Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0016360

Physical Location & Seq

Genomic Coordinates Forward (+)

27625225 .. 27626808

Gene Structure 1584 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1185000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGGCTGCTGAAACTGTTGCATCACTTCAAATTCCTACCACTGATGAGCAAGTTGAGAAGAAAATAGAAGGCGAAAAGGCTTCTGAACAAGATGGTGTTTCCTTAACGGTTGCAACATCATCTGAGCCTCCAGCTGCAGCAGTTGAGGCTGAGAAGGCTGCTGCTGCTCCTGCACAAGATGTTCCGCTTGTGGAAGAAATAAAAGTGGAAAATGAAGCCATTCCTGCTTTACAAACACTCGATATCCCAAAGCAAGTGGTTGATGCTGTTGAGAGCCTGGCAGAGACTAAGAGCGCAAATAAGTCTGTAGGAAGAGAAGTACCCAAAGAAGTGGCCATAGATAGCATTGAAATAGTTGATGCTCCTGTGCCAGATGTTCCACTCGCAGAAGAAAAAAAGATAGAAAATGAATCCATTCCTGATTCACAAACATTAGATATTCAAAGTGTGGTTGCGTCTGTAGTGATAGAAGCACCGAAAGAACCATCCATAGATAGCTTTGAAGTAGGGCAAGTGGAGGAACCGAAGATAGTTGATGCTCCTCTATCATCAATTGTAACCATTGAGAATCAAGAGAAGCCTTTGGAAGTCACTTCGGACGAAGGATCCATAGCAATAGTCAAAGACTTAGATGTGAAGGACACACTAGAAGAATCTGAGCACGTAGAGCCTGAAGAGATAGTGCAGGATGAGATGGAAAATGATGAAGGCTCTATAGCTGAAAAGACTGAGCCTACCAGAGTCTTGGAGGAAGGGAAAACTGAAACAATGGACGCACCTAGTCTAGCTGTGGAGGAAGAACCAGAAAAGCCCAAACTTGTGGAACAAGAAAAGAAACAGGATGAAGTTGGGCCTGAGGAAAGTGTTGAGGTTGAAAAAGTGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM PPR_2 RWP-RK

Protein Analysis

296

Amino Acids

31.78

Weight (kDa)

4.08

Isoelectric Point (pI)

