001000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	182
AcoI	YGGCCR	1 cut(s)	39
AcuI	CTGAAG	1 cut(s)	111
AfaI	GTAC	1 cut(s)	269
AfeI	AGCGCT	1 cut(s)	73
AfiI	CCNNNNNNNGG	1 cut(s)	187
AflIII	ACRYGT	1 cut(s)	264
AgsI	TTSAA	2 cut(s)	13, 94
AjnI	CCWGG	1 cut(s)	258
AluBI	AGCT	1 cut(s)	139
AluI	AGCT	1 cut(s)	139
Alw21I	GWGCWC	1 cut(s)	141
Aor51HI	AGCGCT	1 cut(s)	73
AoxI	GGCC	2 cut(s)	39, 100
ApeKI	GCWGC	2 cut(s)	195, 206
AspLEI	GCGC	1 cut(s)	74
AspS9I	GGNCC	2 cut(s)	101, 256
AsuC2I	CCSGG	1 cut(s)	29
AsuHPI	GGTGA	1 cut(s)	47
AvaII	GGWCC	1 cut(s)	256
BanII	GRGCYC	1 cut(s)	141
Bbv12I	GWGCWC	1 cut(s)	141
BbvI	GCAGC	2 cut(s)	182, 218
BccI	CCATC	1 cut(s)	247
BceAI	ACGGC	1 cut(s)	172
BciT130I	CCWGG	1 cut(s)	260
BcnI	CCSGG	1 cut(s)	29
BfaI	CTAG	1 cut(s)	113
BfoI	RGCGCY	1 cut(s)	75
BisI	GCNGC	2 cut(s)	196, 207
BlsI	GCNGC	2 cut(s)	197, 208
Bme1390I	CCNGG	2 cut(s)	29, 260
Bme18I	GGWCC	1 cut(s)	256
BmgT120I	GGNCC	2 cut(s)	101, 256
BmrFI	CCNGG	2 cut(s)	29, 260
BmsI	GCATC	2 cut(s)	168, 272
BpmI	CTGGAG	1 cut(s)	271
BpuMI	CCSGG	1 cut(s)	29
Bsa29I	ATCGAT	1 cut(s)	162
BsaJI	CCNNGG	1 cut(s)	186
Bsc4I	CCNNNNNNNGG	1 cut(s)	187
Bse1I	ACTGG	3 cut(s)	274, 288, 301
BseBI	CCWGG	1 cut(s)	260
BseCI	ATCGAT	1 cut(s)	162
BseDI	CCNNGG	1 cut(s)	186
BseLI	CCNNNNNNNGG	1 cut(s)	187
BseNI	ACTGG	3 cut(s)	274, 288, 301
BseXI	GCAGC	2 cut(s)	182, 218
BseYI	CCCAGC	1 cut(s)	68
Bsh1285I	CGRYCG	1 cut(s)	33
BshFI	GGCC	2 cut(s)	41, 102
BshVI	ATCGAT	1 cut(s)	162
BsiEI	CGRYCG	1 cut(s)	33
BsiHKAI	GWGCWC	1 cut(s)	141
BsiSI	CCGG	2 cut(s)	29, 42
BslFI	GGGAC	1 cut(s)	209
BslI	CCNNNNNNNGG	1 cut(s)	187
BsmFI	GGGAC	1 cut(s)	209
BsnI	GGCC	2 cut(s)	41, 102
Bsp1286I	GDGCHC	1 cut(s)	141
Bsp1407I	TGTACA	1 cut(s)	267
Bsp143I	GATC	2 cut(s)	302, 309
BspACI	CCGC	1 cut(s)	182
BspANI	GGCC	2 cut(s)	41, 102
BspDI	ATCGAT	1 cut(s)	162
BsrGI	TGTACA	1 cut(s)	267
BsrI	ACTGG	3 cut(s)	274, 288, 301
BssECI	CCNNGG	1 cut(s)	186
BssMI	GATC	2 cut(s)	302, 309
BssT1I	CCWWGG	1 cut(s)	186
Bst2UI	CCWGG	1 cut(s)	260
Bst4CI	ACNGT	1 cut(s)	232
BstAUI	TGTACA	1 cut(s)	267
BstH2I	RGCGCY	1 cut(s)	75
BstHHI	GCGC	1 cut(s)	74
BstKTI	GATC	2 cut(s)	305, 312
BstMBI	GATC	2 cut(s)	302, 309
BstMCI	CGRYCG	1 cut(s)	33
BstMWI	GCNNNNNNNGC	1 cut(s)	291
BstNI	CCWGG	1 cut(s)	260
BstNSI	RCATGY	1 cut(s)	268
BstSCI	CCNGG	2 cut(s)	27, 258
BstV1I	GCAGC	2 cut(s)	182, 218
Bsu15I	ATCGAT	1 cut(s)	162
BsuRI	GGCC	2 cut(s)	41, 102
BsuTUI	ATCGAT	1 cut(s)	162
BtsIMutI	CAGTG	3 cut(s)	281, 294, 295
CfoI	GCGC	1 cut(s)	74
Cfr13I	GGNCC	2 cut(s)	101, 256
ClaI	ATCGAT	1 cut(s)	162
Csp6I	GTAC	1 cut(s)	268
CviAII	CATG	1 cut(s)	265
CviJI	RGCY	6 cut(s)	27, 41, 85, 102, 139, 209
CviKI_1	RGCY	6 cut(s)	27, 41, 85, 102, 139, 209
CviQI	GTAC	1 cut(s)	268
DpnI	GATC	2 cut(s)	304, 311
