Rmu_sc0001634.1_g000013

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001634.1
OG0016360
Physical Location & Seq
Reverse (-)
93873 .. 97006
3134 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001634.1_g000013.1.cds

Sequence Viewer

Length: 2592 bp
atggctactgaaactgttgcatcacctccggttcctactactgatgatgagcaagttgcaaagaaggtgagtgaagagagaaaggctgatgaagaagatggtgttcctttaaccaaagagaatggagaagaaatacttaaaactgatgattcattaagtctagaaacaccacataaatctgaagctgtcgatcatgagaagattgaacctcctgtagttgaggctgaggagattgttgatgctcctgtctcagattttccacttgtagatgaaacgaaggtcagaaatgaccccattcctgatattctagagcaagtggatgaggctgagaagaatgctgatgctgctgtctcagatattccacttgtagaagaatcaaaggtggaaattgaccccattcctgatattccagagcaagtggttgatgctgtgaagatcccggaggaggttgagagttcaactgagtctatagtaagagaagcatcaaaagaaccagctatagaaatcatagaggaagggcaagtagaacaaccaaagatagttgatgctcctcaatcatcatatgaagctattgagaaaccagttgagccactggaggttactactgacaaagagtcagtggaaacagtcctaacagagattaaagattcagaactggaatctttggaagtccagaagccagaacttgctactgctgaagtggaggaaaagccaggagagccatctgaagttactcaagaagttgagacaaagcttgaggaggttgaacttgagaaaagcgtgcaggatgaaaaggtgaaagatgaagggcctgcagctgataaggttgagcctatcccattcttggaggaagggaaaactgaagcagagaacacacatagtctagaagtggaggaagcaccagagcaacccaaagttaaagaagaagagaaaacacatgatgaagttggagctgaaaaaagtctggaggataatattgtgaaagatgaagggtctaaggttgaagcttccacaatactagacgggcaaactgataaagactatgaatctagtcaagtcaaaactccagaagtggttttgcttaatagagatggagcagattattctctacctgacgccacagaaacagttgcttctgaggaccaaaagaatgaagtaactgaggttgatgtggttgagaagctacaagaagaggcagctgtggagattgaaaaggttggaggagaggttctggaaactcaagagactgaaaaggaaattgctgtaactgaatattcagctgaaccaattaaagaggaagaaaaggcaggacaaaatgggattgaggtagttgagaaactagcagaagaggcatcggtaaagttggaaacagtacgagaaggaaatgtggagactctggagattgaagagaaggaaaagagtaatgtgataactgaggaatcaactcaaccaattgaattagacgaaaagaaagaactaagtggacttgatgcagttgagaagctcgcagaagaggcaccagtaaagttgggaacggttggagaagaaaatgtggagactctggagattgaagagaaggaaaagagtaatgtggtaactgaggaatcaactcaaccaattgaattagacgaaaagaaagaactaagtggacttgatgtggttgaaaagcccgcagaagaggcagcagtggaagtcgaaaaggttggagaaaagaacgtggaaagtgaggatggaaagagtgtgataactgaggatgaaaagaaagatttaagtggtgctgatgtaattgagaagatagcagatgagacagcggtgaagttggaagaggttggagaagataatgtgggaaagattgctgaaaccaatgagagtgaaaagaaagatgagataattgaggattcaagtcaaccaattctagcggatcaaaagaaagaatcaagtggggttgatgtggttgagaagctagcagaagatgcaacagttgaatttgagaaggttgaagaagcaaatgaaacaaagaatgtgcagtctaaagacaatgatagcaaaaatgtgcttgacgaggttttaactcagcaagataaagcagatgtcaacagctacgttattactccatctgaagttatagaaaaatcatttgagggagctgggaaagatgttgaacctgcggcagaaaatgaaaaggcagaacacataaaagatgagacaccaggtacagttgaaaccaagaaagaagataatgtagaagagaagcaggatgaagtcactacattggttactgaaccacttggagaatccaagccatctgagccagaagtgaaaggtgatgaacctgttacattggagaaaaccattgaggatgttgcaaaatctgatcgaaatatagagcctcccgcaaaagatggtgatgacacaaagtcctctgaagacctgccaaaagaagttccagctaagccctctcaaaaacaatcaaataccattttatcaaaggtcaagcagacacttgtgaaggcaaagcgagttattaccgggaaatctccaggcttgaaaacccctgcctccgaaaccaaggatgatattaaagtcaaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