57.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016360)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g08611
malus_domestica	MD04G1185000.v1.1 MD12G1198800.v1.1
prunus_persica	Prupe.6G303400_v2.0.a1
pyrus_communis	pycom12g18520
rosa_chinensis	RchiOBHm_Chr3g0458711
rosa_laevigata	RLG00000025140
rosa_multiflora	Rmu_sc0001634.1_g000013
rosa_roxburghii	Rroxscaffold_6G00420850
rosa_rugosa	Rorug03G0031400
rosa_samantha	Rh3AG089000 Rh3BG091800 Rh3CG092200 Rh3DG092800
rosa_wichuraiana	Rw3G007610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	185
AclWI	GGATC	2 cut(s)	600, 613
AcoI	YGGCCR	1 cut(s)	333
AcsI	RAATTY	1 cut(s)	30
AcuI	CTGAAG	1 cut(s)	693
AfaI	GTAC	1 cut(s)	321
AgsI	TTSAA	5 cut(s)	29, 350, 443, 503, 875
AjnI	CCWGG	1 cut(s)	276
AluBI	AGCT	4 cut(s)	134, 498, 719, 788
AluI	AGCT	4 cut(s)	134, 498, 719, 788
Alw21I	GWGCWC	1 cut(s)	663
Alw26I	GTCTC	1 cut(s)	278
AlwI	GGATC	2 cut(s)	600, 613
AoxI	GGCC	2 cut(s)	333, 851
ApeKI	GCWGC	6 cut(s)	5, 134, 137, 158, 161, 164
ApoI	RAATTY	1 cut(s)	30
Asp700I	GAANNNNTTC	2 cut(s)	219, 414
AspLEI	GCGC	1 cut(s)	296
AspS9I	GGNCC	1 cut(s)	851
AxyI	CCTNAGG	1 cut(s)	855
BalI	TGGCCA	1 cut(s)	335
BamHI	GGATCC	1 cut(s)	605
Bbv12I	GWGCWC	1 cut(s)	663
BbvI	GCAGC	5 cut(s)	121, 145, 148, 149, 151
BccI	CCATC	3 cut(s)	86, 493, 688
BciT130I	CCWGG	1 cut(s)	278
BcoDI	GTCTC	1 cut(s)	278
BfaI	CTAG	3 cut(s)	647, 780, 785
BfmI	CTRYAG	4 cut(s)	135, 306, 459, 714
BisI	GCNGC	6 cut(s)	6, 135, 138, 159, 162, 165
BlsI	GCNGC	6 cut(s)	7, 136, 139, 160, 163, 166
Bme1390I	CCNGG	1 cut(s)	278
BmgT120I	GGNCC	1 cut(s)	851
BmiI	GGNNCC	2 cut(s)	522, 607
BmrFI	CCNGG	1 cut(s)	278
BmsI	GCATC	4 cut(s)	29, 253, 349, 526
BpmI	CTGGAG	1 cut(s)	114
BsaAI	YACGTR	1 cut(s)	664
Bse21I	CCTNAGG	1 cut(s)	855
BseBI	CCWGG	1 cut(s)	278
BseGI	GGATG	3 cut(s)	485, 694, 847
BseMII	CTCAG	5 cut(s)	114, 141, 648, 720, 846
BseRI	GAGGAG	1 cut(s)	531
BseXI	GCAGC	5 cut(s)	121, 145, 148, 149, 151
BsgI	GTGCAG	2 cut(s)	156, 704
BshFI	GGCC	2 cut(s)	335, 853
BsiHKAI	GWGCWC	1 cut(s)	663
BsmAI	GTCTC	1 cut(s)	278
BsnI	GGCC	2 cut(s)	335, 853
Bsp1286I	GDGCHC	1 cut(s)	663
Bsp143I	GATC	1 cut(s)	605
BspACI	CCGC	1 cut(s)	185
BspANI	GGCC	2 cut(s)	335, 853
BspCNI	CTCAG	5 cut(s)	115, 142, 649, 721, 847
BspLI	GGNNCC	2 cut(s)	522, 607
BspMAI	CTGCAG	1 cut(s)	139
BspPI	GGATC	2 cut(s)	600, 613
BssMI	GATC	1 cut(s)	605
Bst2UI	CCWGG	1 cut(s)	278
Bst4CI	ACNGT	2 cut(s)	16, 109
Bst6I	CTCTTC	2 cut(s)	307, 669
BstBAI	YACGTR	1 cut(s)	664
BstDEI	CTNAG	7 cut(s)	123, 150, 288, 628, 657, 729, 855
BstF5I	GGATG	3 cut(s)	485, 694, 847
BstHHI	GCGC	1 cut(s)	296
BstKTI	GATC	1 cut(s)	608
BstMAI	GTCTC	1 cut(s)	278
BstMBI	GATC	1 cut(s)	605
BstMWI	GCNNNNNNNGC	6 cut(s)	146, 155, 164, 170, 224, 667
BstNI	CCWGG	1 cut(s)	278
BstSCI	CCNGG	1 cut(s)	276
BstSFI	CTRYAG	4 cut(s)	135, 306, 459, 714
BstV1I	GCAGC	5 cut(s)	121, 145, 148, 149, 151
BstX2I	RGATCY	1 cut(s)	605
BstXI	CCANNNNNNTGG	3 cut(s)	331, 745, 820
BstYI	RGATCY	1 cut(s)	605
Bsu36I	CCTNAGG	1 cut(s)	855
BsuRI	GGCC	2 cut(s)	335, 853
BtsCI	GGATG	3 cut(s)	485, 694, 847
BtsIMutI	CAGTG	1 cut(s)	39
CfoI	GCGC	1 cut(s)	296
Cfr13I	GGNCC	1 cut(s)	851
CseI	GACGC	2 cut(s)	444, 782
Csp6I	GTAC	1 cut(s)	320
CspCI	CAANNNNNGTGG	2 cut(s)	237, 272
CviQI	GTAC	1 cut(s)	320
DdeI	CTNAG	7 cut(s)	123, 150, 288, 628, 657, 729, 855
DpnI	GATC	1 cut(s)	607
DpnII	GATC	1 cut(s)	605
EaeI	YGGCCR	1 cut(s)	333
Eam1104I	CTCTTC	2 cut(s)	307, 669