DpnII	GATC	2 cut(s)	302, 309
EaeI	YGGCCR	1 cut(s)	39
Ecl136II	GAGCTC	1 cut(s)	139
Eco130I	CCWWGG	1 cut(s)	186
Eco24I	GRGCYC	1 cut(s)	141
Eco47I	GGWCC	1 cut(s)	256
Eco47III	AGCGCT	1 cut(s)	73
Eco53kI	GAGCTC	1 cut(s)	139
Eco57I	CTGAAG	1 cut(s)	111
EcoICRI	GAGCTC	1 cut(s)	139
EcoRII	CCWGG	1 cut(s)	258
EcoT14I	CCWWGG	1 cut(s)	186
EcoT38I	GRGCYC	1 cut(s)	141
ErhI	CCWWGG	1 cut(s)	186
FaeI	CATG	1 cut(s)	268
FaiI	YATR	2 cut(s)	174, 266
FaqI	GGGAC	1 cut(s)	209
FatI	CATG	1 cut(s)	264
FauI	CCCGC	1 cut(s)	189
Fnu4HI	GCNGC	2 cut(s)	196, 207
FriOI	GRGCYC	1 cut(s)	141
Fsp4HI	GCNGC	2 cut(s)	196, 207
FspBI	CTAG	1 cut(s)	113
GlaI	GCGC	1 cut(s)	73
GluI	GCNGC	2 cut(s)	196, 207
GsaI	CCCAGC	1 cut(s)	72
GsuI	CTGGAG	1 cut(s)	271
HaeII	RGCGCY	1 cut(s)	75
HaeIII	GGCC	2 cut(s)	41, 102
HapII	CCGG	2 cut(s)	29, 42
HhaI	GCGC	1 cut(s)	74
Hin1II	CATG	1 cut(s)	268
Hin6I	GCGC	1 cut(s)	72
HinP1I	GCGC	1 cut(s)	72
HinfI	GANTC	2 cut(s)	122, 131
HpaII	CCGG	2 cut(s)	29, 42
HphI	GGTGA	1 cut(s)	47
Hpy188I	TCNGA	3 cut(s)	130, 136, 314
Hpy188III	TCNNGA	1 cut(s)	226
Hpy99I	CGWCG	2 cut(s)	232, 310
HpyCH4III	ACNGT	1 cut(s)	232
HpyF10VI	GCNNNNNNNGC	1 cut(s)	291
Hsp92II	CATG	1 cut(s)	268
HspAI	GCGC	1 cut(s)	72
Kzo9I	GATC	2 cut(s)	302, 309
LmnI	GCTCC	2 cut(s)	79, 290
Lsp1109I	GCAGC	2 cut(s)	182, 218
LweI	GCATC	2 cut(s)	168, 272
MaeI	CTAG	1 cut(s)	113
MalI	GATC	2 cut(s)	304, 311
MboI	GATC	2 cut(s)	302, 309
MboII	GAAGA	4 cut(s)	25, 72, 117, 312
MhlI	GDGCHC	1 cut(s)	141
MnlI	CCTC	1 cut(s)	63
MspI	CCGG	2 cut(s)	29, 42
MspR9I	CCNGG	2 cut(s)	29, 260
MvaI	CCWGG	1 cut(s)	260
MwoI	GCNNNNNNNGC	1 cut(s)	291
NciI	CCSGG	1 cut(s)	29
NdeII	GATC	2 cut(s)	302, 309
NlaIII	CATG	1 cut(s)	268
NspI	RCATGY	1 cut(s)	268
PciI	ACATGT	1 cut(s)	264
PfeI	GAWTC	2 cut(s)	122, 131
PkrI	GCNGC	2 cut(s)	197, 208
PscI	ACATGT	1 cut(s)	264
Psp124BI	GAGCTC	1 cut(s)	141
Psp6I	CCWGG	1 cut(s)	258
PspFI	CCCAGC	1 cut(s)	68
PspGI	CCWGG	1 cut(s)	258
PspPI	GGNCC	2 cut(s)	101, 256
RsaI	GTAC	1 cut(s)	269
RsaNI	GTAC	1 cut(s)	268
SacI	GAGCTC	1 cut(s)	141
SatI	GCNGC	2 cut(s)	196, 207
Sau3AI	GATC	2 cut(s)	302, 309
Sau96I	GGNCC	2 cut(s)	101, 256
ScrFI	CCNGG	2 cut(s)	29, 260
SduI	GDGCHC	1 cut(s)	141
SetI	ASST	3 cut(s)	55, 141, 261
SfaNI	GCATC	2 cut(s)	168, 272
SinI	GGWCC	1 cut(s)	256
SsiI	CCGC	1 cut(s)	182
SspMI	CTAG	1 cut(s)	113
SstI	GAGCTC	1 cut(s)	141
StyD4I	CCNGG	2 cut(s)	27, 258
StyI	CCWWGG	1 cut(s)	186
TaaI	ACNGT	1 cut(s)	232
TaqI	TCGA	2 cut(s)	162, 305
TatI	WGTACW	1 cut(s)	267
TfiI	GAWTC	2 cut(s)	122, 131
TscAI	CASTG	3 cut(s)	281, 295, 301
TseI	GCWGC	2 cut(s)	195, 206
TspRI	CASTG	3 cut(s)	281, 295, 301
VpaK11BI	GGWCC	1 cut(s)	256
XceI	RCATGY	1 cut(s)	268
XspI	CTAG	1 cut(s)	113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.