863

Amino Acids

94.64

Weight (kDa)

4.21

Isoelectric Point (pI)

52.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016360)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g08611
malus_domestica MD04G1185000.v1.1 MD12G1198800.v1.1
prunus_persica Prupe.6G303400_v2.0.a1
pyrus_communis pycom12g18520
rosa_chinensis RchiOBHm_Chr3g0458711
rosa_laevigata RLG00000025140
rosa_multiflora Rmu_sc0001634.1_g000013
rosa_roxburghii Rroxscaffold_6G00420850
rosa_rugosa Rorug03G0031400
rosa_samantha Rh3AG089000 Rh3BG091800 Rh3CG092200 Rh3DG092800
rosa_wichuraiana Rw3G007610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 2173, 2439
AccB1I GGYRCC 1 cut(s) 1516
AciI CCGC 5 cut(s) 1671, 1811, 1919, 2168, 2394
AclWI GGATC 2 cut(s) 430, 1929
AcsI RAATTY 1 cut(s) 1985
AcuI CTGAAG 6 cut(s) 201, 717, 747, 882, 2139, 2445
AcyI GRCGYC 1 cut(s) 1116
AfaI GTAC 2 cut(s) 1374, 2215
AfiI CCNNNNNNNGG 2 cut(s) 445, 844
AhdI GACNNNNNGTC 2 cut(s) 613, 2416
AjnI CCWGG 3 cut(s) 712, 2209, 2539
AloI GAACNNNNNNTCC 2 cut(s) 1212, 1244
Alw26I GTCTC 8 cut(s) 253, 355, 740, 1238, 1385, 1550, 1799, 2198
AlwI GGATC 2 cut(s) 430, 1929
AoxI GGCC 1 cut(s) 809
ApeKI GCWGC 4 cut(s) 344, 815, 1196, 1682
ApoI RAATTY 1 cut(s) 1985
AspS9I GGNCC 2 cut(s) 809, 1141
AsuC2I CCSGG 2 cut(s) 440, 2530
AsuHPI GGTGA 6 cut(s) 15, 79, 808, 1825, 2336, 2417
AsuNHI GCTAGC 1 cut(s) 1963
AvaII GGWCC 1 cut(s) 1141
BanI GGYRCC 1 cut(s) 1516
BbsI GAAGAC 1 cut(s) 2433
BbvCI CCTCAGC 1 cut(s) 225
BbvI GCAGC 4 cut(s) 331, 827, 1208, 1694
BccI CCATC 7 cut(s) 92, 730, 1085, 1724, 2122, 2311, 2396
BciT130I CCWGG 3 cut(s) 714, 2211, 2541
BcnI CCSGG 2 cut(s) 440, 2530
BcoDI GTCTC 8 cut(s) 253, 355, 740, 1238, 1385, 1550, 1799, 2198
BfaI CTAG 8 cut(s) 161, 308, 884, 1019, 1050, 1340, 1916, 1964
BfmI CTRYAG 4 cut(s) 213, 468, 498, 813
BfuAI ACCTGC 2 cut(s) 2173, 2439
BisI GCNGC 5 cut(s) 345, 816, 1197, 1683, 2169
BlpI GCTNAGC 1 cut(s) 2451
BlsI GCNGC 5 cut(s) 346, 817, 1198, 1684, 2170
Bme1390I CCNGG 5 cut(s) 440, 714, 2211, 2530, 2541
Bme18I GGWCC 1 cut(s) 1141
BmeRI GACNNNNNGTC 2 cut(s) 613, 2416
BmgT120I GGNCC 2 cut(s) 809, 1141
BmiI GGNNCC 2 cut(s) 33, 1518
BmrFI CCNGG 5 cut(s) 440, 714, 2211, 2530, 2541
BmsI GCATC 9 cut(s) 29, 229, 331, 415, 491, 535, 1361, 1480, 1963
BmtI GCTAGC 1 cut(s) 1967
BpiI GAAGAC 1 cut(s) 2433
BpmI CTGGAG 6 cut(s) 614, 986, 1050, 1418, 1583, 2523