EarI	CTCTTC	2 cut(s)	307, 669
Eco32I	GATATC	1 cut(s)	244
Eco57I	CTGAAG	1 cut(s)	693
Eco81I	CCTNAGG	1 cut(s)	855
EcoRII	CCWGG	1 cut(s)	276
EcoRV	GATATC	1 cut(s)	244
FaiI	YATR	4 cut(s)	338, 491, 611, 716
Fnu4HI	GCNGC	6 cut(s)	6, 135, 138, 159, 162, 165
FokI	GGATG	3 cut(s)	472, 701, 854
Fsp4HI	GCNGC	6 cut(s)	6, 135, 138, 159, 162, 165
FspBI	CTAG	3 cut(s)	647, 780, 785
GlaI	GCGC	1 cut(s)	295
GluI	GCNGC	6 cut(s)	6, 135, 138, 159, 162, 165
GsuI	CTGGAG	1 cut(s)	114
HaeIII	GGCC	2 cut(s)	335, 853
HgaI	GACGC	2 cut(s)	444, 782
HhaI	GCGC	1 cut(s)	296
Hin6I	GCGC	1 cut(s)	294
HinP1I	GCGC	1 cut(s)	294
HinfI	GANTC	5 cut(s)	410, 422, 568, 653, 741
Hpy188I	TCNGA	4 cut(s)	85, 124, 598, 658
Hpy188III	TCNNGA	2 cut(s)	419, 572
HpyAV	CCTTC	6 cut(s)	62, 148, 596, 631, 701, 746
HpyCH4III	ACNGT	2 cut(s)	16, 109
HpyCH4IV	ACGT	1 cut(s)	663
HpyCH4V	TGCA	5 cut(s)	20, 113, 137, 173, 685
HpyF10VI	GCNNNNNNNGC	6 cut(s)	146, 155, 164, 170, 224, 667
HpyF3I	CTNAG	7 cut(s)	123, 150, 288, 628, 657, 729, 855
HpySE526I	ACGT	1 cut(s)	663
HspAI	GCGC	1 cut(s)	294
Kzo9I	GATC	1 cut(s)	605
LmnI	GCTCC	3 cut(s)	172, 367, 544
Lsp1109I	GCAGC	5 cut(s)	121, 145, 148, 149, 151
LweI	GCATC	4 cut(s)	29, 253, 349, 526
MaeI	CTAG	3 cut(s)	647, 780, 785
MaeII	ACGT	1 cut(s)	663
MaeIII	GTNAC	2 cut(s)	556, 589
MalI	GATC	1 cut(s)	607
MboI	GATC	1 cut(s)	605
MboII	GAAGA	8 cut(s)	70, 206, 324, 401, 538, 662, 686, 809
MfeI	CAATTG	1 cut(s)	552
MflI	RGATCY	1 cut(s)	605
MhlI	GDGCHC	1 cut(s)	663
MlsI	TGGCCA	1 cut(s)	335
MluCI	AATT	2 cut(s)	30, 552
MluNI	TGGCCA	1 cut(s)	335
MlyI	GAGTC	1 cut(s)	750
MnlI	CCTC	8 cut(s)	138, 139, 511, 552, 742, 787, 850, 862
Mox20I	TGGCCA	1 cut(s)	335
MroXI	GAANNNNTTC	2 cut(s)	219, 414
MscI	TGGCCA	1 cut(s)	335
MseI	TTAA	1 cut(s)	104
Msp20I	TGGCCA	1 cut(s)	335
MspA1I	CMGCKG	1 cut(s)	134
MspR9I	CCNGG	1 cut(s)	278
MunI	CAATTG	1 cut(s)	552
MvaI	CCWGG	1 cut(s)	278
MwoI	GCNNNNNNNGC	6 cut(s)	146, 155, 164, 170, 224, 667
NdeII	GATC	1 cut(s)	605
NlaIV	GGNNCC	2 cut(s)	522, 607
NmuCI	GTSAC	1 cut(s)	589
PdmI	GAANNNNTTC	2 cut(s)	219, 414
PfeI	GAWTC	4 cut(s)	410, 422, 568, 653
PkrI	GCNGC	6 cut(s)	7, 136, 139, 160, 163, 166
PleI	GAGTC	1 cut(s)	749
PpsI	GAGTC	1 cut(s)	749
Ppu21I	YACGTR	1 cut(s)	664
Psp6I	CCWGG	1 cut(s)	276
PspGI	CCWGG	1 cut(s)	276
PspN4I	GGNNCC	2 cut(s)	522, 607
PspPI	GGNCC	1 cut(s)	851
PstI	CTGCAG	1 cut(s)	139
PsuI	RGATCY	1 cut(s)	605
PvuII	CAGCTG	1 cut(s)	134
RsaI	GTAC	1 cut(s)	321
RsaNI	GTAC	1 cut(s)	320
SaqAI	TTAA	1 cut(s)	104
SatI	GCNGC	6 cut(s)	6, 135, 138, 159, 162, 165
Sau3AI	GATC	1 cut(s)	605
Sau96I	GGNCC	1 cut(s)	851
SchI	GAGTC	1 cut(s)	750
ScrFI	CCNGG	1 cut(s)	278
SduI	GDGCHC	1 cut(s)	663
SetI	ASST	7 cut(s)	136, 500, 666, 721, 781, 790, 873
SfaNI	GCATC	4 cut(s)	29, 253, 349, 526
SfcI	CTRYAG	4 cut(s)	135, 306, 459, 714
Sse9I	AATT	2 cut(s)	30, 552
SsiI	CCGC	1 cut(s)	185
SspMI	CTAG	3 cut(s)	647, 780, 785
StyD4I	CCNGG	1 cut(s)	276
TaaI	ACNGT	2 cut(s)	16, 109
TaiI	ACGT	1 cut(s)	666
TaqI	TCGA	1 cut(s)	240
TasI	AATT	2 cut(s)	30, 552
TfiI	GAWTC	4 cut(s)	410, 422, 568, 653
Tru1I	TTAA	1 cut(s)	104
Tru9I	TTAA	1 cut(s)	104
TscAI	CASTG	1 cut(s)	46
TseFI	GTSAC	1 cut(s)	589
TseI	GCWGC	6 cut(s)	5, 134, 137, 158, 161, 164
Tsp45I	GTSAC	1 cut(s)	589
TspDTI	ATGAA	4 cut(s)	228, 423, 720, 858
TspRI	CASTG	1 cut(s)	46
XapI	RAATTY	1 cut(s)	30
XmnI	GAANNNNTTC	2 cut(s)	219, 414
XspI	CTAG	3 cut(s)	647, 780, 785

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.