Bpu10I CCTNAGC 1 cut(s) 225
Bpu1102I GCTNAGC 1 cut(s) 2451
BpuEI CTTGAG 4 cut(s) 720, 776, 791, 1224
BpuMI CCSGG 2 cut(s) 440, 2530
BsaHI GRCGYC 1 cut(s) 1116
BsaJI CCNNGG 1 cut(s) 2568
BsaWI WCCGGW 1 cut(s) 28
BsaXI ACNNNNNCTCC 2 cut(s) 1212, 1242
Bsc4I CCNNNNNNNGG 2 cut(s) 445, 844
Bse1I ACTGG 4 cut(s) 581, 597, 660, 1520
BseBI CCWGG 3 cut(s) 714, 2211, 2541
BseDI CCNNGG 1 cut(s) 2568
BseGI GGATG 7 cut(s) 325, 793, 1735, 1759, 2263, 2365, 2578
BseLI CCNNNNNNNGG 2 cut(s) 445, 844
BseNI ACTGG 4 cut(s) 581, 597, 660, 1520
BseRI GAGGAG 5 cut(s) 242, 458, 540, 773, 1236
BseXI GCAGC 4 cut(s) 331, 827, 1208, 1694
BseYI CCCAGC 1 cut(s) 2147
BsgI GTGCAG 2 cut(s) 803, 2045
BshFI GGCC 1 cut(s) 811
BshNI GGYRCC 1 cut(s) 1516
BsiSI CCGG 3 cut(s) 29, 440, 2529
BslI CCNNNNNNNGG 2 cut(s) 445, 844
BsmAI GTCTC 8 cut(s) 253, 355, 740, 1238, 1385, 1550, 1799, 2198
BsmI GAATGC 1 cut(s) 340
BsnI GGCC 1 cut(s) 811
Bsp143I GATC 4 cut(s) 190, 435, 1921, 2374
Bsp1720I GCTNAGC 1 cut(s) 2451
BspACI CCGC 5 cut(s) 1671, 1811, 1919, 2168, 2394
BspANI GGCC 1 cut(s) 811
BspHI TCATGA 1 cut(s) 193
BspLI GGNNCC 2 cut(s) 33, 1518
BspMAI CTGCAG 1 cut(s) 817
BspMI ACCTGC 2 cut(s) 2173, 2439
BspOI GCTAGC 1 cut(s) 1967
BspPI GGATC 2 cut(s) 430, 1929
BspT107I GGYRCC 1 cut(s) 1516
BsrI ACTGG 4 cut(s) 581, 597, 660, 1520
BssECI CCNNGG 1 cut(s) 2568
BssMI GATC 4 cut(s) 190, 435, 1921, 2374
BssNI GRCGYC 1 cut(s) 1116
BssT1I CCWWGG 1 cut(s) 2568
Bst2UI CCWGG 3 cut(s) 714, 2211, 2541
Bst4CI ACNGT 7 cut(s) 16, 628, 1129, 1372, 1537, 1981, 2218
BstACI GRCGYC 1 cut(s) 1116
BstAPI GCANNNNNTGC 1 cut(s) 1973
BstC8I GCNNGC 5 cut(s) 782, 813, 1506, 1671, 1965
BstF5I GGATG 7 cut(s) 325, 793, 1735, 1759, 2263, 2365, 2578
BstKTI GATC 4 cut(s) 193, 438, 1924, 2377
BstMAI GTCTC 8 cut(s) 253, 355, 740, 1238, 1385, 1550, 1799, 2198
BstMBI GATC 4 cut(s) 190, 435, 1921, 2374
BstMWI GCNNNNNNNGC 7 cut(s) 344, 718, 1349, 1514, 1679, 1973, 2308
BstNI CCWGG 3 cut(s) 714, 2211, 2541
BstSCI CCNGG 5 cut(s) 438, 712, 2209, 2528, 2539
BstSFI CTRYAG 4 cut(s) 213, 468, 498, 813
BstV1I GCAGC 4 cut(s) 331, 827, 1208, 1694
BstV2I GAAGAC 1 cut(s) 2433
BstX2I RGATCY 1 cut(s) 435
BstYI RGATCY 1 cut(s) 435
BsuRI GGCC 1 cut(s) 811
BtsCI GGATG 7 cut(s) 325, 793, 1735, 1759, 2263, 2365, 2578
BtsI GCAGTG 1 cut(s) 1692
BtsIMutI CAGTG 3 cut(s) 590, 624, 1692
BveI ACCTGC 2 cut(s) 2173, 2439
Cac8I GCNNGC 5 cut(s) 782, 813, 1506, 1671, 1965
CciI TCATGA 1 cut(s) 193
Cfr13I GGNCC 2 cut(s) 809, 1141
CseI GACGC 1 cut(s) 1124
CsiI ACCWGGT 1 cut(s) 2209
Csp6I GTAC 2 cut(s) 1373, 2214
CviAII CATG 2 cut(s) 194, 938
CviQI GTAC 2 cut(s) 1373, 2214
DpnI GATC 4 cut(s) 192, 437, 1923, 2376
DpnII GATC 4 cut(s) 190, 435, 1921, 2374
DriI GACNNNNNGTC 2 cut(s) 613, 2416
Eam1105I GACNNNNNGTC 2 cut(s) 613, 2416
Eco130I CCWWGG 1 cut(s) 2568
Eco47I GGWCC 1 cut(s) 1141
Eco57I CTGAAG 6 cut(s) 201, 717, 747, 882, 2139, 2445
EcoO109I RGGNCCY 1 cut(s) 809
EcoRII CCWGG 3 cut(s) 712, 2209, 2539
EcoT14I CCWWGG 1 cut(s) 2568
ErhI CCWWGG 1 cut(s) 2568
FaeI CATG 2 cut(s) 197, 941
FalI AAGNNNNNCTT 2 cut(s) 120, 152
FatI CATG 2 cut(s) 193, 937
FauI CCCGC 2 cut(s) 1678, 2401
FauNDI CATATG 1 cut(s) 562
Fnu4HI GCNGC 5 cut(s) 345, 816, 1197, 1683, 2169
FokI GGATG 7 cut(s) 332, 800, 1742, 1766, 2270, 2372, 2585
Fsp4HI GCNGC 5 cut(s) 345, 816, 1197, 1683, 2169
FspBI CTAG 8 cut(s) 161, 308, 884, 1019, 1050, 1340, 1916, 1964
GluI GCNGC 5 cut(s) 345, 816, 1197, 1683, 2169
GsaI CCCAGC 1 cut(s) 2151
GsuI CTGGAG 6 cut(s) 614, 986, 1050, 1418, 1583, 2523
HaeIII GGCC 1 cut(s) 811
HapII CCGG 3 cut(s) 29, 440, 2529
HgaI GACGC 1 cut(s) 1124
Hin1I GRCGYC 1 cut(s) 1116
Hin1II CATG 2 cut(s) 197, 941
HincII GTYRAC 2 cut(s) 1907, 2095
HindII GTYRAC 2 cut(s) 1907, 2095
HindIII AAGCTT 2 cut(s) 752, 1005
HpaII CCGG 3 cut(s) 29, 440, 2529
HphI GGTGA 6 cut(s) 15, 79, 808, 1825, 2336, 2417
Hpy166II GTNNAC 4 cut(s) 1484, 1649, 1907, 2095
Hpy8I GTNNAC 4 cut(s) 1484, 1649, 1907, 2095
HpyCH4III ACNGT 7 cut(s) 16, 628, 1129, 1372, 1537, 1981, 2218
HpyCH4IV ACGT 2 cut(s) 1716, 2103
HpyCH4V TGCA 8 cut(s) 20, 59, 784, 815, 1493, 1976, 2026, 2366
HpyF10VI GCNNNNNNNGC 7 cut(s) 344, 718, 1349, 1514, 1679, 1973, 2308
HpySE526I ACGT 2 cut(s) 1716, 2103
Hsp92I GRCGYC 1 cut(s) 1116
Hsp92II CATG 2 cut(s) 197, 941
Kzo9I GATC 4 cut(s) 190, 435, 1921, 2374
LmnI GCTCC 5 cut(s) 247, 553, 950, 1094, 2144
Lsp1109I GCAGC 4 cut(s) 331, 827, 1208, 1694
LweI GCATC 9 cut(s) 29, 229, 331, 415, 491, 535, 1361, 1480, 1963
MabI ACCWGGT 1 cut(s) 2209
MaeI CTAG 8 cut(s) 161, 308, 884, 1019, 1050, 1340, 1916, 1964
MaeII ACGT 2 cut(s) 1716, 2103
MaeIII GTNAC 8 cut(s) 598, 730, 1156, 1264, 1594, 2263, 2275, 2335
MalI GATC 4 cut(s) 192, 437, 1923, 2376
MboI GATC 4 cut(s) 190, 435, 1921, 2374
MfeI CAATTG 2 cut(s) 1452, 1617
MflI RGATCY 1 cut(s) 435
MlyI GAGTC 4 cut(s) 473, 623, 1387, 1552
MmeI TCCRAC 7 cut(s) 928, 1198, 1344, 1519, 1684, 1800, 1810
MspA1I CMGCKG 4 cut(s) 818, 1199, 1280, 1811
MspI CCGG 3 cut(s) 29, 440, 2529
MspR9I CCNGG 5 cut(s) 440, 714, 2211, 2530, 2541
MunI CAATTG 2 cut(s) 1452, 1617
Mva1269I GAATGC 1 cut(s) 340
MvaI CCWGG 3 cut(s) 714, 2211, 2541
MwoI GCNNNNNNNGC 7 cut(s) 344, 718, 1349, 1514, 1679, 1973, 2308
NciI CCSGG 2 cut(s) 440, 2530
NdeI CATATG 1 cut(s) 562
NdeII GATC 4 cut(s) 190, 435, 1921, 2374
NheI GCTAGC 1 cut(s) 1963
NlaIII CATG 2 cut(s) 197, 941
NlaIV GGNNCC 2 cut(s) 33, 1518
NmuCI GTSAC 1 cut(s) 2263
PagI TCATGA 1 cut(s) 193
PctI GAATGC 1 cut(s) 340
PfoI TCCNGGA 1 cut(s) 438
PkrI GCNGC 5 cut(s) 346, 817, 1198, 1684, 2170
PleI GAGTC 4 cut(s) 472, 622, 1387, 1552
PpsI GAGTC 4 cut(s) 472, 622, 1387, 1552
Psp6I CCWGG 3 cut(s) 712, 2209, 2539
PspFI CCCAGC 1 cut(s) 2147
PspGI CCWGG 3 cut(s) 712, 2209, 2539
PspN4I GGNNCC 2 cut(s) 33, 1518
PspPI GGNCC 2 cut(s) 809, 1141
PstI CTGCAG 1 cut(s) 817
PsuI RGATCY 1 cut(s) 435
PvuII CAGCTG 3 cut(s) 818, 1199, 1280
RsaI GTAC 2 cut(s) 1374, 2215
RsaNI GTAC 2 cut(s) 1373, 2214
SatI GCNGC 5 cut(s) 345, 816, 1197, 1683, 2169
Sau3AI GATC 4 cut(s) 190, 435, 1921, 2374
Sau96I GGNCC 2 cut(s) 809, 1141
SchI GAGTC 4 cut(s) 473, 623, 1387, 1552
ScrFI CCNGG 5 cut(s) 440, 714, 2211, 2530, 2541
SexAI ACCWGGT 1 cut(s) 2209
SfaNI GCATC 9 cut(s) 29, 229, 331, 415, 491, 535, 1361, 1480, 1963
SfcI CTRYAG 4 cut(s) 213, 468, 498, 813
SinI GGWCC 1 cut(s) 1141
SmlI CTYRAG 4 cut(s) 735, 755, 770, 1239
SmoI CTYRAG 4 cut(s) 735, 755, 770, 1239
SsiI CCGC 5 cut(s) 1671, 1811, 1919, 2168, 2394
SspI AATATT 2 cut(s) 976, 1274
SspMI CTAG 8 cut(s) 161, 308, 884, 1019, 1050, 1340, 1916, 1964
StyD4I CCNGG 5 cut(s) 438, 712, 2209, 2528, 2539
StyI CCWWGG 1 cut(s) 2568
TaaI ACNGT 7 cut(s) 16, 628, 1129, 1372, 1537, 1981, 2218
TaiI ACGT 2 cut(s) 1719, 2106
TaqI TCGA 3 cut(s) 189, 1695, 2377
TauI GCSGC 1 cut(s) 2171
TscAI CASTG 3 cut(s) 597, 624, 1692
TseFI GTSAC 1 cut(s) 2263
TseI GCWGC 4 cut(s) 344, 815, 1196, 1682
Tsp45I GTSAC 1 cut(s) 2263
TspRI CASTG 3 cut(s) 597, 624, 1692
VpaK11BI GGWCC 1 cut(s) 1141
XapI RAATTY 1 cut(s) 1985
XbaI TCTAGA 3 cut(s) 160, 307, 883
XspI CTAG 8 cut(s) 161, 308, 884, 1019, 1050, 1340, 1916, 1964
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.